Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008963

Physical Location & Seq

Genomic Coordinates Reverse (-)

11913928 .. 11914735

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCGTAATGTTTCTTATATTACATGTGCAGAAGATATGCGTGGTCCTATCGAAACAGTGATACGATCTGGAGCTGTACATCGTCTCATTCAGTTTCTTCTCGATGAAAGTTTCCCTAAGCTTCAATCAGTAATCGATGCAAATTTGATTCCAACCTTGGTCAAACTGACTCAGAATGCTGAATTTGACATGAAGAAAGAATCTGTATGCGCAATTTCAAATGCGACCTTACTTGGTTCTCATGATCAAATCAAATACATGGTGGAGCAGAGCTGCATCAAACCTTTATGTGATATCCTGTTTTGTCCAGATGTAAAAACCATCTTAAAGTGTCTGGATGGAATGGAAAACACATTGAAGGTTGGAGAGGCTGAAAAGAACGCAGGAGACGACGTGAGCTGGTATACTCGACTGATCGAAGCGGAAGGGCTAGATAAGATTTTGAACCTGCAAAGACACGAAAACATCGAGATCTACGACAAGGCTTTGAAGATTCTGCAGACTTACTGGCTTGAAGAGGATGATGAGGATATACAACAACCTCCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0007276 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0009506 GO:0009555 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0019953 GO:0022412 GO:0022414 GO:0030054 GO:0030154 GO:0030312 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045184 GO:0046907 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051704 GO:0055044 GO:0055046 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm Arm_3 IBB

Protein Analysis

183

Amino Acids

20.8

Weight (kDa)

