Rh7BG245100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015969
Physical Location & Seq
Reverse (-)
21800938 .. 21811681
10744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG245100.1

Sequence Viewer

Length: 1074 bp
ATGGCGGCGGTCTACGTCGACGAGGAGGAGGTCTGGAAATGTCTGAAACACCCCTCCAAGCGCCGGAAGAGCGGCATCTGCCACATTTGCCTCCGCGAGCGCCTCGCCGCGCTCTGCCCCGACTGCGCTAACGTGCGCCCCTGCCCCTGCTGCGCCACCTCCTCCGACTCTTCCTCCTCCTCCAACTCTTCCCGCTTCCCCGCCGACGGCGTCCGCGTCGCCAAGCTTCTCGAGAGCGAGCCCTCTTTCAGGCGATCCCGCTCCGTGGCGATTCCCTCTTTCCTCCGCTCCAGCTCCCGCTACGTTGGAAGCGGCGGCCGCCGCTTCGACCTCACTACTTCCGGCGACCGGAGCGAGCGGCCGAAGACTCCTTCTTTTTGGTCGTCCGTGTTCCGCTCGTCGCGGAGGAGCCAGGCCAGCGAGTTCAGCGTACAACCCGAGCCGGCCCCGGCGGTGAAGAAGTTCGGCGAGATTGAAGAGGTGGAACAACAAGACGACGAGGCGGCTATGAGGAGGACGATGATGATGAGGTCGAGGTCGGTGGCGGTACCGATGGTGTCGACCAATTCAGGTTCCTCCGGGAAGCCGCCGACGAAGGGGAGAGGATGGCATTTTCCGAGTCCGATCAAGGCCTTCCGGCATTCCAAAATCTCCAAGATTGGTTCTGAACGGTCGCCTGTGTACAGAGCCAAACCATGGCTGAAACTTCCGGCGACGATTCCAAACCCCACCTCATCTTCTGCTACGGCACACTCAAGCGAGGCTTCTACAACCACAAGCTCGATCACCAAGGAATTGATCGACCAAGACGACGCCGTCTTCATCGGCCCCTACATTACCCGCCACACCTACCCCCTCGTCTGCGGCCCTAGCTCACGGCATTCCCTACCTGATCAACCTCCCCGGTTCGGGTCACCGGATCAAGTGCGTAGAGATCGCCCGGTTCGACGAGCTGGAAGGCACCTCGGTCGGGCAGTACGAGCGGCTCCCGGTTCAGTTGGCGGTCAATGCGGACAAGGACGGCGTCGTTCCAGTGGAGGCCGAGGCCTATTTCGCTCACAGAAGCTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

357

Amino Acids

39.16

Weight (kDa)

10.52

Isoelectric Point (pI)

