FvH4_5g22200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015969
Physical Location & Seq
Reverse (-)
13538191 .. 13538859
669 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22200.t1

Sequence Viewer

Length: 669 bp
ATGGCGGCGGTCTACGTCGACGAAGAGGAAGTCTGGAAATGTCCGAAACACCCCTCCAAGCGCCGGAAGAGCGGCATCTGCCACATTTGCCTCCGCGAGCGCCTCGCCGCGCTCTGCCCCGACTGCGCTAACGTCCGCCCTTGCCCCTGCTGCGCCACCACCTCCGACTCTTCCTCTTCCTCCTCCGACGGCGTCCGCGTCGCCAAGATTCTCGAGAGCGAGCCCTCTTTCCGCCGATCCCGCTCCGTCGCCATTCCTTCTTTCCTCCGCTCCAGCTCCCGCTACGTCGGCAGCGGCGGCCGCCGCATCGACCTCACTGTTCCCGCCGACCGGCCGCCGAAGACGCCGTCTTTCTGGTCGTCCGTGTTCCGCTCGTCGCGGAGGAGCCAGCCCGGCGAGTTCAGCGTGCAACCAGAGCCGGCGCCGCCGATGAAGAAGTTCGGCGAGATTGAAGAGGTGGAAGAAGAAAACGACGAGGCGGCGATAAGGAGGACGATGATGATGAGGTCGAGGTCGGTGGCAGTACCGATGGTGTCGACCAATTCCGGTTCTTCCGGGAAGCCGCCGGTGAAGGGGAGAGGATGGCATTTTCCGAGTCCGATCAAGGCCTTCCGGCATACCAAAATCTCTAAGATCGGTTCCGAACGGTCGCCTGTGTACAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

223

Amino Acids

24.57

Weight (kDa)

9.87

Isoelectric Point (pI)

