Rh7CG254600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002271
Physical Location & Seq
Reverse (-)
24610463 .. 24612187
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG254600.1

Sequence Viewer

Length: 411 bp
ATGAGAGCTAGTGTAGTGAAGATGAGCGGACACTCCTCATCAGCGACCTTTCTGTTAGCAATGATGATGGTGATGATGACAATGTTCATCACCAAAACTGATTGCTTCAGCATCAACCAGACAATCACCGTCTCCTCCACTTGGTGCGATGGCCTCAACGACGACTTGTCGTGCCTAATTGGACAGACTGATTTGGATTCGGACGAGTTCATGCTGGACTCCGAATTCAGCAGAAGAATCTTGGCTGCAACTCCACCATCCTACTCTGGTAAGACCTCAAATCCTGGAACGGCTGTGTCGTGTGACCGAAACGGGTTTCCTCCGTGCCACACTAGCGGGGGAAATAAGAAACCCCCACCAGAACACTGCGCCAAGGAGCCTACCAATCGCGCTTGCTACGGCTATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.75

Weight (kDa)

5.83

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 1 cut(s) 390
AciI CCGC 2 cut(s) 27, 336
AcsI RAATTY 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 91
AdeI CACNNNGTG 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 141
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 136
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 2 cut(s) 371, 392
AsuHPI GGTGA 3 cut(s) 82, 82, 118
BbvI GCAGC 1 cut(s) 232
BccI CCATC 3 cut(s) 61, 143, 265
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 2 cut(s) 9, 333
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 285
BmeRI GACNNNNNGTC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 372
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 1 cut(s) 257
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 1 cut(s) 66
BseRI GAGGAG 2 cut(s) 25, 124
BseXI GCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 390
BshFI GGCC 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 153
BspACI CCGC 2 cut(s) 27, 336
BspANI GGCC 1 cut(s) 153
BspFNI CGCG 1 cut(s) 390
BspLI GGNNCC 1 cut(s) 378
BsrBI CCGCTC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 394
BstF5I GGATG 1 cut(s) 257
BstFNI CGCG 1 cut(s) 390
BstHHI GCGC 2 cut(s) 371, 392
BstMAI GTCTC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 333
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 232
BsuRI GGCC 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 257
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 394
CfoI GCGC 2 cut(s) 371, 392
CviAII CATG 1 cut(s) 211
CviJI RGCY 6 cut(s) 8, 153, 245, 293, 379, 402
CviKI_1 RGCY 6 cut(s) 8, 153, 245, 293, 379, 402
DraIII CACNNNGTG 1 cut(s) 144
DriI GACNNNNNGTC 1 cut(s) 166
Eam1105I GACNNNNNGTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 1 cut(s) 214
FaiI YATR 1 cut(s) 212
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 9, 333
GlaI GCGC 2 cut(s) 370, 391
GluI GCNGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 153
HhaI GCGC 2 cut(s) 371, 392
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 2 cut(s) 369, 390
HinP1I GCGC 2 cut(s) 369, 390
HinfI GANTC 3 cut(s) 197, 218, 237
HphI GGTGA 3 cut(s) 82, 82, 118
Hpy188I TCNGA 2 cut(s) 202, 223
Hpy99I CGWCG 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 333
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 2 cut(s) 369, 390
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 6 cut(s) 131, 200, 252, 270, 297, 372
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 1 cut(s) 120
MaeI CTAG 2 cut(s) 9, 333
MaeIII GTNAC 1 cut(s) 302
MbiI CCGCTC 1 cut(s) 27
MboII GAAGA 2 cut(s) 31, 246
MluCI AATT 2 cut(s) 177, 224
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 5 cut(s) 46, 145, 164, 286, 330
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 333
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 2 cut(s) 197, 237
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 378
SatI GCNGC 1 cut(s) 246
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 285
SetI ASST 3 cut(s) 10, 50, 278
SfaNI GCATC 1 cut(s) 120
Sse9I AATT 2 cut(s) 177, 224
SsiI CCGC 2 cut(s) 27, 336
SspMI CTAG 2 cut(s) 9, 333
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 130
TaqII GACCGA 1 cut(s) 321
TasI AATT 2 cut(s) 177, 224
TfiI GAWTC 2 cut(s) 197, 237
TscAI CASTG 1 cut(s) 371
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 2 cut(s) 76, 199
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 1 cut(s) 371
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 9, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.