Rroxscaffold_3G00248870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015969
Physical Location & Seq
Forward (+)
42337711 .. 42338403
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00248870.1

Sequence Viewer

Length: 693 bp
ATGGCGGCGGTCTACGTCGACGAGGAGGAGGTCTGGAAATGTCTGAAACACCCCTCCAAGCGCCGGAAGAGCGGCATCTGCCACATTTGCCTCCGCGAGCGCCTCGCCGCTCTCTGCCCCGACTGCGCTAACGTGCGCCCCTGCCCCTGCTGCGCCACCTCCTCCGACTCTTCCTCCTCCTCCAACTCTTCCCGCTTCCCCGCTGACGGCGTCCGCGTCGCCAAGCTTCTCGAGAGCGAGCCCTCTTTCCGGCGATCCCGCTCCGTGGCGGTTCCCTCTTTCCTCCGCTCCAGCTCCCGCTACGTCGGAAGCGGCGGCCGCCGCTTCGACCTCACTACTTCCGGCGACCGGAGCGAGCGGCCGAAGACTCCTTCTTTTTGGTCGTCCGTGTTCCGCTCGTCGCGGAGGAGCCAGGCCAGCGAGTTCAGCGTACAACCCGAGCCGGCCCCGGCGGTGAAGAAGTTCGGTGAGATTGAAGAGGTGGAACAACAAGACGACGAGGCGTCGATGAGGAGGACGATGATGATGAGGTCGAGGTCGGTGGCGGTACCGATGGTGTCGACCAATTCCGGTTCCTCCGGTAAGCCGCCGTCGAAGGGTAGAGGATGGCATTTTCCGAGTCCGATCAAGGCCTTCCGGCATTCCAAAATCTCCAAGATTGGTTCTGAACGGTCGCCTGTGTACAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

230

Amino Acids

25.47

Weight (kDa)

10.04

Isoelectric Point (pI)

