Rh4BG257500

Belongs to the importin alpha family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008963
Physical Location & Seq
Reverse (-)
42938177 .. 42942301
4125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG257500.1

Sequence Viewer

Length: 1305 bp
ATGTCGCTCAGGCCGAACGCCAGGACTGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGACGCCGAGGAGGGCCGTCGCCGGAGAGAGGACAACATGGTCGAGATCCGGAAGAGCAAGAGGGAGGAGAGTTTGTTAAAGAAGCGCCGGGAAGGTCTTCAAGCTCAGCAATTCCCGGCCTCTGTTCAGCCACCGAACCTCGAGAAGAAGTTGGAGAGTCTACCGTCGATGGTTGCCGGGGTTTGGTCCTCCGAAAGTGCTCTGCAGCTGGAGGCTACTACGCAGTTTCGGAAACTACTTTCTATAGAAAGAAGCCCTCCAATTGAGGAAGTAATTCAAGCTGGGGTTGTTCCGCGATTCGTTGAGTTCCTTGTCAGGGAGGATTATCCACAACTTCAGTTTGAGGCTGCTTGGGCTCTTACAAACATAGCGTCAGGAACATCGGACAACACCAGGGTGGTGATTGATCACGGGGCAGTCCCAATATTCGTGAAGCTTCTTGCTTCGCCGAGTGATGATGTTAGAGAGCAGGCTGTTTGGGCATTGGGAAATGTTGCTGGTGATTCTCCAAGATGTCGTGATCTAGTCCTCAGCAGTGGCGCCTTGATGCCGTTGCTGGCTCAGTTGAATGAGCATGCAAAGCTTTCAATGCTGAGAAATGCCACCTGGACACTGTCGAACTTTTGCAGGGGCAAGCCGCAGCCTCAGTTTGATCAGGTGAAGCCAGCTCTTCCAGCCCTTGAGCGTTTAGTTCATTCCAATGATGAAGAAGTCTTGACAGATGCCTGCTGGGCACTCTCATATCTCTCGGATGGTACAAATGACAAAATTCAAGCAGTCATCGAGGCAGGTGTCTGCCCGCGACTTGTGCAGCTTCTCTTACATCCATCTCCTGCGGTTCTCATTCCTGCACTTCGCACTGTTGGTAATATTGTGACAGGAGATGATCTTCAGACTCAGTGTATAATCACCAATGGTGCACTTCCATGCCTTCTGAGCCTCTTGACACATAATCATAAGAAGAGCATCAAGAAAGAAGCTTGCTGGACTATCTCAAACATTACAGCTGGAAACAGGGAACAGATACAGTACGTAATTGAAGCTGGTTTGATTGGCCCTCTTGTCAATTTGCTCCAAACTGCTGAGTTTGAGATCAAGAAAGAGGCTGCTTGGGCAATTTCGAATGCTACTTCTGGTGGAACTCATGAGCAAATTAAGTGCGTAATTCACACATTATTATTATTATTATTATTATTATTTTTTTTTTTTTTTAAACCCTACTTCCTAGTAGTAGTAGCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm Arm_3 IBB

Protein Analysis

434

Amino Acids

48.31

Weight (kDa)

