Rorug04G0194800

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
33894653 .. 33894996
344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0194800.1

Sequence Viewer

Length: 165 bp
ATGAGCTCCGGCAAAAACTCCAAAGAGAGGATTCACAAGGAGGAAATGGAGAAATGGCAGGATGAGATCAGAGAGTTGCGCGCGATTGATGCTTTGAATGAGGAAGCTAGTGCTGTGCTGCATAATGCTACATATTTGCTTCAGAATCCTCATGTTGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

54

Amino Acids

6.26

Weight (kDa)

5.2

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0008963)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 81, 83
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 1 cut(s) 97
AluBI AGCT 2 cut(s) 6, 107
AluI AGCT 2 cut(s) 6, 107
Alw21I GWGCWC 1 cut(s) 8
ApeKI GCWGC 1 cut(s) 118
AspLEI GCGC 2 cut(s) 81, 83
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 105
BfaI CTAG 1 cut(s) 108
BisI GCNGC 1 cut(s) 119
BlsI GCNGC 1 cut(s) 120
BmsI GCATC 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 67
BseLI CCNNNNNNNGG 1 cut(s) 27
BsePI GCGCGC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 105
Bsh1236I CGCG 2 cut(s) 81, 83
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 66
BspFNI CGCG 2 cut(s) 81, 83
BssHII GCGCGC 1 cut(s) 79
BssMI GATC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 81
BstF5I GGATG 1 cut(s) 67
BstFNI CGCG 2 cut(s) 81, 83
BstHHI GCGC 2 cut(s) 81, 83
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstUI CGCG 2 cut(s) 81, 83
BstV1I GCAGC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 2 cut(s) 81, 83
CviAII CATG 1 cut(s) 152
CviJI RGCY 2 cut(s) 6, 107
CviKI_1 RGCY 2 cut(s) 6, 107
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 155
FaiI YATR 3 cut(s) 123, 133, 153
FatI CATG 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 119
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 119
FspBI CTAG 1 cut(s) 108
FspEI CC 9 cut(s) 13, 22, 23, 26, 32, 34, 40, 44, 86
GlaI GCGC 2 cut(s) 80, 82
GluI GCNGC 1 cut(s) 119
HapII CCGG 1 cut(s) 9
HhaI GCGC 2 cut(s) 81, 83
Hin1II CATG 1 cut(s) 155
Hin6I GCGC 2 cut(s) 79, 81
HinP1I GCGC 2 cut(s) 79, 81
HinfI GANTC 3 cut(s) 31, 145, 158
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 71, 144
Hpy188III TCNNGA 1 cut(s) 162
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
Hsp92II CATG 1 cut(s) 155
HspAI GCGC 2 cut(s) 79, 81
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 2 cut(s) 22, 44
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 108
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 8
MnlI CCTC 4 cut(s) 21, 34, 94, 159
MspI CCGG 1 cut(s) 9
MvnI CGCG 2 cut(s) 81, 83
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 155
PauI GCGCGC 1 cut(s) 79
PfeI GAWTC 3 cut(s) 31, 145, 158
PkrI GCNGC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 8
PteI GCGCGC 1 cut(s) 79
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 119
Sau3AI GATC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 8, 109
SfaNI GCATC 1 cut(s) 79
SgeI CNNG 6 cut(s) 21, 49, 71, 92, 94, 120
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 31, 145, 158
TseI GCWGC 1 cut(s) 118
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.