Rh7BG235000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002271
Physical Location & Seq
Reverse (-)
20576012 .. 20576401
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG235000.1

Sequence Viewer

Length: 390 bp
ATGAGTGGACACTCCTCATCAGCAGCAGTTCTGTTAGCAATGATGGTGGTGACGATGACTATGTTCATCACCAAAACTGATTGCTTTAGCATCAACCAGACAATCACCGTCTCCTCTACTTGGTGCGATGGCCTCAATGACGACCTGTCGTGCTTAATTGGACAGACCGATTTGAATTCGGACGAGTTCATGCTGGACTCCGAATTCAGCAGAAGAATCTTGGCTGCAGCTGTTACCTTCACTGGTAACACTGGAAATGGTGGACAGGCTGTGTCGTGTGACCGAAAGGGGTTTCCTCCGTGCCACACTGACGTGGCAAACAAAAAACCCCACCACCAAACTGCGACAAGGAGCCTACCCTTCGCGGTTGCTACCGCTATCCCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.76

Weight (kDa)

5.66

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 365
AciI CCGC 2 cut(s) 365, 375
AcsI RAATTY 2 cut(s) 175, 203
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 1 cut(s) 175
AhdI GACNNNNNGTC 1 cut(s) 145
AjiI CACGTC 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 115
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 3 cut(s) 23, 224, 227
ApoI RAATTY 2 cut(s) 175, 203
AsuHPI GGTGA 3 cut(s) 61, 61, 97
BbvI GCAGC 3 cut(s) 35, 211, 239
BccI CCATC 2 cut(s) 37, 122
BcoDI GTCTC 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 3 cut(s) 24, 225, 228
BlsI GCNGC 3 cut(s) 25, 226, 229
BmeRI GACNNNNNGTC 1 cut(s) 145
BmgBI CACGTC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 353
BmsI GCATC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 247, 256
Bse3DI GCAATG 1 cut(s) 45
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 247, 256
BseRI GAGGAG 2 cut(s) 4, 103
BseXI GCAGC 3 cut(s) 35, 211, 239
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 115
BsmBI CGTCTC 1 cut(s) 115
BsnI GGCC 1 cut(s) 132
BspACI CCGC 2 cut(s) 365, 375
BspANI GGCC 1 cut(s) 132
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 2 cut(s) 247, 256
Bst4CI ACNGT 1 cut(s) 109
BstFNI CGCG 1 cut(s) 365
BstMAI GTCTC 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 3 cut(s) 35, 211, 239
BsuRI GGCC 1 cut(s) 132
BtgZI GCGATG 1 cut(s) 141
BtrI CACGTC 1 cut(s) 313
BtsIMutI CAGTG 3 cut(s) 240, 249, 306
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 1 cut(s) 190
CviJI RGCY 5 cut(s) 132, 224, 230, 269, 354
CviKI_1 RGCY 5 cut(s) 132, 224, 230, 269, 354
DriI GACNNNNNGTC 1 cut(s) 145
Eam1105I GACNNNNNGTC 1 cut(s) 145
EcoRI GAATTC 2 cut(s) 175, 203
Esp3I CGTCTC 1 cut(s) 115
FaeI CATG 1 cut(s) 193
FaiI YATR 2 cut(s) 62, 191
FatI CATG 1 cut(s) 189
Fnu4HI GCNGC 3 cut(s) 24, 225, 228
Fsp4HI GCNGC 3 cut(s) 24, 225, 228
GluI GCNGC 3 cut(s) 24, 225, 228
HaeIII GGCC 1 cut(s) 132
Hin1II CATG 1 cut(s) 193
HinfI GANTC 2 cut(s) 197, 216
HphI GGTGA 3 cut(s) 61, 61, 97
Hpy166II GTNNAC 2 cut(s) 8, 263
Hpy188I TCNGA 2 cut(s) 181, 202
Hpy8I GTNNAC 2 cut(s) 8, 263
HpyAV CCTTC 2 cut(s) 247, 370
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 1 cut(s) 193
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 6 cut(s) 110, 158, 179, 228, 237, 251
Lsp1109I GCAGC 3 cut(s) 35, 211, 239
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 4 cut(s) 49, 232, 245, 278
MboII GAAGA 1 cut(s) 225
MluCI AATT 4 cut(s) 156, 175, 203, 385
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 4 cut(s) 25, 124, 143, 306
MseI TTAA 1 cut(s) 155
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 230
MvnI CGCG 1 cut(s) 365
NlaIII CATG 1 cut(s) 193
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 2 cut(s) 49, 278
OliI CACNNNNGTG 1 cut(s) 311
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 3 cut(s) 25, 226, 229
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 3 cut(s) 24, 225, 228
SchI GAGTC 1 cut(s) 191
SetI ASST 4 cut(s) 147, 232, 239, 315
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 4 cut(s) 156, 175, 203, 385
SsiI CCGC 2 cut(s) 365, 375
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 315
TaqII GACCGA 2 cut(s) 182, 297
TasI AATT 4 cut(s) 156, 175, 203, 385
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 3 cut(s) 247, 256, 313
TseFI GTSAC 2 cut(s) 49, 278
TseI GCWGC 3 cut(s) 23, 224, 227
Tsp45I GTSAC 2 cut(s) 49, 278
TspDTI ATGAA 2 cut(s) 55, 178
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 3 cut(s) 247, 256, 313
XapI RAATTY 2 cut(s) 175, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.