7.6

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBB PF01749 12 - 94 4.8e-23 Importin beta binding domain
Arm PF00514 105 - 145 2.9e-10 Armadillo/beta-catenin-like repeat
HEAT_EZ PF13513 130 - 185 3.5e-09 HEAT-like repeat
Arm PF00514 148 - 186 1.6e-12 Armadillo/beta-catenin-like repeat
HEAT_2 PF13646 161 - 267 1e-06 HEAT repeats
Arm PF00514 189 - 230 2.1e-07 Armadillo/beta-catenin-like repeat
Arm PF00514 243 - 271 2.9e-07 Armadillo/beta-catenin-like repeat
ARM_ARMC5 PF24768 252 - 396 2.3e-06 ARMC5
Arm PF00514 274 - 312 9e-10 Armadillo/beta-catenin-like repeat
Arm PF00514 316 - 356 7.2e-10 Armadillo/beta-catenin-like repeat
Arm PF00514 358 - 397 1.2e-12 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32880 AT3G06720 AT3G06720 AT4G16143 AT4G16143
fragaria_vesca FvH4_4g19270 FvH4_4g19270
malus_domestica MD13G1158900.v1.1 MD16G1159100.v1.1
prunus_persica Prupe.1G125900_v2.0.a1
pyrus_communis pycom16g13410
rosa_chinensis RchiOBHm_Chr4g0424261
rosa_laevigata RLG00000007492
rosa_multiflora Rmu_sc0006403.1_g000001
rosa_roxburghii Rroxscaffold_5G00366200
rosa_rugosa Rorug04G0194700 Rorug04G0194800
rosa_samantha Rh4AG252100 Rh4BG257500 Rh4CG268200 Rh4DG251900
rosa_wichuraiana Rw4G021740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 839
AasI GACNNNNNNGTC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 839
AccB1I GGYRCC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 220
AccII CGCG 2 cut(s) 355, 862
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 6 cut(s) 34, 56, 353, 698, 860, 896
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 828
AcuI CTGAAG 2 cut(s) 380, 935
AcyI GRCGYC 2 cut(s) 63, 600
AfaI GTAC 3 cut(s) 47, 817, 1091
AfiI CCNNNNNNNGG 4 cut(s) 49, 88, 243, 376
AgeI ACCGGT 1 cut(s) 42
AgsI TTSAA 6 cut(s) 161, 338, 628, 648, 833, 1100
AjnI CCWGG 3 cut(s) 20, 452, 665
AleI CACNNNNGTG 1 cut(s) 455
Alw21I GWGCWC 2 cut(s) 262, 982
Alw44I GTGCAC 1 cut(s) 978
AlwI GGATC 1 cut(s) 100
Ama87I CYCGRG 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 4 cut(s) 11, 73, 177, 1114
ApaLI GTGCAC 1 cut(s) 978
ApeKI GCWGC 5 cut(s) 265, 407, 700, 871, 1166
ApoI RAATTY 1 cut(s) 828
ArsI GACNNNNNNTTYG 2 cut(s) 416, 448
AsiGI ACCGGT 1 cut(s) 42
Asp700I GAANNNNTTC 2 cut(s) 156, 333
AspLEI GCGC 2 cut(s) 147, 602
AspS9I GGNCC 4 cut(s) 31, 73, 246, 1115
AsuC2I CCSGG 3 cut(s) 149, 176, 238
AsuHPI GGTGA 4 cut(s) 472, 572, 730, 961
AsuII TTCGAA 1 cut(s) 1181
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 2 cut(s) 31, 246
BaeGI GKGCMC 2 cut(s) 796, 982
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 2 cut(s) 262, 982
BbvCI CCTCAGC 1 cut(s) 590
BbvI GCAGC 5 cut(s) 277, 394, 712, 883, 1153
BccI CCATC 3 cut(s) 223, 806, 895
BceAI ACGGC 2 cut(s) 60, 595
BciT130I CCWGG 3 cut(s) 22, 454, 667
BclI TGATCA 2 cut(s) 466, 712
BcnI CCSGG 3 cut(s) 149, 176, 238
BfaI CTAG 2 cut(s) 584, 1286
