AT1G32690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015969
Physical Location & Seq
Reverse (-)
11820872 .. 11821824
953 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32690.1

Sequence Viewer

Length: 603 bp
ATGGACGAAGATGGTTTTTCACAATGTTCAAAACACTTTTCAAAACGCGGTTATTTTAGCGGTGGGGGCGTTTGTCCATTTTGTCTCCACGAACGTCTCTCTTCTCTTTGTCCAGATTGTGCTCACGATCTTCCTTGTTCGTGTAGCTCACGCGCCGCCGTATCTTTCTCTCCTTCGTCTTCTTCGTCTTCCTCGTCGTTCTCTATCTTCGCCGGAGATATCAGTTTTAATATATCCGGCGTTGGATCGGTGGGCCGAGTCGCGAGTTTGATTGAATGTGAACCGGCGTTTCGGAGATCGAAATCTATGGCGATCCCGATTAAACCGGATTCGGTTATTGATTCCGGTTTGGATCATGGTAGGAGTAAGAAAACGTCGTCGTTTTGGAGAATTTTTATGGGAAACAGAGGAGATACTAAACCGGCTATTATGAAGAAATCAAGATCCGTTGCGGTCGCCGGAGAATTTGGATTTTCTCCGGTTCCGGTTCCGGCGACCGGGAAGGGTAAAGGCTGGAATTTTCCGAGTCCGATCAAGGTTTTCCGGCAATCTCGAGTCTCGAAGATGATATTTCAACAACGGTCTCCATTGTATAGAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

200

Amino Acids

21.55

Weight (kDa)

