Rroxscaffold_3G00250440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002271
Physical Location & Seq
Forward (+)
44224927 .. 44228239
3313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250440.1

Sequence Viewer

Length: 285 bp
ATGACCCTTCTCACCGCGACTCGAAGCATCAACGACACTACTGTCGCTGCTACCTCATCTTGGTGCCTCAATGACGACACATCATGCCTCACCGGAGAGACTGACGTGGAGTCGAAGGAGTTCATGATGGATTCGGAAATCAGCAGAAGAATTCTGAATGGAACTTCAAGCTACTCTAATACACCCTCGAATTCTACCAGTGAACCTAAGAATTATCCAATAAGTAATCTAGGCATCACTCTAAAACATAATTCTAGAATACGCCGGGTGTATGAGATGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.46

Weight (kDa)

5.24

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AccB1I GGYRCC 1 cut(s) 63
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 15
AcsI RAATTY 2 cut(s) 150, 190
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 1 cut(s) 168
AhdI GACNNNNNGTC 1 cut(s) 109
AjiI CACGTC 1 cut(s) 106
AluBI AGCT 1 cut(s) 171
AluI AGCT 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 150, 190
Asp700I GAANNNNTTC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 2 cut(s) 4, 82
BanI GGYRCC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 34
BccI CCATC 1 cut(s) 121
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 2 cut(s) 230, 255
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 1 cut(s) 266
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 3 cut(s) 36, 243, 267
BpuMI CCSGG 1 cut(s) 266
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 63
BsiSI CCGG 2 cut(s) 93, 265
BslI CCNNNNNNNGG 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 92
BspACI CCGC 1 cut(s) 15
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BsrI ACTGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 207, 282
BstFNI CGCG 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 264
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 34
BtrI CACGTC 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 205
CciI TCATGA 1 cut(s) 123
CviAII CATG 2 cut(s) 84, 124
CviJI RGCY 1 cut(s) 171
CviKI_1 RGCY 1 cut(s) 171
DdeI CTNAG 2 cut(s) 207, 282
DrdI GACNNNNNNGTC 1 cut(s) 41
DriI GACNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 41
Eam1105I GACNNNNNGTC 1 cut(s) 109
EcoRI GAATTC 2 cut(s) 150, 190
FaeI CATG 2 cut(s) 87, 127
FaiI YATR 4 cut(s) 85, 125, 249, 273
FatI CATG 2 cut(s) 83, 123
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 230, 255
GluI GCNGC 1 cut(s) 48
HapII CCGG 2 cut(s) 93, 265
Hin1II CATG 2 cut(s) 87, 127
HinfI GANTC 3 cut(s) 19, 110, 131
HpaII CCGG 2 cut(s) 93, 265
HphI GGTGA 2 cut(s) 4, 82
Hpy166II GTNNAC 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 136, 156
Hpy188III TCNNGA 2 cut(s) 124, 255
Hpy8I GTNNAC 1 cut(s) 203
HpyAV CCTTC 2 cut(s) 17, 109
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 207, 282
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 2 cut(s) 87, 127
LpnPI CCDG 3 cut(s) 106, 211, 278
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 3 cut(s) 36, 243, 267
MaeI CTAG 2 cut(s) 230, 255
MaeII ACGT 1 cut(s) 105
MboII GAAGA 1 cut(s) 159
MluCI AATT 4 cut(s) 150, 190, 211, 250
MlyI GAGTC 2 cut(s) 13, 119
MnlI CCTC 4 cut(s) 64, 77, 98, 196
MroXI GAANNNNTTC 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 61
MspI CCGG 2 cut(s) 93, 265
MspR9I CCNGG 1 cut(s) 266
MvnI CGCG 1 cut(s) 17
NciI CCSGG 1 cut(s) 266
NlaIII CATG 2 cut(s) 87, 127
NlaIV GGNNCC 1 cut(s) 65
PagI TCATGA 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 2 cut(s) 13, 118
PpsI GAGTC 2 cut(s) 13, 118
PspN4I GGNNCC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 61
SatI GCNGC 1 cut(s) 48
SchI GAGTC 2 cut(s) 13, 119
ScrFI CCNGG 1 cut(s) 266
SetI ASST 4 cut(s) 56, 108, 173, 208
SfaNI GCATC 3 cut(s) 36, 243, 267
SmiMI CAYNNNNRTG 1 cut(s) 61
Sse9I AATT 4 cut(s) 150, 190, 211, 250
SsiI CCGC 1 cut(s) 15
SspMI CTAG 2 cut(s) 230, 255
StyD4I CCNGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 108
TaqI TCGA 3 cut(s) 22, 113, 188
TasI AATT 4 cut(s) 150, 190, 211, 250
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 1 cut(s) 205
TseI GCWGC 1 cut(s) 47
TspDTI ATGAA 1 cut(s) 112
TspRI CASTG 1 cut(s) 205
XapI RAATTY 2 cut(s) 150, 190
XbaI TCTAGA 1 cut(s) 254
XmnI GAANNNNTTC 1 cut(s) 119
XspI CTAG 2 cut(s) 230, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.