RchiOBHm_Chr7g0208491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002271
Physical Location & Seq
Reverse (-)
25909457 .. 25910487
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18659

Sequence Viewer

Length: 360 bp
ATGAGTCCCCATTCAGTAGCAGCGTTGATGATCCTGATCACCCTTGTAACCACAACTCACTGCATCAACAACACCATCACCTCTAGATCATCATCTTGGTGCGTTGCCGGCCGCACGGACGACCCCTCGTGCCTTGTCGGAGAGACTGACTTGGACTCGGATGAGTTCATGATGGATTCCGAAATCAGCCGAAGAATCCTGGCTGGAAATTCAGGCACTAAAAATGCTTTGGATCCTTCAAAGGCTTCGTCGTGTGACCGAAGCAATCCTCAATGCCACTCCAGTACGAAAAATCAGAACCCCCCAGGAGTAGACTGTGCCAAGGCTCAATATAATCGCGGCTGCCACCAGTACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.82

Weight (kDa)

6.01

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 339
AciI CCGC 2 cut(s) 112, 339
AclWI GGATC 3 cut(s) 25, 227, 240
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 2 cut(s) 286, 353
AgsI TTSAA 1 cut(s) 240
AjnI CCWGG 2 cut(s) 198, 304
Alw26I GTCTC 1 cut(s) 137
AlwI GGATC 3 cut(s) 25, 227, 240
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 2 cut(s) 20, 342
ApoI RAATTY 1 cut(s) 208
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AsuHPI GGTGA 2 cut(s) 31, 70
BamHI GGATCC 1 cut(s) 232
BauI CACGAG 1 cut(s) 127
BbvI GCAGC 2 cut(s) 32, 329
BccI CCATC 2 cut(s) 83, 166
BciT130I CCWGG 2 cut(s) 200, 306
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 21, 112, 340, 343
BlsI GCNGC 4 cut(s) 22, 113, 341, 344
Bme1390I CCNGG 2 cut(s) 200, 306
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 200, 306
BmsI GCATC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 265
BsaBI GATNNNNATC 2 cut(s) 35, 91
BsaJI CCNNGG 2 cut(s) 304, 321
Bse118I RCCGGY 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 282, 349
Bse8I GATNNNNATC 2 cut(s) 35, 91
BseBI CCWGG 2 cut(s) 200, 306
BseDI CCNNGG 2 cut(s) 304, 321
BseGI GGATG 1 cut(s) 166
BseJI GATNNNNATC 2 cut(s) 35, 91
BseNI ACTGG 2 cut(s) 282, 349
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 32, 329
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 111
BsiEI CGRYCG 1 cut(s) 112
BsiSI CCGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 137
BsnI GGCC 1 cut(s) 111
Bsp143I GATC 4 cut(s) 30, 36, 86, 232
BspACI CCGC 2 cut(s) 112, 339
BspANI GGCC 1 cut(s) 111
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 3 cut(s) 25, 227, 240
BsrFI RCCGGY 1 cut(s) 107
BsrI ACTGG 2 cut(s) 282, 349
BssAI RCCGGY 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 304, 321
BssMI GATC 4 cut(s) 30, 36, 86, 232
BssSI CACGAG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 1 cut(s) 127
Bst2UI CCWGG 2 cut(s) 200, 306
Bst4CI ACNGT 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 166
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 4 cut(s) 33, 39, 89, 235
BstMAI GTCTC 1 cut(s) 137
BstMBI GATC 4 cut(s) 30, 36, 86, 232
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 2 cut(s) 200, 306
BstSCI CCNGG 2 cut(s) 198, 304
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 2 cut(s) 32, 329
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 107
Csp6I GTAC 2 cut(s) 285, 352
CviAII CATG 2 cut(s) 169, 357
CviJI RGCY 6 cut(s) 111, 189, 203, 245, 326, 342
CviKI_1 RGCY 6 cut(s) 111, 189, 203, 245, 326, 342
CviQI GTAC 2 cut(s) 285, 352
DpnI GATC 4 cut(s) 32, 38, 88, 234
DpnII GATC 4 cut(s) 30, 36, 86, 232
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
EclXI CGGCCG 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 321
Eco52I CGGCCG 1 cut(s) 109
EcoRII CCWGG 2 cut(s) 198, 304
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 172, 360
FaiI YATR 3 cut(s) 170, 333, 358
FatI CATG 2 cut(s) 168, 356
FbaI TGATCA 1 cut(s) 36
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 4 cut(s) 21, 112, 340, 343
FokI GGATG 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 21, 112, 340, 343
FspBI CTAG 1 cut(s) 84
GluI GCNGC 4 cut(s) 21, 112, 340, 343
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 108
Hin1II CATG 2 cut(s) 172, 360
HinfI GANTC 4 cut(s) 4, 155, 176, 195
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 31, 70
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 140, 160, 181, 297
Hpy188III TCNNGA 3 cut(s) 34, 84, 169
Hpy8I GTNNAC 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4V TGCA 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
Hsp92II CATG 2 cut(s) 172, 360
KroI GCCGGC 1 cut(s) 107
KroNI GCCGGC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 30, 36, 86, 232
LpnPI CCDG 9 cut(s) 47, 121, 185, 189, 198, 212, 291, 295, 318
Lsp1109I GCAGC 2 cut(s) 32, 329
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 46, 254
MalI GATC 4 cut(s) 32, 38, 88, 234
MboI GATC 4 cut(s) 30, 36, 86, 232
MboII GAAGA 1 cut(s) 204
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 208
MlyI GAGTC 2 cut(s) 13, 149
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 91, 136, 279
MroNI GCCGGC 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 97
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 200, 306
MvaI CCWGG 2 cut(s) 200, 306
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 108
NaeI GCCGGC 1 cut(s) 109
NdeII GATC 4 cut(s) 30, 36, 86, 232
NgoMIV GCCGGC 1 cut(s) 107
NlaIII CATG 2 cut(s) 172, 360
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 254
PagI TCATGA 1 cut(s) 168
PdiI GCCGGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 176, 195
PkrI GCNGC 4 cut(s) 22, 113, 341, 344
PleI GAGTC 2 cut(s) 12, 149
PpsI GAGTC 2 cut(s) 12, 149
Psp6I CCWGG 2 cut(s) 198, 304
PspGI CCWGG 2 cut(s) 198, 304
PspN4I GGNNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 2 cut(s) 286, 353
RsaNI GTAC 2 cut(s) 285, 352
RseI CAYNNNNRTG 1 cut(s) 97
SatI GCNGC 4 cut(s) 21, 112, 340, 343
Sau3AI GATC 4 cut(s) 30, 36, 86, 232
SchI GAGTC 2 cut(s) 13, 149
ScrFI CCNGG 2 cut(s) 200, 306
SetI ASST 1 cut(s) 83
SfaNI GCATC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 1 cut(s) 208
SsiI CCGC 2 cut(s) 112, 339
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 198, 304
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 317
TaqII GACCGA 1 cut(s) 273
TasI AATT 1 cut(s) 208
TauI GCSGC 2 cut(s) 114, 342
TfiI GAWTC 2 cut(s) 176, 195
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 20, 342
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 65
XapI RAATTY 1 cut(s) 208
XbaI TCTAGA 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.