92.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 1 cut(s) 547
AccBSI CCGCTC 6 cut(s) 72, 110, 261, 288, 358, 396
AccI GTMKAC 3 cut(s) 12, 18, 560
AccII CGCG 3 cut(s) 96, 216, 403
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 2 cut(s) 316, 359
AcyI GRCGYC 2 cut(s) 210, 503
AfaI GTAC 3 cut(s) 432, 549, 683
AfiI CCNNNNNNNGG 6 cut(s) 63, 206, 249, 265, 348, 596
AgsI TTSAA 1 cut(s) 476
AhdI GACNNNNNGTC 1 cut(s) 502
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 2 cut(s) 226, 294
AluI AGCT 2 cut(s) 226, 294
AlwI GGATC 1 cut(s) 249
Ama87I CYCGRG 2 cut(s) 230, 437
AoxI GGCC 5 cut(s) 316, 359, 414, 444, 630
ApeKI GCWGC 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 461
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 5 cut(s) 63, 102, 128, 138, 155
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 466, 479
AvaI CYCGRG 2 cut(s) 230, 437
BanI GGYRCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 547, 600
BceAI ACGGC 2 cut(s) 223, 574
BciT130I CCWGG 1 cut(s) 413
BcnI CCSGG 1 cut(s) 449
BfoI RGCGCY 2 cut(s) 64, 103
Bme1390I CCNGG 2 cut(s) 413, 449
BmeRI GACNNNNNGTC 1 cut(s) 502
BmeT110I CYCGRG 2 cut(s) 230, 437
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 5 cut(s) 273, 410, 447, 549, 574
BmrFI CCNGG 2 cut(s) 413, 449
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 371
BpmI CTGGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 449
BsaHI GRCGYC 2 cut(s) 210, 503
BsaJI CCNNGG 2 cut(s) 264, 447
BsaWI WCCGGW 3 cut(s) 348, 569, 578
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 206, 249, 265, 348, 596
Bse118I RCCGGY 1 cut(s) 442
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 264, 447
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 6 cut(s) 63, 206, 249, 265, 348, 596
BseRI GAGGAG 7 cut(s) 38, 41, 151, 166, 169, 421, 526
BseX3I CGGCCG 2 cut(s) 316, 359
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 3 cut(s) 96, 216, 403
Bsh1285I CGRYCG 4 cut(s) 319, 349, 362, 674
BshFI GGCC 5 cut(s) 318, 361, 416, 446, 632
BshNI GGYRCC 1 cut(s) 547
BsiEI CGRYCG 4 cut(s) 319, 349, 362, 674
BsiHKCI CYCGRG 2 cut(s) 230, 437
BsiSI CCGG 9 cut(s) 64, 250, 342, 349, 443, 449, 570, 579, 637
BslI CCNNNNNNNGG 6 cut(s) 63, 206, 249, 265, 348, 596
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 5 cut(s) 318, 361, 416, 446, 632
BsoBI CYCGRG 2 cut(s) 230, 437
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 2 cut(s) 254, 624
BspANI GGCC 5 cut(s) 318, 361, 416, 446, 632
BspFNI CGCG 3 cut(s) 96, 216, 403
BspLI GGNNCC 5 cut(s) 273, 410, 447, 549, 574
BspPI GGATC 1 cut(s) 249
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 547
BsrBI CCGCTC 6 cut(s) 72, 110, 261, 288, 358, 396
BsrFI RCCGGY 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 2 cut(s) 264, 447
BssMI GATC 2 cut(s) 254, 624
BssNI GRCGYC 2 cut(s) 210, 503
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 4 cut(s) 62, 175, 193, 471
BstACI GRCGYC 2 cut(s) 210, 503
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 5 cut(s) 98, 239, 356, 418, 444
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 611
BstFNI CGCG 3 cut(s) 96, 216, 403
BstH2I RGCGCY 2 cut(s) 64, 103
BstHHI GCGC 5 cut(s) 63, 102, 128, 138, 155
BstKTI GATC 2 cut(s) 257, 627
BstMBI GATC 2 cut(s) 254, 624
BstMCI CGRYCG 4 cut(s) 319, 349, 362, 674
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 2 cut(s) 411, 447
BstUI CGCG 3 cut(s) 96, 216, 403
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 371
BstZI CGGCCG 2 cut(s) 316, 359
BsuRI GGCC 5 cut(s) 318, 361, 416, 446, 632
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 611
Cac8I GCNNGC 5 cut(s) 98, 239, 356, 418, 444
CciNI GCGGCCGC 1 cut(s) 316
CfoI GCGC 5 cut(s) 63, 102, 128, 138, 155
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 1 cut(s) 445
CseI GACGC 3 cut(s) 199, 205, 492
Csp6I GTAC 3 cut(s) 431, 548, 682
CviQI GTAC 3 cut(s) 431, 548, 682
DpnI GATC 2 cut(s) 256, 626
DpnII GATC 2 cut(s) 254, 624
DriI GACNNNNNGTC 1 cut(s) 502
EaeI YGGCCR 2 cut(s) 316, 359
EagI CGGCCG 2 cut(s) 316, 359
Eam1104I CTCTTC 4 cut(s) 62, 175, 193, 471
