Prupe.5G034500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015969
Physical Location & Seq
Forward (+)
3936487 .. 3937899
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G034500.1

Sequence Viewer

Length: 708 bp
ATGGCGGCGGCTTACGTGGACGAAGAGGAGGTGTGGAAATGTCCAAAACACCCCTCCAAGCGCCGCAAAAGCGGAATCTGCCCCGTCTGCCTCCGCGAGCGCCTCGTCATCCTCTGCCCCGAATGCGCTAACGTGCGCCCCTGCGGATGCTGCGCTACGGCGACGACGTCGTCTTCTTCCTCGTCGTCGTCCTCTTCCCGGTTTACCGGCGGCGACGGCGTCCGCGTCGCGAAGCTTCTCGAGAGCGAGCCGTCATTCCGGCGGTCCCGATCGGTGGCGATCCCCTTTCTGCGTTCGAGGTCGAGGTTCGTCGGCGGCGGCGGCGTCGGCCATGTGGATTTCGACCGGAGCGAGCCGCATAGCGGCGGCGGTCGGGCGAAAACGCCGTCGTTTTGGTCGTCGATGTTTCGGTCATCTCAGAGGAGCAAGAGAAGCGAGGCAAATGGAGAACACGAAACGACACCGGAGAAGAAAGTAGTGGGAGAAATAGAGGAAGTAGAAGACGCAGATGCTGCGATGAGGAGGAATATGATGAGGAAATCGAGGTCGGTGGCCGTACCGATGATGTCGTCGAATTCCGGCGCTGCCACAGGAGAGAGACCGCCGGCGAAGGGTAGGGGCTGGTATTTTCCGAGTCCGATCAAGGCCTTCCGGCATTCCAAAATTTCGAAGATTGTTTCCGAGCGGTCGCCTGTGTACAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

236

Amino Acids

25.69

Weight (kDa)

10.0

Isoelectric Point (pI)