4.66

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	42 - 75	4.8e-06	Armadillo/beta-catenin-like repeat
Arm_3	PF16186	135 - 180	4.7e-17	Atypical Arm repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008963)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32880 AT3G06720 AT3G06720 AT4G16143 AT4G16143
fragaria_vesca	FvH4_4g19270 FvH4_4g19270
malus_domestica	MD13G1158900.v1.1 MD16G1159100.v1.1
prunus_persica	Prupe.1G125900_v2.0.a1
pyrus_communis	pycom16g13410
rosa_chinensis	RchiOBHm_Chr4g0424261
rosa_laevigata	RLG00000007492
rosa_multiflora	Rmu_sc0006403.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366200
rosa_rugosa	Rorug04G0194700 Rorug04G0194800
rosa_samantha	Rh4AG252100 Rh4BG257500 Rh4CG268200 Rh4DG251900
rosa_wichuraiana	Rw4G021740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	211
Acc36I	ACCTGC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	142, 182
AfaI	GTAC	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	6 cut(s)	125, 219, 358, 445, 490, 515
AjiI	CACGTC	1 cut(s)	394
AluBI	AGCT	4 cut(s)	74, 121, 273, 399
AluI	AGCT	4 cut(s)	74, 121, 273, 399
Alw26I	GTCTC	2 cut(s)	89, 381
ApeKI	GCWGC	1 cut(s)	273
ApoI	RAATTY	2 cut(s)	142, 182
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	2 cut(s)	329, 332
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	2 cut(s)	89, 381
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	456
BglII	AGATCT	1 cut(s)	471
BisI	GCNGC	1 cut(s)	274
BlsI	GCNGC	1 cut(s)	275
Bme18I	GGWCC	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	44
BmsI	GCATC	2 cut(s)	127, 285
BpmI	CTGGAG	1 cut(s)	90
Bpu10I	CCTNAGC	1 cut(s)	117
Bsa29I	ATCGAT	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	378, 408
Bse1I	ACTGG	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	343, 526
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	512
BseXI	GCAGC	1 cut(s)	260
BsgI	GTGCAG	1 cut(s)	48
BshVI	ATCGAT	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	89, 381
BsmBI	CGTCTC	2 cut(s)	89, 381
BsmI	GAATGC	1 cut(s)	181
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	65, 244, 414, 471
BspACI	CCGC	1 cut(s)	422
BspCNI	CTCAG	1 cut(s)	184
BspDI	ATCGAT	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	501
BspMI	ACCTGC	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	4 cut(s)	65, 244, 414, 471
BssNAI	GTATAC	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	156
Bst1107I	GTATAC	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	510
BstAUI	TGTACA	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	117, 171
BstF5I	GGATG	2 cut(s)	343, 526
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	4 cut(s)	68, 247, 417, 474
BstMAI	GTCTC	2 cut(s)	89, 381
BstMBI	GATC	4 cut(s)	65, 244, 414, 471
BstNSI	RCATGY	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BstZ17I	GTATAC	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	343, 526
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	456
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	4 cut(s)	24, 190, 242, 259
CviJI	RGCY	8 cut(s)	74, 121, 273, 371, 399, 430, 485, 511
CviKI_1	RGCY	8 cut(s)	74, 121, 273, 371, 399, 430, 485, 511
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	2 cut(s)	117, 171
DpnI	GATC	4 cut(s)	67, 246, 416, 473
DpnII	GATC	4 cut(s)	65, 244, 414, 471
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	2 cut(s)	89, 381
FaeI	CATG	4 cut(s)	27, 193, 245, 262
FatI	CATG	4 cut(s)	23, 189, 241, 258
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	1 cut(s)	274
FokI	GGATG	2 cut(s)	350, 533
Fsp4HI	GCNGC	1 cut(s)	274
FspBI	CTAG	1 cut(s)	431
FspI	TGCGCA	1 cut(s)	211
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	27, 193, 245, 262
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	148, 169, 200, 493
Hpy166II	GTNNAC	1 cut(s)	405
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	6 cut(s)	69, 101, 242, 308, 335, 469
Hpy8I	GTNNAC	1 cut(s)	405
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	352, 419
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	5 cut(s)	29, 140, 276, 451, 499
HpyF3I	CTNAG	2 cut(s)	117, 171
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	27, 193, 245, 262
HspAI	GCGC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	65, 244, 414, 471
LmnI	GCTCC	2 cut(s)	71, 265
LpnPI	CCDG	8 cut(s)	54, 311, 320, 321, 369, 385, 461, 493
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	2 cut(s)	127, 285
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	393
MalI	GATC	4 cut(s)	67, 246, 416, 473
MboI	GATC	4 cut(s)	65, 244, 414, 471
MboII	GAAGA	5 cut(s)	44, 89, 205, 502, 527
MflI	RGATCY	1 cut(s)	471
MluCI	AATT	3 cut(s)	142, 182, 213
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	2 cut(s)	176, 343
MnlI	CCTC	4 cut(s)	361, 511, 520, 552
MseI	TTAA	2 cut(s)	326, 550
Mva1269I	GAATGC	1 cut(s)	181
NdeII	GATC	4 cut(s)	65, 244, 414, 471
NlaIII	CATG	4 cut(s)	27, 193, 245, 262
NsbI	TGCGCA	1 cut(s)	211
NspI	RCATGY	1 cut(s)	27
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	3 cut(s)	387, 465, 474
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	148, 200, 493
PkrI	GCNGC	1 cut(s)	275
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PscI	ACATGT	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	471
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	326, 550
SatI	GCNGC	1 cut(s)	274
Sau3AI	GATC	4 cut(s)	65, 244, 414, 471
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	127, 285
SfcI	CTRYAG	1 cut(s)	497
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	3 cut(s)	142, 182, 213
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	6 cut(s)	51, 102, 135, 409, 417, 468
TasI	AATT	3 cut(s)	142, 182, 213
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	3 cut(s)	148, 200, 493
Tru1I	TTAA	2 cut(s)	326, 550
Tru9I	TTAA	2 cut(s)	326, 550
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	120, 206
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	2 cut(s)	142, 182
XceI	RCATGY	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.