83.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 815
Acc65I GGTACC 1 cut(s) 547
AccB1I GGYRCC 2 cut(s) 547, 960
AccB7I CCANNNNNTGG 1 cut(s) 696
AccBSI CCGCTC 6 cut(s) 72, 261, 288, 358, 396, 983
AccI GTMKAC 3 cut(s) 12, 18, 560
AccII CGCG 4 cut(s) 96, 110, 216, 403
AclWI GGATC 2 cut(s) 249, 927
AcoI YGGCCR 2 cut(s) 316, 359
AcyI GRCGYC 3 cut(s) 210, 813, 1024
AfaI GTAC 4 cut(s) 432, 549, 683, 978
AgsI TTSAA 1 cut(s) 476
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 6 cut(s) 226, 294, 780, 873, 953, 1066
AluI AGCT 6 cut(s) 226, 294, 780, 873, 953, 1066
AlwI GGATC 2 cut(s) 249, 927
Ama87I CYCGRG 2 cut(s) 230, 437
AoxI GGCC 9 cut(s) 316, 359, 414, 444, 630, 826, 865, 1039, 1045
ApeKI GCWGC 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 461
Asp718I GGTACC 1 cut(s) 547
AspLEI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
AspS9I GGNCC 3 cut(s) 445, 827, 866
AsuC2I CCSGG 5 cut(s) 449, 580, 904, 941, 990
AsuHPI GGTGA 3 cut(s) 466, 778, 906
AvaI CYCGRG 2 cut(s) 230, 437
BanI GGYRCC 2 cut(s) 547, 960
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 2 cut(s) 371, 811
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 547, 600
BceAI ACGGC 5 cut(s) 223, 762, 800, 893, 1037
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BciT130I CCWGG 1 cut(s) 413
BclI TGATCA 1 cut(s) 892
BcnI CCSGG 5 cut(s) 449, 580, 904, 941, 990
BfaI CTAG 1 cut(s) 870
BfoI RGCGCY 2 cut(s) 64, 103
Bme1390I CCNGG 6 cut(s) 413, 449, 580, 904, 941, 990
BmeT110I CYCGRG 2 cut(s) 230, 437
BmgT120I GGNCC 3 cut(s) 445, 827, 866
BmiI GGNNCC 7 cut(s) 410, 447, 549, 574, 829, 962, 987
BmrFI CCNGG 6 cut(s) 413, 449, 580, 904, 941, 990
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 2 cut(s) 371, 811
BpmI CTGGAG 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 739
BpuMI CCSGG 5 cut(s) 449, 580, 904, 941, 990
BsaHI GRCGYC 3 cut(s) 210, 813, 1024
BsaJI CCNNGG 7 cut(s) 264, 447, 695, 789, 902, 964, 1042
BsaWI WCCGGW 2 cut(s) 348, 916
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse118I RCCGGY 1 cut(s) 442
Bse1I ACTGG 1 cut(s) 1032
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 7 cut(s) 264, 447, 695, 789, 902, 964, 1042
BseGI GGATG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 1032
BseRI GAGGAG 7 cut(s) 38, 41, 151, 166, 169, 421, 526
BseX3I CGGCCG 2 cut(s) 316, 359
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 4 cut(s) 96, 110, 216, 403
Bsh1285I CGRYCG 5 cut(s) 319, 349, 362, 674, 970
BshFI GGCC 9 cut(s) 318, 361, 416, 446, 632, 828, 867, 1041, 1047
BshNI GGYRCC 2 cut(s) 547, 960
BsiEI CGRYCG 5 cut(s) 319, 349, 362, 674, 970
BsiHKCI CYCGRG 2 cut(s) 230, 437
BsmI GAATGC 2 cut(s) 640, 880
BsnI GGCC 9 cut(s) 318, 361, 416, 446, 632, 828, 867, 1041, 1047
BsoBI CYCGRG 2 cut(s) 230, 437
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
Bsp19I CCATGG 1 cut(s) 695
BspANI GGCC 9 cut(s) 318, 361, 416, 446, 632, 828, 867, 1041, 1047
BspFNI CGCG 4 cut(s) 96, 110, 216, 403
BspLI GGNNCC 7 cut(s) 410, 447, 549, 574, 829, 962, 987
BspPI GGATC 2 cut(s) 249, 927
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 547, 960
BsrBI CCGCTC 6 cut(s) 72, 261, 288, 358, 396, 983
BsrFI RCCGGY 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 1 cut(s) 1032
BssAI RCCGGY 1 cut(s) 442
BssECI CCNNGG 7 cut(s) 264, 447, 695, 789, 902, 964, 1042
BssMI GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
