Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292411.1

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Reverse (-)

530 .. 862

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292411.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgatcctgatcacccttgtaaccacaactcactgcatcaacaacaccatcacctctagatcatcatcttggtgcgttggcggccgcacggacgacccctcatgccttgttggagagactgacttggactcggatgagttcatgatggattccgaaatcagccgaagaatcctggctggaaattcaggcactaaaaatgctttggatccttcaaaggcttcgtcgtgtgaccgaagcgatcctcaatgccactccagtacgaaaaatcagaaccccccaggagtagactgtgccaaggctcaatataatcgcggctgccaccagtacccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.91

Weight (kDa)

5.43

Isoelectric Point (pI)

56.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	312
AciI	CCGC	3 cut(s)	81, 85, 312
AclWI	GGATC	3 cut(s)	200, 213, 233
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	181
AfaI	GTAC	2 cut(s)	259, 326
AgsI	TTSAA	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	171, 277
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	3 cut(s)	200, 213, 233
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	315
ApoI	RAATTY	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsuHPI	GGTGA	2 cut(s)	4, 43
BamHI	GGATCC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	56, 139
BciT130I	CCWGG	2 cut(s)	173, 279
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	1 cut(s)	57
BisI	GCNGC	4 cut(s)	82, 85, 313, 316
BlsI	GCNGC	4 cut(s)	83, 86, 314, 317
Bme1390I	CCNGG	2 cut(s)	173, 279
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	173, 279
BmsI	GCATC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	238
BsaBI	GATNNNNATC	2 cut(s)	8, 64
BsaJI	CCNNGG	2 cut(s)	277, 294
Bse1I	ACTGG	2 cut(s)	255, 322
Bse8I	GATNNNNATC	2 cut(s)	8, 64
BseBI	CCWGG	2 cut(s)	173, 279
BseDI	CCNNGG	2 cut(s)	277, 294
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	2 cut(s)	8, 64
BseNI	ACTGG	2 cut(s)	255, 322
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	302
Bsh1236I	CGCG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	1 cut(s)	84
BsiEI	CGRYCG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	3, 9, 59, 205, 238
BspACI	CCGC	3 cut(s)	81, 85, 312
BspANI	GGCC	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	200, 213, 233
BsrI	ACTGG	2 cut(s)	255, 322
BssECI	CCNNGG	2 cut(s)	277, 294
BssMI	GATC	5 cut(s)	3, 9, 59, 205, 238
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	173, 279
Bst4CI	ACNGT	1 cut(s)	290
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	5 cut(s)	6, 12, 62, 208, 241
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	5 cut(s)	3, 9, 59, 205, 238
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstNI	CCWGG	2 cut(s)	173, 279
BstSCI	CCNGG	2 cut(s)	171, 277
BstUI	CGCG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BstZI	CGGCCG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	31
CciI	TCATGA	1 cut(s)	141
CciNI	GCGGCCGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	258, 325
CviAII	CATG	3 cut(s)	102, 142, 330
CviJI	RGCY	6 cut(s)	84, 162, 176, 218, 299, 315
CviKI_1	RGCY	6 cut(s)	84, 162, 176, 218, 299, 315
CviQI	GTAC	2 cut(s)	258, 325
DpnI	GATC	5 cut(s)	5, 11, 61, 207, 240
DpnII	GATC	5 cut(s)	3, 9, 59, 205, 238
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	171, 277
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	105, 145, 333
FaiI	YATR	4 cut(s)	103, 143, 306, 331
FatI	CATG	3 cut(s)	101, 141, 329
FbaI	TGATCA	1 cut(s)	9
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	82, 85, 313, 316
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	82, 85, 313, 316
FspBI	CTAG	1 cut(s)	57
GluI	GCNGC	4 cut(s)	82, 85, 313, 316
GsuI	CTGGAG	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	105, 145, 333
HinfI	GANTC	3 cut(s)	128, 149, 168
HphI	GGTGA	2 cut(s)	4, 43
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	133, 154, 270
Hpy188III	TCNNGA	3 cut(s)	7, 57, 142
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	1 cut(s)	219
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	105, 145, 333
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	3, 9, 59, 205, 238
LpnPI	CCDG	8 cut(s)	20, 158, 162, 171, 185, 264, 268, 291
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	19, 227
MalI	GATC	5 cut(s)	5, 11, 61, 207, 240
MboI	GATC	5 cut(s)	3, 9, 59, 205, 238
MboII	GAAGA	1 cut(s)	177
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	64, 109, 252
MslI	CAYNNNNRTG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	173, 279
MvaI	CCWGG	2 cut(s)	173, 279
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	5 cut(s)	3, 9, 59, 205, 238
NlaIII	CATG	3 cut(s)	105, 145, 333
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	227
NotI	GCGGCCGC	1 cut(s)	82
PagI	TCATGA	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	149, 168
PkrI	GCNGC	4 cut(s)	83, 86, 314, 317
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
Psp6I	CCWGG	2 cut(s)	171, 277
PspGI	CCWGG	2 cut(s)	171, 277
PspN4I	GGNNCC	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	259, 326
RsaNI	GTAC	2 cut(s)	258, 325
RseI	CAYNNNNRTG	1 cut(s)	70
SatI	GCNGC	4 cut(s)	82, 85, 313, 316
Sau3AI	GATC	5 cut(s)	3, 9, 59, 205, 238
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	173, 279
SetI	ASST	1 cut(s)	56
SfaNI	GCATC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	70
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	3 cut(s)	81, 85, 312
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	2 cut(s)	171, 277
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	181
TauI	GCSGC	3 cut(s)	84, 87, 315
TfiI	GAWTC	2 cut(s)	149, 168
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	315
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	38
XapI	RAATTY	1 cut(s)	181
XbaI	TCTAGA	1 cut(s)	56
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.