91.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 421
AccBSI CCGCTC 4 cut(s) 72, 243, 270, 372
AccI GTMKAC 3 cut(s) 12, 18, 536
AccII CGCG 4 cut(s) 96, 110, 198, 379
AclWI GGATC 1 cut(s) 231
AcoI YGGCCR 2 cut(s) 298, 332
AcyI GRCGYC 3 cut(s) 192, 344, 422
AfaI GTAC 2 cut(s) 525, 659
AfiI CCNNNNNNNGG 3 cut(s) 63, 330, 572
AgsI TTSAA 1 cut(s) 452
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
AlwI GGATC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 212
AoxI GGCC 3 cut(s) 298, 332, 606
ApeKI GCWGC 2 cut(s) 150, 291
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 332, 364
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 6 cut(s) 63, 102, 112, 128, 155, 424
AsuC2I CCSGG 2 cut(s) 393, 556
AsuHPI GGTGA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 212
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 347
BbvI GCAGC 2 cut(s) 137, 303
BccI CCATC 2 cut(s) 523, 576
BceAI ACGGC 2 cut(s) 205, 331
BcnI CCSGG 2 cut(s) 393, 556
BfoI RGCGCY 3 cut(s) 64, 103, 425
BglI GCCNNNNNGGC 1 cut(s) 393
Bme1390I CCNGG 2 cut(s) 393, 556
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 3 cut(s) 386, 423, 640
BmrFI CCNGG 2 cut(s) 393, 556
BmsI GCATC 2 cut(s) 84, 315
BpiI GAAGAC 1 cut(s) 347
BpmI CTGGAG 1 cut(s) 256
BpuMI CCSGG 2 cut(s) 393, 556
BsaHI GRCGYC 3 cut(s) 192, 344, 422
BsaWI WCCGGW 1 cut(s) 545
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 330, 572
Bse118I RCCGGY 3 cut(s) 330, 418, 565
BseGI GGATG 1 cut(s) 587
BseLI CCNNNNNNNGG 3 cut(s) 63, 330, 572
BseRI GAGGAG 2 cut(s) 172, 397
BseX3I CGGCCG 2 cut(s) 298, 332
BseXI GCAGC 2 cut(s) 137, 303
Bsh1236I CGCG 4 cut(s) 96, 110, 198, 379
Bsh1285I CGRYCG 4 cut(s) 301, 331, 335, 650
BshFI GGCC 3 cut(s) 300, 334, 608
BshNI GGYRCC 1 cut(s) 421
BsiEI CGRYCG 4 cut(s) 301, 331, 335, 650
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 8 cut(s) 64, 331, 393, 419, 546, 555, 566, 613
BslI CCNNNNNNNGG 3 cut(s) 63, 330, 572
BsnI GGCC 3 cut(s) 300, 334, 608
BsoBI CYCGRG 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 225
Bsp1407I TGTACA 1 cut(s) 657
Bsp143I GATC 3 cut(s) 236, 600, 633
BspANI GGCC 3 cut(s) 300, 334, 608
BspFNI CGCG 4 cut(s) 96, 110, 198, 379
BspLI GGNNCC 3 cut(s) 386, 423, 640
BspPI GGATC 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 421
BsrBI CCGCTC 4 cut(s) 72, 243, 270, 372
BsrFI RCCGGY 3 cut(s) 330, 418, 565
BsrGI TGTACA 1 cut(s) 657
BssAI RCCGGY 3 cut(s) 330, 418, 565
BssMI GATC 3 cut(s) 236, 600, 633
BssNI GRCGYC 3 cut(s) 192, 344, 422
Bst4CI ACNGT 2 cut(s) 319, 648
Bst6I CTCTTC 5 cut(s) 18, 62, 175, 181, 447
BstACI GRCGYC 3 cut(s) 192, 344, 422
BstAUI TGTACA 1 cut(s) 657
BstC8I GCNNGC 5 cut(s) 98, 221, 389, 407, 420
BstDEI CTNAG 1 cut(s) 630
BstF5I GGATG 1 cut(s) 587
BstFNI CGCG 4 cut(s) 96, 110, 198, 379
BstH2I RGCGCY 3 cut(s) 64, 103, 425
BstHHI GCGC 6 cut(s) 63, 102, 112, 128, 155, 424
BstKTI GATC 3 cut(s) 239, 603, 636
BstMBI GATC 3 cut(s) 236, 600, 633
BstMCI CGRYCG 4 cut(s) 301, 331, 335, 650
BstSCI CCNGG 2 cut(s) 391, 554
BstUI CGCG 4 cut(s) 96, 110, 198, 379
BstV1I GCAGC 2 cut(s) 137, 303
BstV2I GAAGAC 1 cut(s) 347
BstZI CGGCCG 2 cut(s) 298, 332
BsuRI GGCC 3 cut(s) 300, 334, 608
BtsCI GGATG 1 cut(s) 587
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 5 cut(s) 98, 221, 389, 407, 420
CciNI GCGGCCGC 1 cut(s) 298
CfoI GCGC 6 cut(s) 63, 102, 112, 128, 155, 424
Cfr10I RCCGGY 3 cut(s) 330, 418, 565
CseI GACGC 3 cut(s) 181, 187, 352
Csp6I GTAC 2 cut(s) 524, 658
CviJI RGCY 9 cut(s) 223, 276, 300, 334, 387, 391, 418, 562, 608
CviKI_1 RGCY 9 cut(s) 223, 276, 300, 334, 387, 391, 418, 562, 608
CviQI GTAC 2 cut(s) 524, 658
DdeI CTNAG 1 cut(s) 630
DinI GGCGCC 1 cut(s) 423
DpnI GATC 3 cut(s) 238, 602, 635
DpnII GATC 3 cut(s) 236, 600, 633
EaeI YGGCCR 2 cut(s) 298, 332
EagI CGGCCG 2 cut(s) 298, 332
Eam1104I CTCTTC 5 cut(s) 18, 62, 175, 181, 447
EarI CTCTTC 5 cut(s) 18, 62, 175, 181, 447
EciI GGCGGA 2 cut(s) 125, 221
EclXI CGGCCG 2 cut(s) 298, 332
