Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8287091.1

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Reverse (-)

464 .. 850

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8287091.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgagtggatactcctcatcagcagcagttctgttagcaatgatgatggtgatgatgacaatgttcatcaccaaaactgattgcttcagcatcaaccagacaatcaccgtctcctctacttggtgcgatggcctcaacgacgacttgtcgtgcctaactggacagactgatttggattcggacgagttcatgctggactccgaattcagcagaagaatccttgctgatcaacaatcctactctggtaaggccttaaatcctgcagcggctgtgtcctgtgacagaaaggggtttcctccgtgccacactagcgggggaaactcgaatcccccacatgtagactgcgtcaaggcgcctaccaataaagattgctaccactataaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.94

Weight (kDa)

4.86

Isoelectric Point (pI)

49.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	2 cut(s)	266, 312
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	70
AcyI	GRCGYC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	334
AhdI	GACNNNNNGTC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	2 cut(s)	130, 249
ApeKI	GCWGC	2 cut(s)	23, 263
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	3 cut(s)	61, 61, 97
BanI	GGYRCC	1 cut(s)	352
BbvI	GCAGC	2 cut(s)	35, 275
BccI	CCATC	2 cut(s)	40, 122
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	3 cut(s)	24, 264, 267
BlsI	GCNGC	3 cut(s)	25, 265, 268
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	163
BseRI	GAGGAG	2 cut(s)	4, 103
BseXI	GCAGC	2 cut(s)	35, 275
BshFI	GGCC	2 cut(s)	132, 251
BshNI	GGYRCC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	132, 251
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	266, 312
BspANI	GGCC	2 cut(s)	132, 251
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	1 cut(s)	265
BspT107I	GGYRCC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	35, 275
BsuRI	GGCC	2 cut(s)	132, 251
BtgZI	GCGATG	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	1 cut(s)	355
CseI	GACGC	1 cut(s)	334
CviAII	CATG	2 cut(s)	190, 335
CviJI	RGCY	3 cut(s)	132, 251, 269
CviKI_1	RGCY	3 cut(s)	132, 251, 269
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
DriI	GACNNNNNGTC	1 cut(s)	145
Eam1105I	GACNNNNNGTC	1 cut(s)	145
Eco147I	AGGCCT	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	70
EcoRI	GAATTC	1 cut(s)	203
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	193, 338
FaiI	YATR	3 cut(s)	191, 336, 381
FatI	CATG	2 cut(s)	189, 334
FauI	CCCGC	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	24, 264, 267
Fsp4HI	GCNGC	3 cut(s)	24, 264, 267
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	3 cut(s)	24, 264, 267
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	132, 251
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	2 cut(s)	193, 338
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HinfI	GANTC	4 cut(s)	176, 197, 216, 325
HphI	GGTGA	3 cut(s)	61, 61, 97
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	181, 202
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	263
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	193, 338
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	6 cut(s)	110, 144, 179, 228, 273, 289
Lsp1109I	GCAGC	2 cut(s)	35, 275
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	225
MluCI	AATT	1 cut(s)	203
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	25, 124, 143, 306
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	309
NarI	GGCGCC	1 cut(s)	353
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	2 cut(s)	193, 338
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	338
PceI	AGGCCT	1 cut(s)	251
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	3 cut(s)	176, 216, 325
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	25, 265, 268
PleI	GAGTC	1 cut(s)	191
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	191
PscI	ACATGT	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	354
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	3 cut(s)	24, 264, 267
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	191
SfaNI	GCATC	1 cut(s)	99
SfcI	CTRYAG	1 cut(s)	261
SfoI	GGCGCC	1 cut(s)	354
Sse9I	AATT	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	266, 312
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	251
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	203
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	176, 216, 325
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	23, 263
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	2 cut(s)	55, 178
TspGWI	ACGGA	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.