Rorug07G0116800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0015969
Physical Location & Seq
Reverse (-)
9084665 .. 9086196
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0116800.1

Sequence Viewer

Length: 987 bp
ATGGCAAGAGAGGTTTTGAAAACTCATGACCTAGGTTTTTCAGGTAGACCAGCCTTGTATGTTGCAAAGAAGCTTAGCTATGGATGTGTCAATCTATCGTTTGCTCCTTATGGTGAGTATTGGAGGGAGGTAAGGAAGATAGTGATCTTGGAACTACTTGGTCCAAAGAGGGTCCAAATGTTTCAGTCTGTGAGGGATGAAGAGGTTGGAGTTATGATCGACTCAATAGCTCATAAGTGTAAGGGTATTGTCAATCTCAGTGAAGTGACAGTTACCTTGGCCAACAATGTTTTGTGTCGCTGCGCTTTTGGTAAGAAGTATGATGAAGGTGAAATTGGCATGAGCAGAATTCATGAGTTGCTTAAAAAGTCGATGGACATGTTTTTAGCAGGAACTGATACCACCTCAGCCATACTGGTATGGACAATGACTGAGCTTATGCGGAACCCTCTGGTGTTGAAGAAAGCACAAAATGAGGTGAGAGGAGTGGTAAAGGGAAAAGCGAAGGTGGAAGAAAGTGATCTTTCTCAACTAATGTACCTAATTAGTCATCAAAGAAAGTTTAAGAGTACATCCACCTACACTGCTATTCCAAGAGAAACCTCCGAGACTAGCACAATTGAAGGGTTTGTAATTCCAGCCAAAACAATGGTGTTTGTCCTTGCAAAAATGATAGGAAGAGACCCTAAATGTTGGGAGAATCCAAACGAGTTCTTTCCTGGAAGATTCGTAGACAGCAGGATTGATTACAAAGGAAAGAATTATGAGCCTTTACCATTTGGGGCAGGAAGGAGGGGTTGTCCTGGTATGAACTTCGGTGTACAGGTAGTTGAGCTTGCACTCGCCAATTTGCTTTATTGTTTTGAATGGGAACTGCCTGATGGGGTAAGAGGAGATGACTTGGACATGAAGGAAGCTGCTGGCCTTGCAATGCAGAAGAAAGTTCCTCTATGTTTAGCTGCTAGAGCAGCACTGCTAGTAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

328

Amino Acids

36.71

Weight (kDa)

8.88

Isoelectric Point (pI)

