Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

4870252 .. 4870879

Gene Structure 628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGTCACTGTTCATCAGCAGCTCTGTTAGCGATGGTGGCGTTGACCCTGTTGACCACAACTCACGGCATCAACAACAACAGCAGCGGCGGCAGGGACACGTGGTGCGACGGCCTCAGCGACCCATCATGCCTCATTGCAAACAGCGACTTGGACGGCATGGAGTTCCTGATGGACTCGGAAATCAGCAGAAGGATCTTGGCCGGACATCCAAGTGTAACCAGACCGGCACTAGATCCCAGCAAAGCGGCGTCGTGTGATCGGAGGGGTTTCCCTCCTTGCCATCCCGGCTCCAACAGAAATCCCCCGGCGCCCAATTGCGATCAGACAAGGTACAATCGCGAGTGCTACCGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009741 GO:0009966 GO:0009987 GO:0010033 GO:0010469 GO:0010646 GO:0014070 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030312 GO:0030545 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0044464 GO:0045926 GO:0048018 GO:0048046 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0098772 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

120

Amino Acids

12.82

Weight (kDa)

6.38

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	1 cut(s)	342
AciI	CCGC	4 cut(s)	87, 90, 248, 352
AclWI	GGATC	2 cut(s)	203, 230
AcoI	YGGCCR	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	251, 311
AdeI	CACNNNGTG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	99
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
AlwI	GGATC	2 cut(s)	203, 230
AoxI	GGCC	2 cut(s)	112, 201
ApeKI	GCWGC	2 cut(s)	20, 84
AspLEI	GCGC	1 cut(s)	313
AsuC2I	CCSGG	2 cut(s)	288, 308
BanI	GGYRCC	1 cut(s)	310
BbrPI	CACGTG	1 cut(s)	102
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	32, 96
BccI	CCATC	4 cut(s)	28, 133, 166, 291
BceAI	ACGGC	3 cut(s)	82, 127, 172
BcnI	CCSGG	2 cut(s)	288, 308
BfaI	CTAG	1 cut(s)	233
BfoI	RGCGCY	1 cut(s)	314
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	5 cut(s)	21, 85, 88, 91, 249
BlsI	GCNGC	5 cut(s)	22, 86, 89, 92, 250
Bme1390I	CCNGG	2 cut(s)	288, 308
BmiI	GGNNCC	2 cut(s)	292, 312
BmrFI	CCNGG	2 cut(s)	288, 308
BmsI	GCATC	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	288, 308
BsaAI	YACGTR	1 cut(s)	102
BsaHI	GRCGYC	2 cut(s)	251, 311
BsaJI	CCNNGG	1 cut(s)	306
Bse118I	RCCGGY	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	2 cut(s)	208, 283
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	32, 96
BseYI	CCCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	114, 203
BshNI	GGYRCC	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	204, 227, 288, 308
BslFI	GGGAC	1 cut(s)	110
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	114, 203
Bsp143I	GATC	4 cut(s)	195, 235, 259, 322
Bsp68I	TCGCGA	1 cut(s)	342
BspACI	CCGC	4 cut(s)	87, 90, 248, 352
BspANI	GGCC	2 cut(s)	114, 203
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	292, 312
BspPI	GGATC	2 cut(s)	203, 230
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	226
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	4 cut(s)	195, 235, 259, 322
BssNI	GRCGYC	2 cut(s)	251, 311
Bst4CI	ACNGT	1 cut(s)	11
BstACI	GRCGYC	2 cut(s)	251, 311
BstBAI	YACGTR	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	208, 283
BstFNI	CGCG	1 cut(s)	342
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	4 cut(s)	198, 238, 262, 325
BstMBI	GATC	4 cut(s)	195, 235, 259, 322
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 90, 288
BstSCI	CCNGG	2 cut(s)	286, 306
BstUI	CGCG	1 cut(s)	342
BstV1I	GCAGC	2 cut(s)	32, 96
BstX2I	RGATCY	2 cut(s)	195, 235
BstYI	RGATCY	2 cut(s)	195, 235
BsuRI	GGCC	2 cut(s)	114, 203
BtgZI	GCGATG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	208, 283
BtsIMutI	CAGTG	1 cut(s)	7
BtuMI	TCGCGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	226
CseI	GACGC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	129, 160
