RchiOBHm_Chr7g0209881

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015969
Physical Location & Seq
Reverse (-)
27362493 .. 27363465
973 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18781

Sequence Viewer

Length: 696 bp
ATGGCGGCGGTCTACGTCGACGAGGAGGAGGTCTGGAAATGTCTGAAACACCCCTCCAAGCGCCGGAAGAGCGGCATCTGCCACATTTGCCTCCGCGAGCGCCTCGCCGCGCTCTGCCCCGACTGCGCTAACGTGCGCCCCTGCCCCTGCTGCGCCACCACCTCCTCCGACTCTTCCTCCTCCTCCAACTCCTCCCGCTTCCCCGCCGACGGCGTCCGCGTCGCCAAGCTTCTCGAGAGCGAGCCCTCTTTCCGGCGATCCCGTTCCGTGGCGATTCCCTCTTTCCTCCGCTCCAGCTCCCGCTACGTTGGAAGCGGCGGCCGCCTCTTCGACCTCACTACTTCCGGCGACAGGAGCGAGCGGCCAAAGACTCCTTCTTTTTGGTCGTCCGTGTTCCGCTCGTCGCGGAGGAGCCAGGCCAGCGAGTTCAGCGTACAACCCGAGCCGGCCCCGGCGGTGAAGAAGTTCGGCGAGATTGAAGAGGTGGAACAACAAGACGACGAGGCGGCGATGAGGAGGACGATGATGATGAGGTCGAGGTCGGTGGCGGTACCGATGGTGTCGACCAATTCCGGTTCCTCCGGGAAGCCGCCAACGAAGGGGAGGGGATGGCATTTTCCAAGTCCGATCAAGGCCTTCCGGCATTCCAAAATCTCCAAGATTGGTTCTGAACGGTCGCCTGTGTACAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

231

Amino Acids

25.54

Weight (kDa)

9.95

Isoelectric Point (pI)