85.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
AatII GACGTC 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 685
AccII CGCG 3 cut(s) 96, 225, 230
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 2 cut(s) 328, 552
AcsI RAATTY 2 cut(s) 574, 663
AcyI GRCGYC 3 cut(s) 167, 219, 324
AfaI GTAC 2 cut(s) 558, 698
AfiI CCNNNNNNNGG 4 cut(s) 198, 274, 362, 611
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw26I GTCTC 1 cut(s) 592
AlwI GGATC 1 cut(s) 274
AlwNI CAGNNNCTG 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 3 cut(s) 328, 552, 645
ApeKI GCWGC 3 cut(s) 150, 512, 584
ApoI RAATTY 2 cut(s) 574, 663
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
AspLEI GCGC 6 cut(s) 63, 102, 128, 138, 155, 584
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 668
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 264
BbsI GAAGAC 2 cut(s) 165, 507
BbvI GCAGC 3 cut(s) 137, 499, 571
BceAI ACGGC 5 cut(s) 174, 232, 235, 370, 539
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 592
BfoI RGCGCY 3 cut(s) 64, 103, 585
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 137, 499
BpiI GAAGAC 2 cut(s) 165, 507
Bpu14I TTCGAA 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 16
BsaHI GRCGYC 3 cut(s) 167, 219, 324
BsaI GGTCTC 1 cut(s) 592
BsaWI WCCGGW 2 cut(s) 345, 463
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 274, 362, 611
Bse118I RCCGGY 2 cut(s) 206, 604
BseGI GGATG 2 cut(s) 108, 152
BseLI CCNNNNNNNGG 4 cut(s) 198, 274, 362, 611
BseMII CTCAG 1 cut(s) 431
BseRI GAGGAG 3 cut(s) 41, 436, 535
BseXI GCAGC 3 cut(s) 137, 499, 571
Bsh1236I CGCG 3 cut(s) 96, 225, 230
Bsh1285I CGRYCG 4 cut(s) 272, 346, 373, 689
BshFI GGCC 3 cut(s) 330, 554, 647
BsiEI CGRYCG 4 cut(s) 272, 346, 373, 689
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 8 cut(s) 199, 207, 259, 346, 464, 579, 605, 652
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 4 cut(s) 198, 274, 362, 611
BsmAI GTCTC 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 250
BsmI GAATGC 2 cut(s) 128, 655
BsnI GGCC 3 cut(s) 330, 554, 647
Bso31I GGTCTC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 668
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 3 cut(s) 269, 279, 639
Bsp68I TCGCGA 1 cut(s) 230
BspANI GGCC 3 cut(s) 330, 554, 647
BspCNI CTCAG 1 cut(s) 430
BspFNI CGCG 3 cut(s) 96, 225, 230
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 592
BsrBI CCGCTC 1 cut(s) 685
BsrFI RCCGGY 2 cut(s) 206, 604
BsrGI TGTACA 1 cut(s) 696
BssAI RCCGGY 2 cut(s) 206, 604
BssMI GATC 3 cut(s) 269, 279, 639
BssNI GRCGYC 3 cut(s) 167, 219, 324
Bst6I CTCTTC 2 cut(s) 18, 199
BstACI GRCGYC 3 cut(s) 167, 219, 324
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 696
BstBAI YACGTR 1 cut(s) 16
BstBI TTCGAA 1 cut(s) 668
BstC8I GCNNGC 4 cut(s) 98, 248, 353, 606
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 108, 152
BstFNI CGCG 3 cut(s) 96, 225, 230
BstH2I RGCGCY 3 cut(s) 64, 103, 585
BstHHI GCGC 6 cut(s) 63, 102, 128, 138, 155, 584
BstKTI GATC 3 cut(s) 272, 282, 642
BstMAI GTCTC 1 cut(s) 592
BstMBI GATC 3 cut(s) 269, 279, 639
BstMCI CGRYCG 4 cut(s) 272, 346, 373, 689
BstSCI CCNGG 1 cut(s) 197
BstUI CGCG 3 cut(s) 96, 225, 230
BstV1I GCAGC 3 cut(s) 137, 499, 571
BstV2I GAAGAC 2 cut(s) 165, 507
BsuRI GGCC 3 cut(s) 330, 554, 647
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 2 cut(s) 108, 152
BtuMI TCGCGA 1 cut(s) 230
Cac8I GCNNGC 4 cut(s) 98, 248, 353, 606
CaiI CAGNNNCTG 1 cut(s) 512
CfoI GCGC 6 cut(s) 63, 102, 128, 138, 155, 584
Cfr10I RCCGGY 2 cut(s) 206, 604
Cfr13I GGNCC 1 cut(s) 264
CseI GACGC 4 cut(s) 208, 214, 313, 512
Csp6I GTAC 2 cut(s) 557, 697
CviAII CATG 1 cut(s) 332
CviJI RGCY 8 cut(s) 11, 235, 250, 330, 355, 554, 621, 647
CviKI_1 RGCY 8 cut(s) 11, 235, 250, 330, 355, 554, 621, 647
CviQI GTAC 2 cut(s) 557, 697
