Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Reverse (-)

23430920 .. 23431327

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG239200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGACTTGGTGTGGCCAAGATGAGTGGACACTCCTCATCAGCGGCAGCTCTGTTAGCAATGATGGTGGTGATGATGACTATGTCCATCACCAAAACTGATTGCTTCAGCATCGACCAGACGATCACCGTCTCCTCTACTTGGTGTGATGGCCTCAACGACGACTTGTCGTGCCTAACTAGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAATTCAGCAGAAGTATCTGGGCTCGTCAAGAATTCTACTCTAGTAAGACCTTAAATCCTGCAACGGCTGTGTCGTGTGACCGAAAGGGGTTTCCTTCGTGCCTCACTAGCGGGAAAAATAAGAACCCCCCAGCAGCACGCTGCAACGAGGCGCCTACCAATAGAGATTGCTACCGCTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.92

Weight (kDa)

5.74

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AciI	CCGC	3 cut(s)	44, 333, 397
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	224, 254
AcuI	CTGAAG	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	141
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	15, 151
ApeKI	GCWGC	3 cut(s)	47, 356, 363
ApoI	RAATTY	2 cut(s)	224, 254
AspLEI	GCGC	1 cut(s)	376
AsuHPI	GGTGA	3 cut(s)	82, 82, 118
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	59, 350, 368
BccI	CCATC	3 cut(s)	58, 95, 143
BceAI	ACGGC	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	180, 264, 330
BfoI	RGCGCY	1 cut(s)	377
BisI	GCNGC	4 cut(s)	45, 48, 357, 364
BlsI	GCNGC	4 cut(s)	46, 49, 358, 365
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	25, 124
BseXI	GCAGC	3 cut(s)	59, 350, 368
BseYI	CCCAGC	1 cut(s)	352
BshFI	GGCC	2 cut(s)	17, 153
BshNI	GGYRCC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	17, 153
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	3 cut(s)	44, 333, 397
BspANI	GGCC	2 cut(s)	17, 153
BspLI	GGNNCC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	66
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	374
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 330
BstV1I	GCAGC	3 cut(s)	59, 350, 368
BsuRI	GGCC	2 cut(s)	17, 153
Cac8I	GCNNGC	1 cut(s)	361
CfoI	GCGC	1 cut(s)	376
CspCI	CAANNNNNGTGG	4 cut(s)	7, 42, 48, 83
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	5 cut(s)	17, 50, 153, 245, 290
CviKI_1	RGCY	5 cut(s)	17, 50, 153, 245, 290
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DriI	GACNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	15
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	91
EcoRI	GAATTC	2 cut(s)	224, 254
EcoT38I	GRGCYC	1 cut(s)	247
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	1 cut(s)	214
FaiI	YATR	3 cut(s)	83, 212, 402
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	4 cut(s)	45, 48, 357, 364
FriOI	GRGCYC	1 cut(s)	247
Fsp4HI	GCNGC	4 cut(s)	45, 48, 357, 364
FspBI	CTAG	3 cut(s)	180, 264, 330
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	45, 48, 357, 364
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	17, 153
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	197, 218
HphI	GGTGA	3 cut(s)	82, 82, 118
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	202, 223
Hpy188III	TCNNGA	1 cut(s)	251
Hpy8I	GTNNAC	1 cut(s)	29
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	284, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 330
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	214
HspAI	GCGC	1 cut(s)	374
KasI	GGCGCC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	123
LpnPI	CCDG	5 cut(s)	131, 200, 226, 294, 366
Lsp1109I	GCAGC	3 cut(s)	59, 350, 368
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	180, 264, 330
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	247
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	3 cut(s)	224, 254, 403
MluNI	TGGCCA	1 cut(s)	17
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	46, 145, 164, 335, 364
Mox20I	TGGCCA	1 cut(s)	17
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	56, 330
NarI	GGCGCC	1 cut(s)	374
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	1 cut(s)	214
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	46, 49, 358, 365
PleI	GAGTC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	4 cut(s)	45, 48, 357, 364
Sau3AI	GATC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	2 cut(s)	52, 275
SfaNI	GCATC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	375
Sse9I	AATT	3 cut(s)	224, 254, 403
SsiI	CCGC	3 cut(s)	44, 333, 397
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	3 cut(s)	180, 264, 330
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	224, 254, 403
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	47, 356, 363
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	82
XapI	RAATTY	2 cut(s)	224, 254
XspI	CTAG	3 cut(s)	180, 264, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.