BfmI CTRYAG 2 cut(s) 263, 303
BfoI RGCGCY 2 cut(s) 148, 603
BfuAI ACCTGC 1 cut(s) 839
BglI GCCNNNNNGGC 1 cut(s) 791
BisI GCNGC 6 cut(s) 266, 408, 698, 701, 872, 1167
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 6 cut(s) 267, 409, 699, 702, 873, 1168
Bme1390I CCNGG 6 cut(s) 22, 149, 176, 238, 454, 667
Bme18I GGWCC 2 cut(s) 31, 246
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 4 cut(s) 31, 73, 246, 1115
BmiI GGNNCC 2 cut(s) 41, 601
BmrFI CCNGG 6 cut(s) 22, 149, 176, 238, 454, 667
BmsI GCATC 3 cut(s) 597, 772, 1035
BoxI GACNNNNGTC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 2 cut(s) 8, 590
Bpu1102I GCTNAGC 1 cut(s) 165
Bpu14I TTCGAA 1 cut(s) 1181
BpuEI CTTGAG 1 cut(s) 761
BpuMI CCSGG 3 cut(s) 149, 176, 238
BsaAI YACGTR 1 cut(s) 1093
BsaHI GRCGYC 2 cut(s) 63, 600
BsaJI CCNNGG 3 cut(s) 66, 237, 453
BsaWI WCCGGW 2 cut(s) 42, 108
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 88, 243, 376
Bse118I RCCGGY 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 3 cut(s) 22, 454, 667
BseDI CCNNGG 3 cut(s) 66, 237, 453
BseGI GGATG 2 cut(s) 817, 883
BseLI CCNNNNNNNGG 4 cut(s) 49, 88, 243, 376
BseRI GAGGAG 2 cut(s) 83, 140
BseSI GKGCMC 2 cut(s) 796, 982
BseXI GCAGC 5 cut(s) 277, 394, 712, 883, 1153
BseYI CCCAGC 2 cut(s) 341, 789
BsgI GTGCAG 2 cut(s) 890, 894
Bsh1236I CGCG 2 cut(s) 355, 862
BshFI GGCC 4 cut(s) 13, 75, 179, 1116
BshNI GGYRCC 1 cut(s) 599
BshTI ACCGGT 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 262, 982
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 7 cut(s) 37, 43, 82, 109, 148, 176, 237
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 4 cut(s) 49, 88, 243, 376
BsmFI GGGAC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 1189
BsnI GGCC 4 cut(s) 13, 75, 179, 1116
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 1181
Bsp1286I GDGCHC 4 cut(s) 262, 418, 796, 982
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 6 cut(s) 34, 56, 353, 698, 860, 896
BspANI GGCC 4 cut(s) 13, 75, 179, 1116
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 2 cut(s) 355, 862
BspHI TCATGA 1 cut(s) 1204
BspLI GGNNCC 2 cut(s) 41, 601
BspMAI CTGCAG 1 cut(s) 267
BspMI ACCTGC 1 cut(s) 839
BspPI GGATC 1 cut(s) 100
BspQI GCTCTTC 3 cut(s) 107, 735, 1016
BspT104I TTCGAA 1 cut(s) 1181
BspT107I GGYRCC 1 cut(s) 599
BsrFI RCCGGY 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 3 cut(s) 66, 237, 453
BssMI GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
BssNI GRCGYC 2 cut(s) 63, 600
Bst2UI CCWGG 3 cut(s) 22, 454, 667
Bst4CI ACNGT 4 cut(s) 225, 675, 922, 1089
Bst6I CTCTTC 3 cut(s) 107, 735, 1016
BstACI GRCGYC 2 cut(s) 63, 600
BstBAI YACGTR 1 cut(s) 1093
BstBI TTCGAA 1 cut(s) 1181
BstC8I GCNNGC 8 cut(s) 531, 618, 636, 695, 726, 787, 860, 1042
BstF5I GGATG 2 cut(s) 817, 883
BstFNI CGCG 2 cut(s) 355, 862
BstH2I RGCGCY 2 cut(s) 148, 603
BstHHI GCGC 2 cut(s) 147, 602