88.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015969)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32690 AT2G35200
fragaria_vesca FvH4_5g22200
malus_domestica MD06G1035300.v1.1 MD16G1273500.v1.1
prunus_persica Prupe.5G034500_v2.0.a1
pyrus_communis pycom06g02910 pycom16g24330
rosa_chinensis RchiOBHm_Chr7g0209881
rosa_laevigata RLG00000003081
rosa_multiflora Rmu_sc0003776.1_g000006
rosa_roxburghii Rroxscaffold_3G00248870
rosa_rugosa Rorug07G0116800
rosa_samantha Rh7BG245100
rosa_wichuraiana Rw7G021260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 550
AccBSI CCGCTC 4 cut(s) 72, 291, 361, 399
AccI GTMKAC 3 cut(s) 12, 18, 563
AccII CGCG 4 cut(s) 96, 110, 219, 406
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 319, 362
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 3 cut(s) 435, 552, 686
AfiI CCNNNNNNNGG 6 cut(s) 63, 209, 252, 268, 351, 599
AgsI TTSAA 1 cut(s) 479
AjnI CCWGG 1 cut(s) 414
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
AluBI AGCT 2 cut(s) 229, 297
AluI AGCT 2 cut(s) 229, 297
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 2 cut(s) 233, 440
AoxI GGCC 5 cut(s) 319, 362, 417, 447, 633
ApeKI GCWGC 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 464
Asp718I GGTACC 1 cut(s) 550
AspLEI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
AspS9I GGNCC 1 cut(s) 448
AsuC2I CCSGG 2 cut(s) 452, 583
AsuHPI GGTGA 1 cut(s) 469
AvaI CYCGRG 2 cut(s) 233, 440
BanI GGYRCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 550, 603
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 416
BcnI CCSGG 2 cut(s) 452, 583
BfoI RGCGCY 2 cut(s) 64, 103
Bme1390I CCNGG 3 cut(s) 416, 452, 583
BmeT110I CYCGRG 2 cut(s) 233, 440
BmgT120I GGNCC 1 cut(s) 448
BmiI GGNNCC 4 cut(s) 413, 450, 552, 577
BmrFI CCNGG 3 cut(s) 416, 452, 583
BmsI GCATC 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 452, 583
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 267, 450
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 161, 191
Bsc4I CCNNNNNNNGG 6 cut(s) 63, 209, 252, 268, 351, 599
Bse118I RCCGGY 1 cut(s) 445
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 2 cut(s) 267, 450
BseGI GGATG 1 cut(s) 614
BseLI CCNNNNNNNGG 6 cut(s) 63, 209, 252, 268, 351, 599
BseRI GAGGAG 8 cut(s) 38, 41, 154, 169, 172, 181, 424, 529
BseX3I CGGCCG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 137
Bsh1236I CGCG 4 cut(s) 96, 110, 219, 406
Bsh1285I CGRYCG 2 cut(s) 322, 677
BshFI GGCC 5 cut(s) 321, 364, 419, 449, 635
BshNI GGYRCC 1 cut(s) 550
BsiEI CGRYCG 2 cut(s) 322, 677
BsiHKCI CYCGRG 2 cut(s) 233, 440
BsiSI CCGG 8 cut(s) 64, 253, 345, 446, 452, 573, 582, 640
BslI CCNNNNNNNGG 6 cut(s) 63, 209, 252, 268, 351, 599
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 5 cut(s) 321, 364, 419, 449, 635
BsoBI CYCGRG 2 cut(s) 233, 440
Bsp1286I GDGCHC 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 2 cut(s) 257, 627
BspANI GGCC 5 cut(s) 321, 364, 419, 449, 635
BspFNI CGCG 4 cut(s) 96, 110, 219, 406
BspLI GGNNCC 4 cut(s) 413, 450, 552, 577
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 1 cut(s) 550
BsrBI CCGCTC 4 cut(s) 72, 291, 361, 399
BsrFI RCCGGY 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 2 cut(s) 267, 450
BssMI GATC 2 cut(s) 257, 627
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 4 cut(s) 62, 178, 332, 474
BstACI GRCGYC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 5 cut(s) 98, 242, 359, 421, 447
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 614
BstFNI CGCG 4 cut(s) 96, 110, 219, 406
BstH2I RGCGCY 2 cut(s) 64, 103
BstHHI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
BstKTI GATC 2 cut(s) 260, 630
BstMBI GATC 2 cut(s) 257, 627
BstMCI CGRYCG 2 cut(s) 322, 677
BstMWI GCNNNNNNNGC 9 cut(s) 69, 78, 87, 123, 150, 321, 354, 420, 429
BstNI CCWGG 1 cut(s) 416
BstSCI CCNGG 3 cut(s) 414, 450, 581
BstUI CGCG 4 cut(s) 96, 110, 219, 406
BstV1I GCAGC 1 cut(s) 137
BstZI CGGCCG 1 cut(s) 319
BsuRI GGCC 5 cut(s) 321, 364, 419, 449, 635
BtgI CCRYGG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 1 cut(s) 614
Cac8I GCNNGC 5 cut(s) 98, 242, 359, 421, 447
CciNI GCGGCCGC 1 cut(s) 319
CfoI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
Cfr10I RCCGGY 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 448
CseI GACGC 2 cut(s) 202, 208
Csp6I GTAC 3 cut(s) 434, 551, 685
CviQI GTAC 3 cut(s) 434, 551, 685