9.72

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 48, 153, 263
AciI CCGC 4 cut(s) 48, 60, 156, 452
AclWI GGATC 4 cut(s) 253, 307, 360, 438
AcsI RAATTY 3 cut(s) 390, 464, 517
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 4 cut(s) 30, 42, 275, 575
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 4 cut(s) 89, 101, 562, 588
AlwI GGATC 4 cut(s) 253, 307, 360, 438
Ama87I CYCGRG 1 cut(s) 552
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 3 cut(s) 390, 464, 517
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 552
BbsI GAAGAC 2 cut(s) 171, 180
Bbv12I GWGCWC 1 cut(s) 124
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 143
BcnI CCSGG 1 cut(s) 499
BcoDI GTCTC 4 cut(s) 89, 101, 562, 588
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 499
BmeT110I CYCGRG 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 483, 489
BmrFI CCNGG 1 cut(s) 499
BpiI GAAGAC 2 cut(s) 171, 180
BpuMI CCSGG 1 cut(s) 499
BsaBI GATNNNNATC 1 cut(s) 301
BsaI GGTCTC 1 cut(s) 588
BsaWI WCCGGW 4 cut(s) 325, 344, 478, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse118I RCCGGY 2 cut(s) 283, 421
Bse8I GATNNNNATC 1 cut(s) 301
BseJI GATNNNNATC 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 497
BseRI GAGGAG 1 cut(s) 423
Bsh1236I CGCG 3 cut(s) 48, 153, 263
Bsh1285I CGRYCG 2 cut(s) 456, 498
BshFI GGCC 1 cut(s) 255
BsiEI CGRYCG 2 cut(s) 456, 498
BsiHKAI GWGCWC 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 552
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 4 cut(s) 89, 101, 562, 588
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 588
BsoBI CYCGRG 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
Bsp68I TCGCGA 1 cut(s) 263
BspACI CCGC 4 cut(s) 48, 60, 156, 452
BspANI GGCC 1 cut(s) 255
BspFNI CGCG 3 cut(s) 48, 153, 263
BspLI GGNNCC 2 cut(s) 483, 489
BspPI GGATC 4 cut(s) 253, 307, 360, 438
BspTNI GGTCTC 1 cut(s) 588
BsrFI RCCGGY 2 cut(s) 283, 421
BssAI RCCGGY 2 cut(s) 283, 421
BssMI GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
Bst4CI ACNGT 1 cut(s) 582
Bst6I CTCTTC 1 cut(s) 106
BstFNI CGCG 3 cut(s) 48, 153, 263
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 7 cut(s) 130, 248, 299, 315, 355, 446, 534
BstMAI GTCTC 4 cut(s) 89, 101, 562, 588
BstMBI GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
BstMCI CGRYCG 2 cut(s) 456, 498
BstMWI GCNNNNNNNGC 1 cut(s) 66
BstSCI CCNGG 1 cut(s) 497
BstUI CGCG 3 cut(s) 48, 153, 263
BstV2I GAAGAC 2 cut(s) 171, 180
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 1 cut(s) 255
BtuMI TCGCGA 1 cut(s) 263
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 2 cut(s) 283, 421
Cfr13I GGNCC 1 cut(s) 253
CviAII CATG 1 cut(s) 356
CviJI RGCY 4 cut(s) 147, 255, 425, 513
CviKI_1 RGCY 4 cut(s) 147, 255, 425, 513
DpnI GATC 7 cut(s) 129, 247, 298, 314, 354, 445, 533
DpnII GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 588
Eco32I GATATC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 552
EcoRV GATATC 1 cut(s) 220
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 1 cut(s) 359
FaiI YATR 6 cut(s) 233, 308, 357, 398, 431, 594
FatI CATG 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 359
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 5 cut(s) 258, 329, 341, 526, 555
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 3 cut(s) 294, 525, 531
Hpy188III TCNNGA 7 cut(s) 113, 125, 262, 316, 441, 552, 559
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 3 cut(s) 199, 379, 382
HpyAV CCTTC 2 cut(s) 183, 496
HpyCH4III ACNGT 1 cut(s) 582
HpyCH4IV ACGT 2 cut(s) 94, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 66
HpySE526I ACGT 2 cut(s) 94, 374
Hsp92II CATG 1 cut(s) 359
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
MaeII ACGT 2 cut(s) 94, 374
MalI GATC 7 cut(s) 129, 247, 298, 314, 354, 445, 533
MboI GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
MboII GAAGA 9 cut(s) 20, 93, 122, 171, 174, 180, 199, 445, 574
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 390, 464, 517
MlyI GAGTC 3 cut(s) 267, 535, 564
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 3 cut(s) 202, 401, 590
MseI TTAA 2 cut(s) 228, 321
MspR9I CCNGG 1 cut(s) 499
MvnI CGCG 3 cut(s) 48, 153, 263
MwoI GCNNNNNNNGC 1 cut(s) 66
NciI CCSGG 1 cut(s) 499
NdeII GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
NlaIII CATG 1 cut(s) 359
NlaIV GGNNCC 2 cut(s) 483, 489
NmeAIII GCCGAG 1 cut(s) 281
NruI TCGCGA 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 182, 191
PfeI GAWTC 2 cut(s) 329, 341
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 3 cut(s) 266, 534, 563
PpsI GAGTC 3 cut(s) 266, 534, 563
PspN4I GGNNCC 2 cut(s) 483, 489
PspPI GGNCC 1 cut(s) 253
PsuI RGATCY 1 cut(s) 443
RruI TCGCGA 1 cut(s) 263
SaqAI TTAA 2 cut(s) 228, 321
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 7 cut(s) 127, 245, 296, 312, 352, 443, 531
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 3 cut(s) 267, 535, 564
ScrFI CCNGG 1 cut(s) 499
SduI GDGCHC 1 cut(s) 124
SetI ASST 5 cut(s) 97, 149, 377, 540, 601
Sfr274I CTCGAG 1 cut(s) 552
SlaI CTCGAG 1 cut(s) 552
SmlI CTYRAG 1 cut(s) 552
SmoI CTYRAG 1 cut(s) 552
Sse9I AATT 3 cut(s) 390, 464, 517
SsiI CCGC 4 cut(s) 48, 60, 156, 452
StyD4I CCNGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 582
TaiI ACGT 2 cut(s) 97, 377
TaqI TCGA 3 cut(s) 299, 553, 560
TasI AATT 3 cut(s) 390, 464, 517
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 2 cut(s) 329, 341
Tru1I TTAA 2 cut(s) 228, 321
Tru9I TTAA 2 cut(s) 228, 321
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 1 cut(s) 436
XapI RAATTY 3 cut(s) 390, 464, 517
XhoI CTCGAG 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.