pycom17g06790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0002271
Physical Location & Seq
Forward (+)
4915489 .. 4915887
399 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06790.1

Sequence Viewer

Length: 399 bp
ATGGGTCACCGTGTAGTAGCTCTGTTGCTGTTAGCAACCATGGCGACGACCGTGTTGACCACAAGCCAAAGCATGGACAACGCCACCCCCATCGATAGCAGCAGCCCATCCTCCACCTCGTGCGACGACGGCGGCCTCAACGACCCATCGTGCCTTACTGCCCGCGCCGACACGCTGGATGACGTGGACGTGGAGTTCATGATGGACTCAGAAATCAGCCGAAGCATGTTGGCCGGCGGTAACTCAGGTTTTACCGGAATTGCCTTAAAAAGTGGCGAACCGGCGTCGTGTGTTAAGCAAGGCTCCCTTTGCCACCCCCCGCCTAACCGACCTGGCCCGAAAGGACCTCTGGCGTGTAGTCGTACTAGTTATAATCGCGTGTGCTACCGCAGCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

13.74

Weight (kDa)

5.15

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 73
AccII CGCG 2 cut(s) 165, 378
AciI CCGC 5 cut(s) 132, 163, 237, 320, 388
AcoI YGGCCR 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 284
AdeI CACNNNGTG 1 cut(s) 120
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 73
AhlI ACTAGT 1 cut(s) 365
AjiI CACGTC 2 cut(s) 184, 190
AjnI CCWGG 1 cut(s) 331
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
AoxI GGCC 3 cut(s) 133, 231, 334
ApeKI GCWGC 3 cut(s) 99, 102, 390
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 335, 344
AvaII GGWCC 1 cut(s) 344
BauI CACGAG 1 cut(s) 118
BbvI GCAGC 2 cut(s) 111, 114
BccI CCATC 4 cut(s) 98, 115, 154, 196
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 1 cut(s) 333
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BisI GCNGC 4 cut(s) 100, 103, 133, 391
BlsI GCNGC 4 cut(s) 101, 104, 134, 392
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 344
BmgBI CACGTC 2 cut(s) 184, 190
BmgT120I GGNCC 2 cut(s) 335, 344
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 284
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 254
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse118I RCCGGY 2 cut(s) 233, 280
BseBI CCWGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 107, 184
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 222, 258
BseXI GCAGC 2 cut(s) 111, 114
Bsh1236I CGCG 2 cut(s) 165, 378
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 135, 233, 336
BshVI ATCGAT 1 cut(s) 93
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 3 cut(s) 234, 255, 281
BslI CCNNNNNNNGG 1 cut(s) 73
BsnI GGCC 3 cut(s) 135, 233, 336
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 5 cut(s) 132, 163, 237, 320, 388
BspANI GGCC 3 cut(s) 135, 233, 336
BspCNI CTCAG 2 cut(s) 221, 257
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 2 cut(s) 165, 378
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 304
BsrFI RCCGGY 2 cut(s) 233, 280
BssAI RCCGGY 2 cut(s) 233, 280
BssECI CCNNGG 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 284
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 11, 52
BstACI GRCGYC 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 163, 235
BstDEI CTNAG 2 cut(s) 208, 244
BstDSI CCRYGG 1 cut(s) 39
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 2 cut(s) 107, 184
BstFNI CGCG 2 cut(s) 165, 378
BstHHI GCGC 1 cut(s) 167
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 41, 129, 309, 390
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 1 cut(s) 331
BstUI CGCG 2 cut(s) 165, 378
BstV1I GCAGC 2 cut(s) 111, 114
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 3 cut(s) 135, 233, 336
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 39
BtrI CACGTC 2 cut(s) 184, 190
BtsCI GGATG 2 cut(s) 107, 184
Cac8I GCNNGC 2 cut(s) 163, 235
CciI TCATGA 1 cut(s) 198
