Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002271

Physical Location & Seq

Genomic Coordinates Forward (+)

45687661 .. 45688068

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGAGTTGGTGTGGTCAAGATGAGTGGACGCTCCTCATCAGCGGCAGCTCTGTTAGCAATGATGGTGGTGATGATGACTATGTCCATCACCAAAACTGATTGCTTCAGCATCAACCAGACGATCACCGTCTCCTCTACTTGGTGTGATGGCCTCAAGGACGACTTGTCGCGCCTAACTGGACAGACTGATTTGGATTTGGACGAGTTCATGCTGGACTCCGAATTCAGCAGAATAATCTTGGCTTGCCAAGGATTCTACTCTGGTAAGACCTTAAATCCTGCAACGGCTGTGTCATGTGACCGAAAGGGGTTTCCTCCGTGCCTCACTAGCGGGGAAAACAAGAACCCCCCAGCAGCATTCTGCAACGAGGCGCCTACCAATAGAGACTGCTACCGCTATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.75

Weight (kDa)

5.31

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002271)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g21290
prunus_persica	Prupe.5G044300_v2.0.a1
pyrus_communis	pycom17g06790
rosa_chinensis	RchiOBHm_Chr7g0208491 RchiOBHm_Chr7g0208531 RchiOBHm_Chr7g0208581 RchiOBHm_Chr7g0208601
rosa_laevigata	RLG00000003207 RLG00000003208 RLG00000003209 RLG00000003210 RLG00000003211
rosa_multiflora	Rmu_co8287091.1_g000001 Rmu_co8292411.1_g000001 Rmu_sc0007490.1_g000010 Rmu_sc0013240.1_g000006
rosa_roxburghii	Rroxscaffold_3G00250410 Rroxscaffold_3G00250430 Rroxscaffold_3G00250440 Rroxscaffold_3G00250450 Rroxscaffold_3G00250480 Rroxscaffold_3G00250490
rosa_rugosa	Rorug07G0104600 Rorug07G0104700 Rorug07G0104900 Rorug07G0105100
rosa_samantha	Rh7AG238900 Rh7AG239200 Rh7AG239600 Rh7AG239700 Rh7BG234400 Rh7BG234500 Rh7BG234700 Rh7BG235000 Rh7BG235100 Rh7CG254100 Rh7CG254300 Rh7CG254500 Rh7CG254600 Rh7DG244900 Rh7DG245200 Rh7DG245600 Rh7DG245700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccII	CGCG	1 cut(s)	172
AciI	CCGC	3 cut(s)	44, 333, 397
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	91
AcyI	GRCGYC	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	141
AhdI	GACNNNNNGTC	1 cut(s)	166
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	136, 381
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	47, 356
ApoI	RAATTY	1 cut(s)	224
AspLEI	GCGC	2 cut(s)	174, 376
AsuHPI	GGTGA	3 cut(s)	82, 82, 118
BanI	GGYRCC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	59, 368
BccI	CCATC	3 cut(s)	58, 95, 143
BceAI	ACGGC	1 cut(s)	303
BcoDI	GTCTC	2 cut(s)	136, 381
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	377
BisI	GCNGC	3 cut(s)	45, 48, 357
BlsI	GCNGC	3 cut(s)	46, 49, 358
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	375
BmsI	GCATC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	2 cut(s)	25, 124
BseXI	GCAGC	2 cut(s)	59, 368
BseYI	CCCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	2 cut(s)	136, 381
BsmBI	CGTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	123
BspACI	CCGC	3 cut(s)	44, 333, 397
BspANI	GGCC	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	375
BspT107I	GGYRCC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	247
BstFNI	CGCG	1 cut(s)	172
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	174, 376
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	136, 381
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 330
BstUI	CGCG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	59, 368
BsuRI	GGCC	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	2 cut(s)	174, 376
CseI	GACGC	1 cut(s)	39
CspCI	CAANNNNNGTGG	4 cut(s)	7, 42, 48, 83
CviAII	CATG	2 cut(s)	211, 297
CviJI	RGCY	4 cut(s)	50, 153, 245, 290
CviKI_1	RGCY	4 cut(s)	50, 153, 245, 290
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	214, 300
FaiI	YATR	4 cut(s)	83, 212, 298, 402
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	2 cut(s)	210, 296
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	45, 48, 357
Fsp4HI	GCNGC	3 cut(s)	45, 48, 357
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	2 cut(s)	173, 375
GluI	GCNGC	3 cut(s)	45, 48, 357
GsaI	CCCAGC	1 cut(s)	356
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	153
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	174, 376
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	214, 300
Hin6I	GCGC	2 cut(s)	172, 374
HinP1I	GCGC	2 cut(s)	172, 374
HinfI	GANTC	2 cut(s)	218, 255
HphI	GGTGA	3 cut(s)	82, 82, 118
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	284, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 330
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	214, 300
HspAI	GCGC	2 cut(s)	172, 374
KasI	GGCGCC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	131, 165, 200, 249, 294, 366
Lsp1109I	GCAGC	2 cut(s)	59, 368
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MluCI	AATT	2 cut(s)	224, 403
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	46, 145, 164, 327, 335, 364
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	359
MvnI	CGCG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	56, 330
NarI	GGCGCC	1 cut(s)	374
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	214, 300
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	299
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	255
PflFI	GACNNNGTC	1 cut(s)	82
PkrI	GCNGC	3 cut(s)	46, 49, 358
PleI	GAGTC	1 cut(s)	212
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	212
PspFI	CCCAGC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	3 cut(s)	45, 48, 357
Sau3AI	GATC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	212
SetI	ASST	2 cut(s)	52, 275
SfaNI	GCATC	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	224, 403
SsiI	CCGC	3 cut(s)	44, 333, 397
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	130
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	224, 403
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	47, 356
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	199
TspGWI	ACGGA	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	224
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.