Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Reverse (-)

12816493 .. 12816858

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGTCCCCATTCAGTAGCAGCCGTGATCATGATCCTGATCACCCTTGTCACCACAGCTCACTGCATCAACAACAACACTAGATCATCATCAACTGGGTGCGATGGCGGCCGCACCGACGATCCCTCGTGCCTTATCGGAGGGACGACTGACTTGGACTCGGATGAGTTCATGATGGATTCCGAAATCAGCAGAAGAATCCTGGCTCGAAACTACCCCACTAAGAATGCATTGGATATTTCGAAGGCTGTGTCGTGTGACCGAAGCAATCGTCAATGCCACGCCGGTCAGAAAAATCCGAACCCTCCAAACAACTGTGCCAAGGACACCAGTAGACACAACCGCGGCTGCTACCGCTACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.26

Weight (kDa)

8.21

Isoelectric Point (pI)

61.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	334
AccII	CGCG	1 cut(s)	345
AciI	CCGC	5 cut(s)	108, 112, 343, 345, 355
AclWI	GGATC	2 cut(s)	28, 116
AcoI	YGGCCR	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	2 cut(s)	28, 116
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	20, 348
ArsI	GACNNNNNNTTYG	4 cut(s)	236, 256, 268, 288
AsuHPI	GGTGA	2 cut(s)	34, 43
AsuII	TTCGAA	1 cut(s)	242
BauI	CACGAG	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	32, 335
BccI	CCATC	2 cut(s)	98, 169
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	2 cut(s)	27, 39
BfaI	CTAG	2 cut(s)	81, 364
BisI	GCNGC	5 cut(s)	21, 109, 112, 346, 349
BlsI	GCNGC	5 cut(s)	22, 110, 113, 347, 350
Bme1390I	CCNGG	1 cut(s)	203
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	75
BmuI	ACTGGG	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	242
BsaBI	GATNNNNATC	3 cut(s)	32, 38, 88
BsaJI	CCNNGG	2 cut(s)	321, 343
Bse118I	RCCGGY	1 cut(s)	284
Bse1I	ACTGG	2 cut(s)	100, 330
Bse8I	GATNNNNATC	3 cut(s)	32, 38, 88
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	2 cut(s)	321, 343
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	3 cut(s)	32, 38, 88
BseNI	ACTGG	2 cut(s)	100, 330
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	32, 335
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	27, 33, 39, 83, 121
BspACI	CCGC	5 cut(s)	108, 112, 343, 345, 355
BspANI	GGCC	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	345
BspHI	TCATGA	2 cut(s)	30, 171
BspPI	GGATC	2 cut(s)	28, 116
BspT104I	TTCGAA	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	100, 330
BssAI	RCCGGY	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	321, 343
BssMI	GATC	5 cut(s)	27, 33, 39, 83, 121
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	317
BstBI	TTCGAA	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	222
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	345
BstKTI	GATC	5 cut(s)	30, 36, 42, 86, 124
BstMBI	GATC	5 cut(s)	27, 33, 39, 83, 121
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 354
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	32, 335
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	61
CciI	TCATGA	2 cut(s)	30, 171
CciNI	GCGGCCGC	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	284
Cfr42I	CCGCGG	1 cut(s)	346
CviAII	CATG	2 cut(s)	31, 172
CviJI	RGCY	6 cut(s)	23, 59, 111, 206, 248, 348
CviKI_1	RGCY	6 cut(s)	23, 59, 111, 206, 248, 348
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	5 cut(s)	29, 35, 41, 85, 123
DpnII	GATC	5 cut(s)	27, 33, 39, 83, 121
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	34, 175
FaiI	YATR	2 cut(s)	32, 173
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	2 cut(s)	30, 171
FbaI	TGATCA	2 cut(s)	27, 39
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	5 cut(s)	21, 109, 112, 346, 349
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	5 cut(s)	21, 109, 112, 346, 349
FspBI	CTAG	2 cut(s)	81, 364
GluI	GCNGC	5 cut(s)	21, 109, 112, 346, 349
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	2 cut(s)	34, 175
HinfI	GANTC	4 cut(s)	4, 158, 179, 198
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	2 cut(s)	34, 43
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	5 cut(s)	140, 163, 184, 291, 300
Hpy188III	TCNNGA	3 cut(s)	31, 37, 172
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	66, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 354
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	34, 175
Ksp22I	TGATCA	2 cut(s)	27, 39
KspI	CCGCGG	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	27, 33, 39, 83, 121
LpnPI	CCDG	6 cut(s)	50, 81, 188, 215, 298, 343
Lsp1109I	GCAGC	2 cut(s)	32, 335
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	81, 364
MaeIII	GTNAC	2 cut(s)	49, 257
MalI	GATC	5 cut(s)	29, 35, 41, 85, 123
MboI	GATC	5 cut(s)	27, 33, 39, 83, 121
MboII	GAAGA	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	13, 152
MnlI	CCTC	3 cut(s)	134, 136, 315
Mph1103I	ATGCAT	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	345
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	345
MwoI	GCNNNNNNNGC	2 cut(s)	108, 354
NdeII	GATC	5 cut(s)	27, 33, 39, 83, 121
NlaIII	CATG	2 cut(s)	34, 175
NmuCI	GTSAC	2 cut(s)	49, 257
NotI	GCGGCCGC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	242
PagI	TCATGA	2 cut(s)	30, 171
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	2 cut(s)	179, 198
PkrI	GCNGC	5 cut(s)	22, 110, 113, 347, 350
PleI	GAGTC	2 cut(s)	12, 152
PpsI	GAGTC	2 cut(s)	12, 152
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
SacII	CCGCGG	1 cut(s)	346
SatI	GCNGC	5 cut(s)	21, 109, 112, 346, 349
Sau3AI	GATC	5 cut(s)	27, 33, 39, 83, 121
SchI	GAGTC	2 cut(s)	13, 152
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	1 cut(s)	61
SfaNI	GCATC	1 cut(s)	75
Sfr303I	CCGCGG	1 cut(s)	346
SfuI	TTCGAA	1 cut(s)	242
SgrBI	CCGCGG	1 cut(s)	346
SsiI	CCGC	5 cut(s)	108, 112, 343, 345, 355
SspMI	CTAG	2 cut(s)	81, 364
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	208, 242
TaqII	GACCGA	1 cut(s)	276
TauI	GCSGC	3 cut(s)	111, 114, 348
TfiI	GAWTC	2 cut(s)	179, 198
TscAI	CASTG	1 cut(s)	68
TseFI	GTSAC	2 cut(s)	49, 257
TseI	GCWGC	2 cut(s)	20, 348
Tsp45I	GTSAC	2 cut(s)	49, 257
TspDTI	ATGAA	1 cut(s)	160
TspRI	CASTG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	334
XspI	CTAG	2 cut(s)	81, 364
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.