24.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 108 2.1e-07 Cytochrome P450
p450 PF00067 117 - 314 4.5e-47 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 46, 732
AciI CCGC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 348
AfaI GTAC 3 cut(s) 539, 571, 822
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 4 cut(s) 19, 460, 623, 866
AjnI CCWGG 2 cut(s) 718, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 8 cut(s) 73, 78, 230, 436, 835, 917, 959, 984
AluI AGCT 8 cut(s) 73, 78, 230, 436, 835, 917, 959, 984
Alw26I GTCTC 2 cut(s) 602, 675
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 2 cut(s) 279, 922
ApeKI GCWGC 4 cut(s) 300, 917, 959, 968
ApoI RAATTY 1 cut(s) 348
AspA2I CCTAGG 1 cut(s) 31
AspLEI GCGC 1 cut(s) 305
AspS9I GGNCC 2 cut(s) 161, 172
AsuHPI GGTGA 3 cut(s) 125, 341, 490
AvaII GGWCC 2 cut(s) 161, 172
AvrII CCTAGG 1 cut(s) 31
BaeI ACNNNNGTAYC 2 cut(s) 521, 554
BalI TGGCCA 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 406
BbvI GCAGC 4 cut(s) 287, 904, 946, 980
BccI CCATC 2 cut(s) 367, 875
BciT130I CCWGG 2 cut(s) 720, 804
BcoDI GTCTC 2 cut(s) 602, 675
BfaI CTAG 4 cut(s) 32, 612, 963, 977
BisI GCNGC 4 cut(s) 301, 918, 960, 969
BlnI CCTAGG 1 cut(s) 31
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 4 cut(s) 302, 919, 961, 970
Bme1390I CCNGG 2 cut(s) 720, 804
Bme18I GGWCC 2 cut(s) 161, 172
BmgT120I GGNCC 2 cut(s) 161, 172
BmiI GGNNCC 2 cut(s) 173, 446
BmrFI CCNGG 2 cut(s) 720, 804
Bpu10I CCTNAGC 1 cut(s) 406
Bpu1102I GCTNAGC 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 31, 276
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bse1I ACTGG 1 cut(s) 420
Bse3DI GCAATG 1 cut(s) 936
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 720, 804
BseDI CCNNGG 2 cut(s) 31, 276
BseGI GGATG 3 cut(s) 89, 202, 572
BseJI GATNNNNATC 1 cut(s) 143
BseMI GCAATG 1 cut(s) 936
BseMII CTCAG 3 cut(s) 271, 420, 423
BseNI ACTGG 1 cut(s) 420
BseRI GAGGAG 2 cut(s) 498, 906
BseXI GCAGC 4 cut(s) 287, 904, 946, 980
BshFI GGCC 2 cut(s) 281, 924
BsmAI GTCTC 2 cut(s) 602, 675
BsnI GGCC 2 cut(s) 281, 924
Bso31I GGTCTC 1 cut(s) 675
Bsp1407I TGTACA 1 cut(s) 820
Bsp143I GATC 3 cut(s) 144, 216, 520
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 1 cut(s) 442
BspANI GGCC 2 cut(s) 281, 924
BspCNI CTCAG 3 cut(s) 270, 419, 424
BspHI TCATGA 2 cut(s) 25, 352
BspLI GGNNCC 2 cut(s) 173, 446
BspTNI GGTCTC 1 cut(s) 675
BsrDI GCAATG 1 cut(s) 936
BsrGI TGTACA 1 cut(s) 820
BsrI ACTGG 1 cut(s) 420
BssECI CCNNGG 2 cut(s) 31, 276
BssMI GATC 3 cut(s) 144, 216, 520
BssT1I CCWWGG 2 cut(s) 31, 276
Bst2UI CCWGG 2 cut(s) 720, 804
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 195, 673
BstAUI TGTACA 1 cut(s) 820
BstC8I GCNNGC 2 cut(s) 837, 922
BstDEI CTNAG 4 cut(s) 74, 257, 406, 432
BstF5I GGATG 3 cut(s) 89, 202, 572
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 3 cut(s) 147, 219, 523
BstMAI GTCTC 2 cut(s) 602, 675
BstMBI GATC 3 cut(s) 144, 216, 520
BstMWI GCNNNNNNNGC 3 cut(s) 926, 965, 968
BstNI CCWGG 2 cut(s) 720, 804
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 718, 802
BstV1I GCAGC 4 cut(s) 287, 904, 946, 980
BstXI CCANNNNNNTGG 1 cut(s) 649
BsuRI GGCC 2 cut(s) 281, 924
BtsCI GGATG 3 cut(s) 89, 202, 572
BtsI GCAGTG 2 cut(s) 582, 971
BtsIMutI CAGTG 3 cut(s) 265, 582, 971
Cac8I GCNNGC 2 cut(s) 837, 922
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 2 cut(s) 25, 352
CfoI GCGC 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 161, 172
Csp6I GTAC 3 cut(s) 538, 570, 821
CviAII CATG 5 cut(s) 26, 340, 353, 379, 907
CviQI GTAC 3 cut(s) 538, 570, 821
DdeI CTNAG 4 cut(s) 74, 257, 406, 432
DpnI GATC 3 cut(s) 146, 218, 522
DpnII GATC 3 cut(s) 144, 216, 520
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 195, 673