BssNI GRCGYC 3 cut(s) 210, 813, 1024
BssT1I CCWWGG 2 cut(s) 695, 789
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 4 cut(s) 62, 175, 193, 471
BstACI GRCGYC 3 cut(s) 210, 813, 1024
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 5 cut(s) 98, 239, 356, 418, 444
BstDSI CCRYGG 2 cut(s) 264, 695
BstEII GGTNACC 1 cut(s) 912
BstENI CCTNNNNNAGG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 611
BstFNI CGCG 4 cut(s) 96, 110, 216, 403
BstH2I RGCGCY 2 cut(s) 64, 103
BstHHI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
BstKTI GATC 7 cut(s) 257, 627, 786, 801, 895, 922, 937
BstMBI GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
BstMCI CGRYCG 5 cut(s) 319, 349, 362, 674, 970
BstNI CCWGG 1 cut(s) 413
BstPI GGTNACC 1 cut(s) 912
BstSCI CCNGG 6 cut(s) 411, 447, 578, 902, 939, 988
BstUI CGCG 4 cut(s) 96, 110, 216, 403
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 2 cut(s) 371, 811
BstZI CGGCCG 2 cut(s) 316, 359
BsuRI GGCC 9 cut(s) 318, 361, 416, 446, 632, 828, 867, 1041, 1047
BtgI CCRYGG 2 cut(s) 264, 695
BtsCI GGATG 1 cut(s) 611
BtsIMutI CAGTG 1 cut(s) 1039
Cac8I GCNNGC 5 cut(s) 98, 239, 356, 418, 444
CciNI GCGGCCGC 1 cut(s) 316
CfoI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
Cfr10I RCCGGY 1 cut(s) 442
Cfr13I GGNCC 3 cut(s) 445, 827, 866
CseI GACGC 4 cut(s) 199, 205, 821, 1013
Csp6I GTAC 4 cut(s) 431, 548, 682, 977
CviAII CATG 1 cut(s) 696
CviQI GTAC 4 cut(s) 431, 548, 682, 977
DpnI GATC 7 cut(s) 256, 626, 785, 800, 894, 921, 936
DpnII GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
DrdI GACNNNNNNGTC 1 cut(s) 815
DseDI GACNNNNNNGTC 1 cut(s) 815
EaeI YGGCCR 2 cut(s) 316, 359
EagI CGGCCG 2 cut(s) 316, 359
Eam1104I CTCTTC 4 cut(s) 62, 175, 193, 471
EarI CTCTTC 4 cut(s) 62, 175, 193, 471
EclXI CGGCCG 2 cut(s) 316, 359
Eco130I CCWWGG 2 cut(s) 695, 789
Eco147I AGGCCT 2 cut(s) 632, 1047
Eco24I GRGCYC 1 cut(s) 243
Eco52I CGGCCG 2 cut(s) 316, 359
Eco88I CYCGRG 2 cut(s) 230, 437
Eco91I GGTNACC 1 cut(s) 912
EcoNI CCTNNNNNAGG 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 912
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 695, 789
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 695, 789
FaeI CATG 1 cut(s) 699
FaiI YATR 2 cut(s) 509, 697
FalI AAGNNNNNCTT 2 cut(s) 748, 780
FatI CATG 1 cut(s) 695
FauI CCCGC 5 cut(s) 200, 208, 266, 305, 848
FbaI TGATCA 1 cut(s) 892
FblI GTMKAC 3 cut(s) 12, 18, 560
FokI GGATG 1 cut(s) 618
FriOI GRGCYC 1 cut(s) 243
FspBI CTAG 1 cut(s) 870
GlaI GCGC 6 cut(s) 62, 101, 111, 127, 137, 154
GsuI CTGGAG 1 cut(s) 274
HaeII RGCGCY 2 cut(s) 64, 103
HaeIII GGCC 9 cut(s) 318, 361, 416, 446, 632, 828, 867, 1041, 1047
HgaI GACGC 4 cut(s) 199, 205, 821, 1013
HhaI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
Hin1I GRCGYC 3 cut(s) 210, 813, 1024
Hin1II CATG 1 cut(s) 699
Hin6I GCGC 6 cut(s) 61, 100, 110, 126, 136, 153
HinP1I GCGC 6 cut(s) 61, 100, 110, 126, 136, 153
HincII GTYRAC 2 cut(s) 19, 561
HindII GTYRAC 2 cut(s) 19, 561
HindIII AAGCTT 2 cut(s) 224, 1064
HinfI GANTC 5 cut(s) 167, 271, 367, 619, 718
HphI GGTGA 3 cut(s) 466, 778, 906
Hpy166II GTNNAC 4 cut(s) 13, 19, 561, 682
Hpy188I TCNGA 5 cut(s) 45, 166, 618, 624, 667
Hpy188III TCNNGA 3 cut(s) 34, 230, 232
Hpy8I GTNNAC 4 cut(s) 13, 19, 561, 682
HpyAV CCTTC 4 cut(s) 381, 589, 643, 951
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 3 cut(s) 15, 132, 303
HpySE526I ACGT 3 cut(s) 15, 132, 303
Hsp92I GRCGYC 3 cut(s) 210, 813, 1024