BstKTI GATC 6 cut(s) 108, 469, 583, 715, 949, 1155
BstMBI GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
BstNI CCWGG 3 cut(s) 22, 454, 667
BstNSI RCATGY 1 cut(s) 638
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 6 cut(s) 20, 147, 174, 236, 452, 665
BstSFI CTRYAG 2 cut(s) 263, 303
BstSLI GKGCMC 2 cut(s) 796, 982
BstSNI TACGTA 1 cut(s) 1093
BstUI CGCG 2 cut(s) 355, 862
BstV1I GCAGC 5 cut(s) 277, 394, 712, 883, 1153
BstV2I GAAGAC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 4 cut(s) 13, 75, 179, 1116
BtsCI GGATG 2 cut(s) 817, 883
BtsI GCAGTG 1 cut(s) 601
BtsIMutI CAGTG 4 cut(s) 601, 671, 918, 965
BveI ACCTGC 1 cut(s) 839
Cac8I GCNNGC 8 cut(s) 531, 618, 636, 695, 726, 787, 860, 1042
CciI TCATGA 1 cut(s) 1204
CfoI GCGC 2 cut(s) 147, 602
Cfr10I RCCGGY 1 cut(s) 42
Cfr13I GGNCC 4 cut(s) 31, 73, 246, 1115
CseI GACGC 2 cut(s) 71, 420
Csp6I GTAC 3 cut(s) 46, 816, 1090
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 4 cut(s) 97, 635, 987, 1205
CviQI GTAC 3 cut(s) 46, 816, 1090
DinI GGCGCC 1 cut(s) 601
DpnI GATC 6 cut(s) 107, 468, 582, 714, 948, 1154
DpnII GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
DraI TTTAAA 1 cut(s) 1273
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 3 cut(s) 107, 735, 1016
EarI CTCTTC 3 cut(s) 107, 735, 1016
EciI GGCGGA 1 cut(s) 23
Eco105I TACGTA 1 cut(s) 1093
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 2 cut(s) 31, 246
Eco57I CTGAAG 2 cut(s) 380, 935
Eco88I CYCGRG 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 20, 452, 665
EcoT38I GRGCYC 1 cut(s) 418
EgeI GGCGCC 1 cut(s) 601
EheI GGCGCC 1 cut(s) 601
FaeI CATG 4 cut(s) 100, 638, 990, 1208
FaqI GGGAC 1 cut(s) 464
FatI CATG 4 cut(s) 96, 634, 986, 1204
FauI CCCGC 1 cut(s) 867
FbaI TGATCA 2 cut(s) 466, 712
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 6 cut(s) 266, 408, 698, 701, 872, 1167
FokI GGATG 2 cut(s) 824, 870
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 6 cut(s) 266, 408, 698, 701, 872, 1167
FspBI CTAG 2 cut(s) 584, 1286
GlaI GCGC 2 cut(s) 146, 601
GluI GCNGC 6 cut(s) 266, 408, 698, 701, 872, 1167
GsaI CCCAGC 2 cut(s) 345, 793
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 2 cut(s) 148, 603
HaeIII GGCC 4 cut(s) 13, 75, 179, 1116
HapII CCGG 7 cut(s) 37, 43, 82, 109, 148, 176, 237
HgaI GACGC 2 cut(s) 71, 420
HhaI GCGC 2 cut(s) 147, 602
Hin1I GRCGYC 2 cut(s) 63, 600
Hin1II CATG 4 cut(s) 100, 638, 990, 1208
Hin6I GCGC 2 cut(s) 145, 600
HinP1I GCGC 2 cut(s) 145, 600
HindIII AAGCTT 3 cut(s) 494, 641, 1038
HinfI GANTC 4 cut(s) 217, 357, 563, 955
HpaII CCGG 7 cut(s) 37, 43, 82, 109, 148, 176, 237
HphI GGTGA 4 cut(s) 472, 572, 730, 961
Hpy166II GTNNAC 3 cut(s) 61, 221, 980
Hpy188I TCNGA 6 cut(s) 253, 291, 445, 811, 954, 996
Hpy8I GTNNAC 3 cut(s) 61, 221, 980
Hpy99I CGWCG 2 cut(s) 81, 229
HpyAV CCTTC 2 cut(s) 146, 1001
HpyCH4III ACNGT 4 cut(s) 225, 675, 922, 1089