DpnI GATC 2 cut(s) 259, 629
DpnII GATC 2 cut(s) 257, 627
EaeI YGGCCR 2 cut(s) 319, 362
EagI CGGCCG 1 cut(s) 319
Eam1104I CTCTTC 4 cut(s) 62, 178, 332, 474
EarI CTCTTC 4 cut(s) 62, 178, 332, 474
EclXI CGGCCG 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 246
Eco52I CGGCCG 1 cut(s) 319
Eco88I CYCGRG 2 cut(s) 233, 440
EcoRII CCWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 246
FauI CCCGC 3 cut(s) 203, 211, 308
FblI GTMKAC 3 cut(s) 12, 18, 563
FokI GGATG 1 cut(s) 621
FriOI GRGCYC 1 cut(s) 246
GlaI GCGC 6 cut(s) 62, 101, 111, 127, 137, 154
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 2 cut(s) 64, 103
HaeIII GGCC 5 cut(s) 321, 364, 419, 449, 635
HapII CCGG 8 cut(s) 64, 253, 345, 446, 452, 573, 582, 640
HgaI GACGC 2 cut(s) 202, 208
HhaI GCGC 6 cut(s) 63, 102, 112, 128, 138, 155
Hin1I GRCGYC 1 cut(s) 213
Hin6I GCGC 6 cut(s) 61, 100, 110, 126, 136, 153
HinP1I GCGC 6 cut(s) 61, 100, 110, 126, 136, 153
HincII GTYRAC 2 cut(s) 19, 564
HindII GTYRAC 2 cut(s) 19, 564
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 3 cut(s) 170, 274, 370
HpaII CCGG 8 cut(s) 64, 253, 345, 446, 452, 573, 582, 640
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 4 cut(s) 13, 19, 564, 685
Hpy188I TCNGA 4 cut(s) 45, 169, 627, 670
Hpy188III TCNNGA 3 cut(s) 34, 233, 235
Hpy8I GTNNAC 4 cut(s) 13, 19, 564, 685
Hpy99I CGWCG 6 cut(s) 20, 23, 212, 224, 406, 503
HpyAV CCTTC 3 cut(s) 384, 592, 646
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 3 cut(s) 15, 132, 306
HpyF10VI GCNNNNNNNGC 9 cut(s) 69, 78, 87, 123, 150, 321, 354, 420, 429
HpySE526I ACGT 3 cut(s) 15, 132, 306
Hsp92I GRCGYC 1 cut(s) 213
HspAI GCGC 6 cut(s) 61, 100, 110, 126, 136, 153
KpnI GGTACC 1 cut(s) 554
KroI GCCGGC 1 cut(s) 445
KroNI GCCGGC 1 cut(s) 447
Kzo9I GATC 2 cut(s) 257, 627
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 4 cut(s) 296, 302, 354, 411
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 84
MaeII ACGT 3 cut(s) 15, 132, 306
MalI GATC 2 cut(s) 259, 629
MbiI CCGCTC 4 cut(s) 72, 291, 361, 399
MboI GATC 2 cut(s) 257, 627
MboII GAAGA 5 cut(s) 79, 165, 319, 472, 491
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 1 cut(s) 568
MlyI GAGTC 2 cut(s) 164, 364
MmeI TCCRAC 3 cut(s) 192, 210, 289
MroNI GCCGGC 1 cut(s) 445
MroXI GAANNNNTTC 1 cut(s) 464
MseI TTAA 1 cut(s) 694
MspI CCGG 8 cut(s) 64, 253, 345, 446, 452, 573, 582, 640
MspR9I CCNGG 3 cut(s) 416, 452, 583
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 1 cut(s) 416
MvnI CGCG 4 cut(s) 96, 110, 219, 406
MwoI GCNNNNNNNGC 9 cut(s) 69, 78, 87, 123, 150, 321, 354, 420, 429
NaeI GCCGGC 1 cut(s) 447
NciI CCSGG 2 cut(s) 452, 583
NdeII GATC 2 cut(s) 257, 627
NgoMIV GCCGGC 1 cut(s) 445
NlaIV GGNNCC 4 cut(s) 413, 450, 552, 577
NotI GCGGCCGC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 233
PceI AGGCCT 1 cut(s) 635
PciSI GCTCTTC 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 1 cut(s) 447
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 274
PflFI GACNNNGTC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 581
PleI GAGTC 2 cut(s) 164, 364
PpsI GAGTC 2 cut(s) 164, 364
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 4 cut(s) 413, 450, 552, 577
PspPI GGNCC 1 cut(s) 448
PsyI GACNNNGTC 1 cut(s) 212
RsaI GTAC 3 cut(s) 435, 552, 686
RsaNI GTAC 3 cut(s) 434, 551, 685
SalI GTCGAC 2 cut(s) 17, 562
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 694
Sau3AI GATC 2 cut(s) 257, 627
Sau96I GGNCC 1 cut(s) 448
SchI GAGTC 2 cut(s) 164, 364
ScrFI CCNGG 3 cut(s) 416, 452, 583
SduI GDGCHC 1 cut(s) 246
SfaNI GCATC 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 233
SgrDI CGTCGACG 1 cut(s) 17
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 568
SseBI AGGCCT 1 cut(s) 635
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 3 cut(s) 414, 450, 581
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 3 cut(s) 18, 135, 309
TaqI TCGA 5 cut(s) 18, 234, 330, 536, 563
TasI AATT 1 cut(s) 568
TatI WGTACW 1 cut(s) 684
TauI GCSGC 9 cut(s) 8, 75, 110, 318, 321, 324, 364, 509, 592
TfiI GAWTC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 694
Tru9I TTAA 1 cut(s) 694
TseI GCWGC 1 cut(s) 150
TspGWI ACGGA 2 cut(s) 256, 379
Tth111I GACNNNGTC 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 3 cut(s) 12, 18, 563
XmnI GAANNNNTTC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.