Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

44286167 .. 44286478

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGAGTCCCCATTCAGTAGCAGCGGTGATGATCCTGATCACCCTTGTAACCACAACTCACTGCATCAACAACACCATCACCTCTAGATCATCATCTTGGTGCGTTGGCGGCCGCACCGACGACCCCTCGTGCCTTGTCGGAGAGACTGACTTGGACTCGGATGAGTTCATGATGGATTCCGAAATCAGCCGAAGAATCCTGGCTGGAAATTCAGGCACTAAAAATGTTTTGGATCCTTCAAAGGCTTCGTCGTGTGACCGAAGCAATCCTCAATGCCACTCCAGTACGAAAAATCAGAACCCCCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.09

Weight (kDa)

5.19

Isoelectric Point (pI)

69.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 108, 112
AclWI	GGATC	3 cut(s)	25, 227, 240
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	240
AjnI	CCWGG	2 cut(s)	198, 303
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	25, 227, 240
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AsuHPI	GGTGA	3 cut(s)	31, 37, 70
BamHI	GGATCC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	83, 166
BciT130I	CCWGG	2 cut(s)	200, 305
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	21, 109, 112
BlsI	GCNGC	3 cut(s)	22, 110, 113
Bme1390I	CCNGG	2 cut(s)	200, 305
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	200, 305
BmsI	GCATC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	265
BsaBI	GATNNNNATC	2 cut(s)	35, 91
BsaJI	CCNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	282
Bse8I	GATNNNNATC	2 cut(s)	35, 91
BseBI	CCWGG	2 cut(s)	200, 305
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	2 cut(s)	35, 91
BseNI	ACTGG	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	112
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	4 cut(s)	30, 36, 86, 232
BspACI	CCGC	3 cut(s)	23, 108, 112
BspANI	GGCC	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	3 cut(s)	25, 227, 240
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	30, 36, 86, 232
BssSI	CACGAG	1 cut(s)	127
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	200, 305
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	4 cut(s)	33, 39, 89, 235
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	4 cut(s)	30, 36, 86, 232
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	200, 305
BstSCI	CCNGG	2 cut(s)	198, 303
BstV1I	GCAGC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	168
CciNI	GCGGCCGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	4 cut(s)	111, 189, 203, 245
CviKI_1	RGCY	4 cut(s)	111, 189, 203, 245
CviQI	GTAC	1 cut(s)	285
DpnI	GATC	4 cut(s)	32, 38, 88, 234
DpnII	GATC	4 cut(s)	30, 36, 86, 232
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	109
Eco52I	CGGCCG	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	198, 303
FaeI	CATG	1 cut(s)	172
FaiI	YATR	1 cut(s)	170
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	21, 109, 112
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	3 cut(s)	21, 109, 112
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	3 cut(s)	21, 109, 112
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	172
HinfI	GANTC	4 cut(s)	4, 155, 176, 195
HphI	GGTGA	3 cut(s)	31, 37, 70
Hpy188I	TCNGA	4 cut(s)	140, 160, 181, 297
Hpy188III	TCNNGA	3 cut(s)	34, 84, 169
Hpy99I	CGWCG	2 cut(s)	122, 253
HpyAV	CCTTC	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	4 cut(s)	30, 36, 86, 232
LpnPI	CCDG	7 cut(s)	47, 185, 189, 198, 212, 290, 295
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	46, 254
MalI	GATC	4 cut(s)	32, 38, 88, 234
MboI	GATC	4 cut(s)	30, 36, 86, 232
MboII	GAAGA	1 cut(s)	204
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	13, 149
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	91, 136, 279
MslI	CAYNNNNRTG	1 cut(s)	97
MspA1I	CMGCKG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	200, 305
MvaI	CCWGG	2 cut(s)	200, 305
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	30, 36, 86, 232
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	254
NotI	GCGGCCGC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	176, 195
PkrI	GCNGC	3 cut(s)	22, 110, 113
PleI	GAGTC	2 cut(s)	12, 149
PpsI	GAGTC	2 cut(s)	12, 149
Psp6I	CCWGG	2 cut(s)	198, 303
PspGI	CCWGG	2 cut(s)	198, 303
PspN4I	GGNNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	97
SatI	GCNGC	3 cut(s)	21, 109, 112
Sau3AI	GATC	4 cut(s)	30, 36, 86, 232
SchI	GAGTC	2 cut(s)	13, 149
ScrFI	CCNGG	2 cut(s)	200, 305
SetI	ASST	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	23, 108, 112
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	198, 303
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	208
TauI	GCSGC	2 cut(s)	111, 114
TfiI	GAWTC	2 cut(s)	176, 195
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	208
XbaI	TCTAGA	1 cut(s)	83
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.