Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

44223687 .. 44224097

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00250430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGAGCTAGTGTAGTCAACATGAGTGGACACTCCTCATCAGCAGCAGTTCTGTTAGCAGTAATGGTGGTGACGATGACTATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCAGACAATCACCGTCTCCTCTACTCGGTGCGAAGGCCTCAACGACGACCTGTCGTGCCTAATTGGACAGACCGATTTGGATTCCGACGAGTTCATGCTGGACTCCGAATTCAGTAGAAGAATCTTGGCTGGTGGACCTATAACCTTCACTGGTGACACTGGAAATGGTGGAAAGGCCGTGTCGTGTGACCGAAATGGGTTTCCTCCGTGCCACACTGACGTTGCAAACAAAAAACCCCCACCACCAAACTGCGACAAGGCGCCTACCAATCGCGATTGCTACCACTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.6

Weight (kDa)

5.15

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	1 cut(s)	390
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	141
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	151, 291
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	4 cut(s)	82, 82, 118, 281
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	56
BceAI	ACGGC	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	380
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	251
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	378
BmsI	GCATC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	271, 280
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	271, 280
BseRI	GAGGAG	2 cut(s)	25, 124
BseXI	GCAGC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	390
BshFI	GGCC	2 cut(s)	153, 293
BshNI	GGYRCC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	1 cut(s)	136
BsmBI	CGTCTC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	153, 293
Bsp68I	TCGCGA	1 cut(s)	390
BspANI	GGCC	2 cut(s)	153, 293
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	271, 280
BssNI	GRCGYC	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	377
BstFNI	CGCG	1 cut(s)	390
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstMAI	GTCTC	1 cut(s)	136
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	153, 293
BtsIMutI	CAGTG	3 cut(s)	264, 273, 330
BtuMI	TCGCGA	1 cut(s)	390
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	2 cut(s)	22, 211
CviJI	RGCY	4 cut(s)	8, 153, 245, 293
CviKI_1	RGCY	4 cut(s)	8, 153, 245, 293
DinI	GGCGCC	1 cut(s)	378
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	224
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	25, 214
FaiI	YATR	4 cut(s)	23, 83, 212, 257
FatI	CATG	2 cut(s)	21, 210
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	45
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	153, 293
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	2 cut(s)	25, 214
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	197, 218, 237
HphI	GGTGA	4 cut(s)	82, 82, 118, 281
Hpy166II	GTNNAC	3 cut(s)	19, 29, 251
Hpy188I	TCNGA	2 cut(s)	202, 223
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	3 cut(s)	19, 29, 251
Hpy99I	CGWCG	2 cut(s)	164, 206
HpyAV	CCTTC	2 cut(s)	143, 271
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	2 cut(s)	25, 214
HspAI	GCGC	1 cut(s)	377
KasI	GGCGCC	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	131, 179, 200, 231, 252, 261
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	3 cut(s)	70, 269, 302
MboII	GAAGA	1 cut(s)	246
MluCI	AATT	2 cut(s)	177, 224
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	4 cut(s)	46, 145, 164, 330
MvnI	CGCG	1 cut(s)	390
NarI	GGCGCC	1 cut(s)	377
NlaIII	CATG	2 cut(s)	25, 214
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	3 cut(s)	70, 269, 302
NruI	TCGCGA	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	197, 237
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	251
RruI	TCGCGA	1 cut(s)	390
SatI	GCNGC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	212
SetI	ASST	5 cut(s)	10, 168, 256, 263, 339
SfaNI	GCATC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	2 cut(s)	177, 224
SseBI	AGGCCT	1 cut(s)	153
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	339
TaqII	GACCGA	2 cut(s)	203, 321
TasI	AATT	2 cut(s)	177, 224
TfiI	GAWTC	2 cut(s)	197, 237
TscAI	CASTG	3 cut(s)	271, 280, 337
TseFI	GTSAC	3 cut(s)	70, 269, 302
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	3 cut(s)	70, 269, 302
TspDTI	ATGAA	2 cut(s)	76, 199
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	3 cut(s)	271, 280, 337
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.