Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Reverse (-)

23474092 .. 23475556

Gene Structure 1465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG239700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGTGGATACTCCTCATCAGCAGCAGTTCTGTTAGCAATGATGATGGTGATGATGACAATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCAGACAATCACCGTCTCCTCCACTTGGTGCGATGGCCTCAACGACGACTTGTCGTGCCTAATTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAGTTCAGCAGAAGAATCTTGGGCGGCGGAGGTATAAGCTTCACTGCTGGCACTGGAAATGCTGGACATGCTGTGTCGTGTACCCGAGGCAACCCTCCAAAACCGTGCCACCCTGAGGGAAACTCGAACCCCCCTCCACCACAATGCGCCGTGGCGGGTACCAATCGCGATTGCTACCGCTATAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.87

Weight (kDa)

5.12

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	359
AccB1I	GGYRCC	1 cut(s)	359
AccII	CGCG	1 cut(s)	369
AciI	CCGC	4 cut(s)	225, 228, 356, 379
AcuI	CTGAAG	1 cut(s)	70
AdeI	CACNNNGTG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	283, 361
AfiI	CCNNNNNNNGG	2 cut(s)	120, 316
AhdI	GACNNNNNGTC	1 cut(s)	145
AloI	GAACNNNNNNTCC	2 cut(s)	188, 220
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw26I	GTCTC	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	61, 61, 97
AvaI	CYCGRG	1 cut(s)	285
AxyI	CCTNAGG	1 cut(s)	315
BanI	GGYRCC	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	2 cut(s)	40, 122
BceAI	ACGGC	1 cut(s)	335
BcoDI	GTCTC	1 cut(s)	115
BisI	GCNGC	2 cut(s)	24, 226
BlsI	GCNGC	2 cut(s)	25, 227
BmeRI	GACNNNNNGTC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	285
BmiI	GGNNCC	1 cut(s)	361
BmsI	GCATC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
BsaJI	CCNNGG	2 cut(s)	286, 351
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 316
Bse1I	ACTGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	286, 351
BseLI	CCNNNNNNNGG	2 cut(s)	120, 316
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	4, 103
BseXI	GCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	120, 316
BsmAI	GTCTC	1 cut(s)	115
BsmBI	CGTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	285
Bsp68I	TCGCGA	1 cut(s)	369
BspACI	CCGC	4 cut(s)	225, 228, 356, 379
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	361
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	286, 351
Bst4CI	ACNGT	2 cut(s)	109, 306
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	1 cut(s)	351
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	350
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	272
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 252
BtuMI	TCGCGA	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	282, 360
CviAII	CATG	2 cut(s)	190, 269
CviJI	RGCY	2 cut(s)	132, 240
CviKI_1	RGCY	2 cut(s)	132, 240
CviQI	GTAC	2 cut(s)	282, 360
DdeI	CTNAG	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	123
DriI	GACNNNNNGTC	1 cut(s)	145
Eam1105I	GACNNNNNGTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	70
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	2 cut(s)	193, 272
FaiI	YATR	4 cut(s)	191, 236, 270, 384
FatI	CATG	2 cut(s)	189, 268
FauI	CCCGC	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	24, 226
Fsp4HI	GCNGC	2 cut(s)	24, 226
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	2 cut(s)	24, 226
HaeIII	GGCC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	193, 272
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	3 cut(s)	176, 197, 216
HphI	GGTGA	3 cut(s)	61, 61, 97
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	181, 202
Hpy188III	TCNNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	109, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	193, 272
HspAI	GCGC	1 cut(s)	348
KpnI	GGTACC	1 cut(s)	363
LpnPI	CCDG	6 cut(s)	110, 179, 234, 240, 249, 327
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	99
MboII	GAAGA	1 cut(s)	225
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	8 cut(s)	25, 124, 143, 224, 281, 306, 310, 345
MslI	CAYNNNNRTG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	193, 272
NlaIV	GGNNCC	1 cut(s)	361
NruI	TCGCGA	1 cut(s)	369
NspI	RCATGY	1 cut(s)	272
PfeI	GAWTC	2 cut(s)	176, 216
PkrI	GCNGC	2 cut(s)	25, 227
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	361
RruI	TCGCGA	1 cut(s)	369
RsaI	GTAC	2 cut(s)	283, 361
RsaNI	GTAC	2 cut(s)	282, 360
RseI	CAYNNNNRTG	1 cut(s)	343
SatI	GCNGC	2 cut(s)	24, 226
SchI	GAGTC	1 cut(s)	191
SetI	ASST	2 cut(s)	235, 242
SfaNI	GCATC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	4 cut(s)	225, 228, 356, 379
TaaI	ACNGT	2 cut(s)	109, 306
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	176, 216
TscAI	CASTG	2 cut(s)	250, 259
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	2 cut(s)	55, 178
TspRI	CASTG	2 cut(s)	250, 259
XceI	RCATGY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.