Hsp92II CATG 1 cut(s) 699
HspAI GCGC 6 cut(s) 61, 100, 110, 126, 136, 153
KpnI GGTACC 1 cut(s) 551
KroI GCCGGC 1 cut(s) 442
KroNI GCCGGC 1 cut(s) 444
Ksp22I TGATCA 1 cut(s) 892
Kzo9I GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 6 cut(s) 266, 293, 299, 351, 408, 991
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 870
MaeII ACGT 3 cut(s) 15, 132, 303
MaeIII GTNAC 1 cut(s) 912
MalI GATC 7 cut(s) 256, 626, 785, 800, 894, 921, 936
MbiI CCGCTC 6 cut(s) 72, 261, 288, 358, 396, 983
MboI GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
MboII GAAGA 8 cut(s) 79, 162, 180, 376, 469, 488, 729, 811
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 2 cut(s) 565, 794
MlyI GAGTC 3 cut(s) 161, 361, 628
MmeI TCCRAC 3 cut(s) 189, 207, 286
MroNI GCCGGC 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 461
MspR9I CCNGG 6 cut(s) 413, 449, 580, 904, 941, 990
Mva1269I GAATGC 2 cut(s) 640, 880
MvaI CCWGG 1 cut(s) 413
MvnI CGCG 4 cut(s) 96, 110, 216, 403
NaeI GCCGGC 1 cut(s) 444
NciI CCSGG 5 cut(s) 449, 580, 904, 941, 990
NcoI CCATGG 1 cut(s) 695
NdeII GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
NgoMIV GCCGGC 1 cut(s) 442
NlaIII CATG 1 cut(s) 699
NlaIV GGNNCC 7 cut(s) 410, 447, 549, 574, 829, 962, 987
NmeAIII GCCGAG 1 cut(s) 1067
NmuCI GTSAC 1 cut(s) 912
NotI GCGGCCGC 1 cut(s) 316
PaeR7I CTCGAG 1 cut(s) 230
PceI AGGCCT 2 cut(s) 632, 1047
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 4 cut(s) 213, 807, 943, 976
PctI GAATGC 2 cut(s) 640, 880
PdiI GCCGGC 1 cut(s) 444
PdmI GAANNNNTTC 1 cut(s) 461
PfeI GAWTC 2 cut(s) 271, 718
PflFI GACNNNGTC 3 cut(s) 209, 815, 1023
PflMI CCANNNNNTGG 1 cut(s) 696
PfoI TCCNGGA 1 cut(s) 578
PleI GAGTC 3 cut(s) 161, 361, 627
PpsI GAGTC 3 cut(s) 161, 361, 627
Psp6I CCWGG 1 cut(s) 411
PspEI GGTNACC 1 cut(s) 912
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 7 cut(s) 410, 447, 549, 574, 829, 962, 987
PspPI GGNCC 3 cut(s) 445, 827, 866
PsyI GACNNNGTC 3 cut(s) 209, 815, 1023
RsaI GTAC 4 cut(s) 432, 549, 683, 978
RsaNI GTAC 4 cut(s) 431, 548, 682, 977
SalI GTCGAC 2 cut(s) 17, 559
SapI GCTCTTC 1 cut(s) 62
Sau3AI GATC 7 cut(s) 254, 624, 783, 798, 892, 919, 934
Sau96I GGNCC 3 cut(s) 445, 827, 866
SchI GAGTC 3 cut(s) 161, 361, 628
ScrFI CCNGG 6 cut(s) 413, 449, 580, 904, 941, 990
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 230
SgrDI CGTCGACG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 230, 754
SmoI CTYRAG 2 cut(s) 230, 754
Sse9I AATT 2 cut(s) 565, 794
SseBI AGGCCT 2 cut(s) 632, 1047
SspMI CTAG 1 cut(s) 870
StuI AGGCCT 2 cut(s) 632, 1047
StyD4I CCNGG 6 cut(s) 411, 447, 578, 902, 939, 988
StyI CCWWGG 2 cut(s) 695, 789
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 3 cut(s) 18, 135, 306
TaqI TCGA 8 cut(s) 18, 231, 327, 533, 560, 782, 801, 946
TaqII GACCGA 1 cut(s) 956
TasI AATT 2 cut(s) 565, 794
TatI WGTACW 1 cut(s) 681
TfiI GAWTC 2 cut(s) 271, 718
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 1 cut(s) 912
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 912
TspDTI ATGAA 1 cut(s) 811
TspGWI ACGGA 3 cut(s) 253, 376, 1059
TspRI CASTG 1 cut(s) 1039
Tth111I GACNNNGTC 3 cut(s) 209, 815, 1023
Van91I CCANNNNNTGG 1 cut(s) 696
XagI CCTNNNNNAGG 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 230
XmiI GTMKAC 3 cut(s) 12, 18, 560
XmnI GAANNNNTTC 1 cut(s) 461
XspI CTAG 1 cut(s) 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.