Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

44204115 .. 44206837

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGACGGTTAGTGTAGTGAAGATGAGTGGACACTCCTCATCAGCAGCAGCTCTGTTAGCAATGATGATGGTGATGATGACAATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCAGACAATCACCGTCTCCTCTACTTGGTGCGATGGCCTCAACGATGACTTGTCGTGCCTAATTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAATTCAGCAGAAGAATCCTGGGTGGAACTCAACCATCCGTCACTAAAGGTACCTTAGATCCTAGTAAGTCTCTTTTGTGTGACCGACAAAAAAATCCTAATTGCCATGATAGCGTGCCAAACCCAAAACCCCCATCAGAAAACTGTGCCGCGGAAGGGCAATTCAATCGCCTTTGCCACCGCTTTGGCAAATCAGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

5.23

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	374
AciI	CCGC	3 cut(s)	372, 374, 403
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	91
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	141, 378
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	50, 419
AluI	AGCT	2 cut(s)	50, 419
Alw26I	GTCTC	2 cut(s)	136, 297
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	44, 47
ApoI	RAATTY	1 cut(s)	224
Asp718I	GGTACC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	82, 82, 118
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	56, 59
BccI	CCATC	4 cut(s)	61, 143, 265, 364
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	136, 297
BfaI	CTAG	1 cut(s)	285
BisI	GCNGC	3 cut(s)	45, 48, 372
BlsI	GCNGC	3 cut(s)	46, 49, 373
Bme1390I	CCNGG	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	241, 372
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 378
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	2 cut(s)	241, 372
BseGI	GGATG	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	141, 378
BseMI	GCAATG	1 cut(s)	66
BseRI	GAGGAG	2 cut(s)	25, 124
BseXI	GCAGC	2 cut(s)	56, 59
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	141, 378
BsmAI	GTCTC	2 cut(s)	136, 297
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	280
BspACI	CCGC	3 cut(s)	372, 374, 403
BspANI	GGCC	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	2 cut(s)	241, 372
BssMI	GATC	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	7, 130, 368
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	257
BstFNI	CGCG	1 cut(s)	374
BstKTI	GATC	1 cut(s)	283
BstMAI	GTCTC	2 cut(s)	136, 297
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 333
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	56, 59
BstX2I	RGATCY	1 cut(s)	280
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	372
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	338
Cfr42I	CCGCGG	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	211, 329
CviJI	RGCY	3 cut(s)	50, 153, 419
CviKI_1	RGCY	3 cut(s)	50, 153, 419
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	214, 332
FaiI	YATR	2 cut(s)	212, 330
FatI	CATG	2 cut(s)	210, 328
Fnu4HI	GCNGC	3 cut(s)	45, 48, 372
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	45, 48, 372
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	3 cut(s)	45, 48, 372
HaeIII	GGCC	1 cut(s)	153
Hin1II	CATG	2 cut(s)	214, 332
HinfI	GANTC	3 cut(s)	197, 218, 237
HphI	GGTGA	3 cut(s)	82, 82, 118
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	3 cut(s)	202, 223, 361
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	3 cut(s)	7, 130, 368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 333
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	214, 332
KpnI	GGTACC	1 cut(s)	276
KspI	CCGCGG	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	280
LpnPI	CCDG	4 cut(s)	131, 200, 227, 254
Lsp1109I	GCAGC	2 cut(s)	56, 59
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	262, 302
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	2 cut(s)	31, 246
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	4 cut(s)	177, 224, 322, 383
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	3 cut(s)	46, 145, 164
MseI	TTAA	1 cut(s)	424
MspA1I	CMGCKG	2 cut(s)	374, 419
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	56, 333
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	2 cut(s)	214, 332
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	262, 302
PfeI	GAWTC	2 cut(s)	197, 237
PkrI	GCNGC	3 cut(s)	46, 49, 373
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SacII	CCGCGG	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	3 cut(s)	45, 48, 372
Sau3AI	GATC	1 cut(s)	280
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	4 cut(s)	52, 274, 278, 421
SfaNI	GCATC	1 cut(s)	120
Sfr303I	CCGCGG	1 cut(s)	375
SgrBI	CCGCGG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	177, 224, 322, 383
SsiI	CCGC	3 cut(s)	372, 374, 403
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	7, 130, 368
TaqII	GACCGA	1 cut(s)	321
TasI	AATT	4 cut(s)	177, 224, 322, 383
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	2 cut(s)	197, 237
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	262, 302
TseI	GCWGC	2 cut(s)	44, 47
Tsp45I	GTSAC	2 cut(s)	262, 302
TspDTI	ATGAA	2 cut(s)	76, 199
TspGWI	ACGGA	1 cut(s)	250
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.