Eco147I AGGCCT 1 cut(s) 608
Eco24I GRGCYC 1 cut(s) 225
Eco52I CGGCCG 2 cut(s) 298, 332
Eco88I CYCGRG 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 225
EgeI GGCGCC 1 cut(s) 423
EheI GGCGCC 1 cut(s) 423
FaiI YATR 1 cut(s) 618
FauI CCCGC 3 cut(s) 248, 287, 331
FblI GTMKAC 3 cut(s) 12, 18, 536
FokI GGATG 1 cut(s) 594
FriOI GRGCYC 1 cut(s) 225
GlaI GCGC 6 cut(s) 62, 101, 111, 127, 154, 423
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 3 cut(s) 64, 103, 425
HaeIII GGCC 3 cut(s) 300, 334, 608
HapII CCGG 8 cut(s) 64, 331, 393, 419, 546, 555, 566, 613
HgaI GACGC 3 cut(s) 181, 187, 352
HhaI GCGC 6 cut(s) 63, 102, 112, 128, 155, 424
Hin1I GRCGYC 3 cut(s) 192, 344, 422
Hin6I GCGC 6 cut(s) 61, 100, 110, 126, 153, 422
HinP1I GCGC 6 cut(s) 61, 100, 110, 126, 153, 422
HincII GTYRAC 2 cut(s) 19, 537
HindII GTYRAC 2 cut(s) 19, 537
HinfI GANTC 3 cut(s) 167, 208, 595
HpaII CCGG 8 cut(s) 64, 331, 393, 419, 546, 555, 566, 613
HphI GGTGA 1 cut(s) 580
Hpy166II GTNNAC 4 cut(s) 13, 19, 537, 658
Hpy188I TCNGA 6 cut(s) 45, 166, 187, 594, 600, 643
Hpy188III TCNNGA 3 cut(s) 34, 212, 214
Hpy8I GTNNAC 4 cut(s) 13, 19, 537, 658
Hpy99I CGWCG 8 cut(s) 20, 23, 191, 203, 251, 290, 379, 476
HpyAV CCTTC 3 cut(s) 267, 565, 619
HpyCH4III ACNGT 2 cut(s) 319, 648
HpyCH4IV ACGT 3 cut(s) 15, 132, 285
HpyCH4V TGCA 1 cut(s) 409
HpyF3I CTNAG 1 cut(s) 630
HpySE526I ACGT 3 cut(s) 15, 132, 285
Hsp92I GRCGYC 3 cut(s) 192, 344, 422
HspAI GCGC 6 cut(s) 61, 100, 110, 126, 153, 422
KasI GGCGCC 1 cut(s) 421
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
Kzo9I GATC 3 cut(s) 236, 600, 633
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 4 cut(s) 248, 275, 281, 384
Lsp1109I GCAGC 2 cut(s) 137, 303
LweI GCATC 2 cut(s) 84, 315
MaeII ACGT 3 cut(s) 15, 132, 285
MalI GATC 3 cut(s) 238, 602, 635
MbiI CCGCTC 4 cut(s) 72, 243, 270, 372
MboI GATC 3 cut(s) 236, 600, 633
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 541
Mly113I GGCGCC 1 cut(s) 422
MlyI GAGTC 2 cut(s) 161, 604
MmeI TCCRAC 2 cut(s) 189, 210
MroNI GCCGGC 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 667
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 8 cut(s) 64, 331, 393, 419, 546, 555, 566, 613
MspR9I CCNGG 2 cut(s) 393, 556
MvnI CGCG 4 cut(s) 96, 110, 198, 379
NaeI GCCGGC 1 cut(s) 420
NarI GGCGCC 1 cut(s) 422
NciI CCSGG 2 cut(s) 393, 556
NdeII GATC 3 cut(s) 236, 600, 633
NgoMIV GCCGGC 1 cut(s) 418
NlaIV GGNNCC 3 cut(s) 386, 423, 640
NotI GCGGCCGC 1 cut(s) 298
PaeR7I CTCGAG 1 cut(s) 212
PceI AGGCCT 1 cut(s) 608
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 208
PflFI GACNNNGTC 2 cut(s) 191, 346
PfoI TCCNGGA 1 cut(s) 554
PleI GAGTC 2 cut(s) 161, 603
PluTI GGCGCC 1 cut(s) 425
PpsI GAGTC 2 cut(s) 161, 603
PspN4I GGNNCC 3 cut(s) 386, 423, 640
PsyI GACNNNGTC 2 cut(s) 191, 346
RsaI GTAC 2 cut(s) 525, 659
RsaNI GTAC 2 cut(s) 524, 658
SalI GTCGAC 2 cut(s) 17, 535
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 667
Sau3AI GATC 3 cut(s) 236, 600, 633
SchI GAGTC 2 cut(s) 161, 604
ScrFI CCNGG 2 cut(s) 393, 556
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 2 cut(s) 84, 315
SfoI GGCGCC 1 cut(s) 423
Sfr274I CTCGAG 1 cut(s) 212
SgrAI CRCCGGYG 1 cut(s) 565
SgrDI CGTCGACG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 541
SseBI AGGCCT 1 cut(s) 608
SspDI GGCGCC 1 cut(s) 421
StuI AGGCCT 1 cut(s) 608
StyD4I CCNGG 2 cut(s) 391, 554
TaaI ACNGT 2 cut(s) 319, 648
TaiI ACGT 3 cut(s) 18, 135, 288
TaqI TCGA 5 cut(s) 18, 213, 309, 509, 536
TasI AATT 1 cut(s) 541
TatI WGTACW 1 cut(s) 657
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 667
Tru9I TTAA 1 cut(s) 667
TscAI CASTG 1 cut(s) 322
TseI GCWGC 2 cut(s) 150, 291
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 2 cut(s) 235, 352
TspRI CASTG 1 cut(s) 322
Tth111I GACNNNGTC 2 cut(s) 191, 346
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 3 cut(s) 12, 18, 536
XmnI GAANNNNTTC 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.