CviJI	RGCY	4 cut(s)	23, 114, 203, 291
CviKI_1	RGCY	4 cut(s)	23, 114, 203, 291
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	116
DinI	GGCGCC	1 cut(s)	312
DpnI	GATC	4 cut(s)	197, 237, 261, 324
DpnII	GATC	4 cut(s)	195, 235, 259, 322
DraIII	CACNNNGTG	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	102
EgeI	GGCGCC	1 cut(s)	312
EheI	GGCGCC	1 cut(s)	312
FaeI	CATG	2 cut(s)	132, 163
FaiI	YATR	2 cut(s)	130, 161
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	2 cut(s)	128, 159
Fnu4HI	GCNGC	5 cut(s)	21, 85, 88, 91, 249
FokI	GGATG	2 cut(s)	195, 270
Fsp4HI	GCNGC	5 cut(s)	21, 85, 88, 91, 249
FspBI	CTAG	1 cut(s)	233
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	5 cut(s)	21, 85, 88, 91, 249
GsaI	CCCAGC	1 cut(s)	243
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	114, 203
HapII	CCGG	4 cut(s)	204, 227, 288, 308
HgaI	GACGC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	2 cut(s)	251, 311
Hin1II	CATG	2 cut(s)	132, 163
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	2 cut(s)	45, 54
HindII	GTYRAC	2 cut(s)	45, 54
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	4 cut(s)	204, 227, 288, 308
Hpy166II	GTNNAC	2 cut(s)	45, 54
Hpy188I	TCNGA	3 cut(s)	181, 264, 327
Hpy188III	TCNNGA	2 cut(s)	169, 341
Hpy8I	GTNNAC	2 cut(s)	45, 54
Hpy99I	CGWCG	2 cut(s)	113, 256
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 90, 288
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	2 cut(s)	251, 311
Hsp92II	CATG	2 cut(s)	132, 163
HspAI	GCGC	1 cut(s)	311
KasI	GGCGCC	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	195, 235, 259, 322
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	62, 79, 182, 217, 235, 240, 253, 301, 321
Lsp1109I	GCAGC	2 cut(s)	32, 96
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	5, 217
MalI	GATC	4 cut(s)	197, 237, 261, 324
MboI	GATC	4 cut(s)	195, 235, 259, 322
MfeI	CAATTG	2 cut(s)	316, 355
MflI	RGATCY	2 cut(s)	195, 235
MluCI	AATT	2 cut(s)	316, 355
Mly113I	GGCGCC	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	4 cut(s)	125, 143, 258, 285
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	4 cut(s)	204, 227, 288, 308
MspR9I	CCNGG	2 cut(s)	288, 308
MunI	CAATTG	2 cut(s)	316, 355
MvnI	CGCG	1 cut(s)	342
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 90, 288
NarI	GGCGCC	1 cut(s)	311
NciI	CCSGG	2 cut(s)	288, 308
NdeII	GATC	4 cut(s)	195, 235, 259, 322
NlaIII	CATG	2 cut(s)	132, 163
NlaIV	GGNNCC	2 cut(s)	292, 312
NmuCI	GTSAC	1 cut(s)	5
NruI	TCGCGA	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PkrI	GCNGC	5 cut(s)	22, 86, 89, 92, 250
PleI	GAGTC	1 cut(s)	170
PluTI	GGCGCC	1 cut(s)	314
PmaCI	CACGTG	1 cut(s)	102
PmlI	CACGTG	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	170
Ppu21I	YACGTR	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	292, 312
PsuI	RGATCY	2 cut(s)	195, 235
RruI	TCGCGA	1 cut(s)	342
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	213
SatI	GCNGC	5 cut(s)	21, 85, 88, 91, 249
Sau3AI	GATC	4 cut(s)	195, 235, 259, 322
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	288, 308
SetI	ASST	3 cut(s)	25, 104, 335
SfaNI	GCATC	1 cut(s)	78
SfoI	GGCGCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	316, 355
SsiI	CCGC	4 cut(s)	87, 90, 248, 352
SspDI	GGCGCC	1 cut(s)	310
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	286, 306
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	104
TasI	AATT	2 cut(s)	316, 355
TauI	GCSGC	3 cut(s)	90, 93, 251
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	20, 84
Tsp45I	GTSAC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	14
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.