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 2 cut(s) 233, 280
Cfr13I GGNCC 2 cut(s) 335, 344
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 1 cut(s) 273
Csp6I GTAC 1 cut(s) 363
CviAII CATG 4 cut(s) 40, 73, 199, 226
CviJI RGCY 8 cut(s) 20, 66, 105, 135, 219, 233, 303, 336
CviKI_1 RGCY 8 cut(s) 20, 66, 105, 135, 219, 233, 303, 336
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 2 cut(s) 208, 244
DraIII CACNNNGTG 1 cut(s) 120
EaeI YGGCCR 1 cut(s) 231
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 344
Eco91I GGTNACC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 4 cut(s) 43, 76, 202, 229
FaiI YATR 5 cut(s) 41, 74, 200, 227, 372
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FatI CATG 4 cut(s) 39, 72, 198, 225
FauI CCCGC 2 cut(s) 170, 327
Fnu4HI GCNGC 4 cut(s) 100, 103, 133, 391
FokI GGATG 2 cut(s) 94, 191
Fsp4HI GCNGC 4 cut(s) 100, 103, 133, 391
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 166
GluI GCNGC 4 cut(s) 100, 103, 133, 391
HaeIII GGCC 3 cut(s) 135, 233, 336
HapII CCGG 3 cut(s) 234, 255, 281
HgaI GACGC 1 cut(s) 273
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 4 cut(s) 43, 76, 202, 229
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 1 cut(s) 206
HpaII CCGG 3 cut(s) 234, 255, 281
Hpy166II GTNNAC 2 cut(s) 57, 187
Hpy188I TCNGA 1 cut(s) 211
Hpy188III TCNNGA 1 cut(s) 199
Hpy8I GTNNAC 2 cut(s) 57, 187
Hpy99I CGWCG 4 cut(s) 49, 128, 131, 289
HpyCH4III ACNGT 2 cut(s) 11, 52
HpyCH4IV ACGT 2 cut(s) 183, 189
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 129, 309, 390
HpyF3I CTNAG 2 cut(s) 208, 244
HpySE526I ACGT 2 cut(s) 183, 189
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 4 cut(s) 43, 76, 202, 229
HspAI GCGC 1 cut(s) 165
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 8 cut(s) 161, 231, 247, 268, 294, 318, 335, 345
Lsp1109I GCAGC 2 cut(s) 111, 114
MaeI CTAG 1 cut(s) 366
MaeII ACGT 2 cut(s) 183, 189
MaeIII GTNAC 2 cut(s) 5, 239
MluCI AATT 2 cut(s) 258, 394
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 4 cut(s) 121, 127, 146, 357
MroNI GCCGGC 1 cut(s) 233
MseI TTAA 2 cut(s) 266, 294
MspI CCGG 3 cut(s) 234, 255, 281
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 2 cut(s) 165, 378
MwoI GCNNNNNNNGC 4 cut(s) 41, 129, 309, 390
NaeI GCCGGC 1 cut(s) 235
NcoI CCATGG 1 cut(s) 39
NgoMIV GCCGGC 1 cut(s) 233
NlaIII CATG 4 cut(s) 43, 76, 202, 229
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 229
PagI TCATGA 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 4 cut(s) 101, 104, 134, 392
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PpuMI RGGWCCY 1 cut(s) 344
PsiI TTATAA 1 cut(s) 372
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 2 cut(s) 335, 344
PspPPI RGGWCCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 266, 294
SatI GCNGC 4 cut(s) 100, 103, 133, 391
Sau96I GGNCC 2 cut(s) 335, 344
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 333
SetI ASST 7 cut(s) 22, 119, 186, 192, 250, 334, 349
SinI GGWCC 1 cut(s) 344
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 2 cut(s) 258, 394
SsiI CCGC 5 cut(s) 132, 163, 237, 320, 388
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 11, 52
TaiI ACGT 2 cut(s) 186, 192
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 258, 394
TauI GCSGC 1 cut(s) 135
Tru1I TTAA 2 cut(s) 266, 294
Tru9I TTAA 2 cut(s) 266, 294
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 99, 102, 390
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 344
XceI RCATGY 1 cut(s) 229
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.