Eam1105I GACNNNNNGTC 1 cut(s) 502
EarI CTCTTC 4 cut(s) 62, 175, 193, 471
EclXI CGGCCG 2 cut(s) 316, 359
Eco147I AGGCCT 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 243
Eco52I CGGCCG 2 cut(s) 316, 359
Eco88I CYCGRG 2 cut(s) 230, 437
EcoRII CCWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 243
FauI CCCGC 4 cut(s) 200, 208, 266, 305
FblI GTMKAC 3 cut(s) 12, 18, 560
FokI GGATG 1 cut(s) 618
FriOI GRGCYC 1 cut(s) 243
GlaI GCGC 5 cut(s) 62, 101, 127, 137, 154
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 2 cut(s) 64, 103
HaeIII GGCC 5 cut(s) 318, 361, 416, 446, 632
HapII CCGG 9 cut(s) 64, 250, 342, 349, 443, 449, 570, 579, 637
HgaI GACGC 3 cut(s) 199, 205, 492
HhaI GCGC 5 cut(s) 63, 102, 128, 138, 155
Hin1I GRCGYC 2 cut(s) 210, 503
Hin6I GCGC 5 cut(s) 61, 100, 126, 136, 153
HinP1I GCGC 5 cut(s) 61, 100, 126, 136, 153
HincII GTYRAC 2 cut(s) 19, 561
HindII GTYRAC 2 cut(s) 19, 561
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 167, 367, 619
HpaII CCGG 9 cut(s) 64, 250, 342, 349, 443, 449, 570, 579, 637
HphI GGTGA 2 cut(s) 466, 479
Hpy166II GTNNAC 4 cut(s) 13, 19, 561, 682
Hpy188I TCNGA 6 cut(s) 45, 166, 308, 618, 624, 667
Hpy188III TCNNGA 3 cut(s) 34, 230, 232
Hpy8I GTNNAC 4 cut(s) 13, 19, 561, 682
Hpy99I CGWCG 8 cut(s) 20, 23, 221, 308, 403, 500, 508, 595
HpyAV CCTTC 3 cut(s) 381, 589, 643
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 3 cut(s) 15, 132, 303
HpySE526I ACGT 3 cut(s) 15, 132, 303
Hsp92I GRCGYC 2 cut(s) 210, 503
HspAI GCGC 5 cut(s) 61, 100, 126, 136, 153
KpnI GGTACC 1 cut(s) 551
KroI GCCGGC 1 cut(s) 442
KroNI GCCGGC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 254, 624
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 5 cut(s) 266, 293, 299, 351, 408
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 84
MaeII ACGT 3 cut(s) 15, 132, 303
MalI GATC 2 cut(s) 256, 626
MbiI CCGCTC 6 cut(s) 72, 110, 261, 288, 358, 396
MboI GATC 2 cut(s) 254, 624
MboII GAAGA 6 cut(s) 79, 162, 180, 376, 469, 488
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 1 cut(s) 565
MlyI GAGTC 3 cut(s) 161, 361, 628
MmeI TCCRAC 3 cut(s) 189, 207, 286
MroNI GCCGGC 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 461
MseI TTAA 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 9 cut(s) 64, 250, 342, 349, 443, 449, 570, 579, 637
MspR9I CCNGG 2 cut(s) 413, 449
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 3 cut(s) 96, 216, 403
NaeI GCCGGC 1 cut(s) 444
NciI CCSGG 1 cut(s) 449
NdeII GATC 2 cut(s) 254, 624
NgoMIV GCCGGC 1 cut(s) 442
NlaIV GGNNCC 5 cut(s) 273, 410, 447, 549, 574
NotI GCGGCCGC 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 230
PceI AGGCCT 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 640
PdiI GCCGGC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 461
PflFI GACNNNGTC 1 cut(s) 209
PleI GAGTC 3 cut(s) 161, 361, 627
PpsI GAGTC 3 cut(s) 161, 361, 627
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 5 cut(s) 273, 410, 447, 549, 574
PspPI GGNCC 1 cut(s) 445
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 3 cut(s) 432, 549, 683
RsaNI GTAC 3 cut(s) 431, 548, 682
SalI GTCGAC 2 cut(s) 17, 559
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 691
Sau3AI GATC 2 cut(s) 254, 624
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 3 cut(s) 161, 361, 628
ScrFI CCNGG 2 cut(s) 413, 449
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 230
SgrDI CGTCGACG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 565
SseBI AGGCCT 1 cut(s) 632
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 2 cut(s) 411, 447
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 3 cut(s) 18, 135, 306
TaqI TCGA 7 cut(s) 18, 231, 327, 506, 533, 560, 593
TasI AATT 1 cut(s) 565
TatI WGTACW 1 cut(s) 681
TauI GCSGC 9 cut(s) 8, 75, 110, 315, 318, 321, 324, 361, 589
Tru1I TTAA 1 cut(s) 691
Tru9I TTAA 1 cut(s) 691
TseI GCWGC 1 cut(s) 150
TspGWI ACGGA 2 cut(s) 253, 376
Tth111I GACNNNGTC 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 230
XmiI GTMKAC 3 cut(s) 12, 18, 560
XmnI GAANNNNTTC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.