EarI CTCTTC 2 cut(s) 195, 673
Eco130I CCWWGG 2 cut(s) 31, 276
Eco31I GGTCTC 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 161, 172
EcoRI GAATTC 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 718, 802
EcoT14I CCWWGG 2 cut(s) 31, 276
ErhI CCWWGG 2 cut(s) 31, 276
FaeI CATG 5 cut(s) 29, 343, 356, 382, 910
FatI CATG 5 cut(s) 25, 339, 352, 378, 906
FblI GTMKAC 2 cut(s) 46, 732
Fnu4HI GCNGC 4 cut(s) 301, 918, 960, 969
FokI GGATG 3 cut(s) 96, 209, 559
Fsp4HI GCNGC 4 cut(s) 301, 918, 960, 969
FspBI CTAG 4 cut(s) 32, 612, 963, 977
GlaI GCGC 1 cut(s) 304
GluI GCNGC 4 cut(s) 301, 918, 960, 969
HaeIII GGCC 2 cut(s) 281, 924
HhaI GCGC 1 cut(s) 305
Hin1II CATG 5 cut(s) 29, 343, 356, 382, 910
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 3 cut(s) 221, 700, 726
HphI GGTGA 3 cut(s) 125, 341, 490
Hpy166II GTNNAC 3 cut(s) 47, 733, 821
Hpy188I TCNGA 1 cut(s) 607
Hpy188III TCNNGA 2 cut(s) 26, 353
Hpy8I GTNNAC 3 cut(s) 47, 733, 821
HpyAV CCTTC 5 cut(s) 320, 499, 617, 783, 904
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 5 cut(s) 65, 665, 839, 929, 934
HpyF10VI GCNNNNNNNGC 3 cut(s) 926, 965, 968
HpyF3I CTNAG 4 cut(s) 74, 257, 406, 432
Hsp92II CATG 5 cut(s) 29, 343, 356, 382, 910
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 3 cut(s) 144, 216, 520
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 4 cut(s) 287, 904, 946, 980
MaeI CTAG 4 cut(s) 32, 612, 963, 977
MaeIII GTNAC 2 cut(s) 265, 271
MalI GATC 3 cut(s) 146, 218, 522
MboI GATC 3 cut(s) 144, 216, 520
MboII GAAGA 7 cut(s) 148, 212, 472, 524, 690, 735, 949
MfeI CAATTG 1 cut(s) 618
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 7 cut(s) 333, 348, 543, 618, 633, 760, 847
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 187
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 2 cut(s) 363, 564
Msp20I TGGCCA 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 720, 804
MunI CAATTG 1 cut(s) 618
MvaI CCWGG 2 cut(s) 720, 804
MwoI GCNNNNNNNGC 3 cut(s) 926, 965, 968
NdeII GATC 3 cut(s) 144, 216, 520
NlaIII CATG 5 cut(s) 29, 343, 356, 382, 910
NlaIV GGNNCC 2 cut(s) 173, 446
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 382
PagI TCATGA 2 cut(s) 25, 352
PciI ACATGT 1 cut(s) 378
PfeI GAWTC 2 cut(s) 700, 726
PfoI TCCNGGA 1 cut(s) 718
PkrI GCNGC 4 cut(s) 302, 919, 961, 970
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
PscI ACATGT 1 cut(s) 378
Psp6I CCWGG 2 cut(s) 718, 802
PspGI CCWGG 2 cut(s) 718, 802
PspN4I GGNNCC 2 cut(s) 173, 446
PspPI GGNCC 2 cut(s) 161, 172
PstNI CAGNNNCTG 1 cut(s) 395
RsaI GTAC 3 cut(s) 539, 571, 822
RsaNI GTAC 3 cut(s) 538, 570, 821
SaqAI TTAA 2 cut(s) 363, 564
SatI GCNGC 4 cut(s) 301, 918, 960, 969
Sau3AI GATC 3 cut(s) 144, 216, 520
Sau96I GGNCC 2 cut(s) 161, 172
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 720, 804
SinI GGWCC 2 cut(s) 161, 172
Sse9I AATT 7 cut(s) 333, 348, 543, 618, 633, 760, 847
SsiI CCGC 1 cut(s) 442
SspMI CTAG 4 cut(s) 32, 612, 963, 977
StyD4I CCNGG 2 cut(s) 718, 802
StyI CCWWGG 2 cut(s) 31, 276
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 2 cut(s) 219, 371
TasI AATT 7 cut(s) 333, 348, 543, 618, 633, 760, 847
TatI WGTACW 2 cut(s) 569, 820
TfiI GAWTC 2 cut(s) 700, 726
Tru1I TTAA 2 cut(s) 363, 564
Tru9I TTAA 2 cut(s) 363, 564
TscAI CASTG 3 cut(s) 265, 589, 978
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 4 cut(s) 300, 917, 959, 968
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 5 cut(s) 213, 339, 341, 824, 923
TspRI CASTG 3 cut(s) 265, 589, 978
VpaK11BI GGWCC 2 cut(s) 161, 172
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 382
XmaJI CCTAGG 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 46, 732
XspI CTAG 4 cut(s) 32, 612, 963, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.