DdeI CTNAG 1 cut(s) 417
DpnI GATC 3 cut(s) 271, 281, 641
DpnII GATC 3 cut(s) 269, 279, 639
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
EaeI YGGCCR 2 cut(s) 328, 552
Eam1104I CTCTTC 2 cut(s) 18, 199
EarI CTCTTC 2 cut(s) 18, 199
Eco147I AGGCCT 1 cut(s) 647
Eco31I GGTCTC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 574
FaeI CATG 1 cut(s) 335
FaiI YATR 3 cut(s) 333, 360, 530
FaqI GGGAC 1 cut(s) 250
FatI CATG 1 cut(s) 331
FokI GGATG 2 cut(s) 95, 159
GlaI GCGC 6 cut(s) 62, 101, 127, 137, 154, 583
HaeII RGCGCY 3 cut(s) 64, 103, 585
HaeIII GGCC 3 cut(s) 330, 554, 647
HapII CCGG 8 cut(s) 199, 207, 259, 346, 464, 579, 605, 652
HgaI GACGC 4 cut(s) 208, 214, 313, 512
HhaI GCGC 6 cut(s) 63, 102, 128, 138, 155, 584
Hin1I GRCGYC 3 cut(s) 167, 219, 324
Hin1II CATG 1 cut(s) 335
Hin6I GCGC 6 cut(s) 61, 100, 126, 136, 153, 582
HinP1I GCGC 6 cut(s) 61, 100, 126, 136, 153, 582
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 2 cut(s) 75, 634
HpaII CCGG 8 cut(s) 199, 207, 259, 346, 464, 579, 605, 652
Hpy166II GTNNAC 3 cut(s) 19, 204, 697
Hpy188I TCNGA 4 cut(s) 420, 633, 639, 682
Hpy188III TCNNGA 4 cut(s) 229, 239, 241, 267
Hpy8I GTNNAC 3 cut(s) 19, 204, 697
HpyAV CCTTC 2 cut(s) 604, 658
HpyCH4IV ACGT 3 cut(s) 15, 132, 167
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 3 cut(s) 15, 132, 167
Hsp92I GRCGYC 3 cut(s) 167, 219, 324
Hsp92II CATG 1 cut(s) 335
HspAI GCGC 6 cut(s) 61, 100, 126, 136, 153, 582
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Kzo9I GATC 3 cut(s) 269, 279, 639
LmnI GCTCC 2 cut(s) 348, 423
Lsp1109I GCAGC 3 cut(s) 137, 499, 571
LweI GCATC 2 cut(s) 137, 499
MaeII ACGT 3 cut(s) 15, 132, 167
MalI GATC 3 cut(s) 271, 281, 641
MbiI CCGCTC 1 cut(s) 685
MboI GATC 3 cut(s) 269, 279, 639
MboII GAAGA 7 cut(s) 35, 165, 168, 186, 481, 512, 682
MluCI AATT 2 cut(s) 574, 663
MlyI GAGTC 1 cut(s) 643
MreI CGCCGGCG 1 cut(s) 604
MroNI GCCGGC 1 cut(s) 604
MseI TTAA 1 cut(s) 706
MspI CCGG 8 cut(s) 199, 207, 259, 346, 464, 579, 605, 652
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 2 cut(s) 128, 655
MvnI CGCG 3 cut(s) 96, 225, 230
NaeI GCCGGC 1 cut(s) 606
NciI CCSGG 1 cut(s) 199
NdeII GATC 3 cut(s) 269, 279, 639
NgoMIV GCCGGC 1 cut(s) 604
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 266
NruI TCGCGA 1 cut(s) 230
NspV TTCGAA 1 cut(s) 668
PaeR7I CTCGAG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 647
PcsI WCGNNNNNNNCGW 4 cut(s) 164, 222, 348, 395
PctI GAATGC 2 cut(s) 128, 655
PdiI GCCGGC 1 cut(s) 606
PfeI GAWTC 1 cut(s) 75
PflFI GACNNNGTC 3 cut(s) 166, 169, 218
Ple19I CGATCG 1 cut(s) 272
PleI GAGTC 1 cut(s) 642
PpsI GAGTC 1 cut(s) 642
Ppu21I YACGTR 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 512
PsyI GACNNNGTC 3 cut(s) 166, 169, 218
PvuI CGATCG 1 cut(s) 272
RruI TCGCGA 1 cut(s) 230
RsaI GTAC 2 cut(s) 558, 698
RsaNI GTAC 2 cut(s) 557, 697
SaqAI TTAA 1 cut(s) 706
Sau3AI GATC 3 cut(s) 269, 279, 639
Sau96I GGNCC 1 cut(s) 264
SchI GAGTC 1 cut(s) 643
ScrFI CCNGG 1 cut(s) 199
SetI ASST 9 cut(s) 18, 33, 135, 170, 237, 302, 308, 548, 706
SfaNI GCATC 2 cut(s) 137, 499
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 668
SgrAI CRCCGGYG 1 cut(s) 604
SinI GGWCC 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 2 cut(s) 574, 663
SseBI AGGCCT 1 cut(s) 647
StuI AGGCCT 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 197
TaiI ACGT 3 cut(s) 18, 135, 170
TaqI TCGA 8 cut(s) 240, 296, 302, 342, 401, 542, 572, 668
TaqII GACCGA 1 cut(s) 399
TasI AATT 2 cut(s) 574, 663
TatI WGTACW 1 cut(s) 696
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 706
Tru9I TTAA 1 cut(s) 706
TseI GCWGC 3 cut(s) 150, 512, 584
Tth111I GACNNNGTC 3 cut(s) 166, 169, 218
VpaK11BI GGWCC 1 cut(s) 264
XapI RAATTY 2 cut(s) 574, 663
XhoI CTCGAG 1 cut(s) 239
ZraI GACGTC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.