HpyCH4IV ACGT 1 cut(s) 1092
HpyCH4V TGCA 6 cut(s) 265, 638, 687, 871, 911, 980
HpySE526I ACGT 1 cut(s) 1092
Hsp92I GRCGYC 2 cut(s) 63, 600
Hsp92II CATG 4 cut(s) 100, 638, 990, 1208
HspAI GCGC 2 cut(s) 145, 600
KasI GGCGCC 1 cut(s) 599
Kpn2I TCCGGA 1 cut(s) 108
Ksp22I TGATCA 2 cut(s) 466, 712
Kzo9I GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
LguI GCTCTTC 3 cut(s) 107, 735, 1016
LmnI GCTCC 1 cut(s) 1137
Lsp1109I GCAGC 5 cut(s) 277, 394, 712, 883, 1153
LweI GCATC 3 cut(s) 597, 772, 1035
MaeI CTAG 2 cut(s) 584, 1286
MaeII ACGT 1 cut(s) 1092
MaeIII GTNAC 1 cut(s) 934
MalI GATC 6 cut(s) 107, 468, 582, 714, 948, 1154
MboI GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
MboII GAAGA 7 cut(s) 124, 149, 217, 722, 779, 941, 1033
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 4 cut(s) 262, 418, 796, 982
MluCI AATT 9 cut(s) 170, 321, 333, 828, 1095, 1126, 1176, 1212, 1224
Mly113I GGCGCC 1 cut(s) 600
MlyI GAGTC 2 cut(s) 226, 949
MmeI TCCRAC 1 cut(s) 192
MroI TCCGGA 1 cut(s) 108
MroXI GAANNNNTTC 2 cut(s) 156, 333
MseI TTAA 4 cut(s) 137, 1215, 1272, 1303
MslI CAYNNNNRTG 3 cut(s) 455, 759, 985
MspA1I CMGCKG 2 cut(s) 268, 1067
MspI CCGG 7 cut(s) 37, 43, 82, 109, 148, 176, 237
MspR9I CCNGG 6 cut(s) 22, 149, 176, 238, 454, 667
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 1189
MvaI CCWGG 3 cut(s) 22, 454, 667
MvnI CGCG 2 cut(s) 355, 862
NarI GGCGCC 1 cut(s) 600
NciI CCSGG 3 cut(s) 149, 176, 238
NdeII GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
NlaIII CATG 4 cut(s) 100, 638, 990, 1208
NlaIV GGNNCC 2 cut(s) 41, 601
NmeAIII GCCGAG 2 cut(s) 91, 534
NmuCI GTSAC 1 cut(s) 934
NspI RCATGY 1 cut(s) 638
NspV TTCGAA 1 cut(s) 1181
OliI CACNNNNGTG 1 cut(s) 455
PaeI GCATGC 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 200
PagI TCATGA 1 cut(s) 1204
PaqCI CACCTGC 1 cut(s) 839
PciSI GCTCTTC 3 cut(s) 107, 735, 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 1189
PdmI GAANNNNTTC 2 cut(s) 156, 333
PfeI GAWTC 2 cut(s) 357, 563
PflFI GACNNNGTC 1 cut(s) 673
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 6 cut(s) 267, 409, 699, 702, 873, 1168
PleI GAGTC 2 cut(s) 225, 949
PluTI GGCGCC 1 cut(s) 603
PpsI GAGTC 2 cut(s) 225, 949
Ppu21I YACGTR 1 cut(s) 1093
PshAI GACNNNNGTC 1 cut(s) 29
Psp6I CCWGG 3 cut(s) 20, 452, 665
PspFI CCCAGC 2 cut(s) 341, 789
PspGI CCWGG 3 cut(s) 20, 452, 665
PspN4I GGNNCC 2 cut(s) 41, 601
PspPI GGNCC 4 cut(s) 31, 73, 246, 1115
PstI CTGCAG 1 cut(s) 267
PsuI RGATCY 1 cut(s) 105
PsyI GACNNNGTC 1 cut(s) 673
PvuII CAGCTG 2 cut(s) 268, 1067
RsaI GTAC 3 cut(s) 47, 817, 1091
RsaNI GTAC 3 cut(s) 46, 816, 1090
RseI CAYNNNNRTG 3 cut(s) 455, 759, 985
SapI GCTCTTC 3 cut(s) 107, 735, 1016
SaqAI TTAA 4 cut(s) 137, 1215, 1272, 1303
SatI GCNGC 6 cut(s) 266, 408, 698, 701, 872, 1167
Sau3AI GATC 6 cut(s) 105, 466, 580, 712, 946, 1152
Sau96I GGNCC 4 cut(s) 31, 73, 246, 1115
SchI GAGTC 2 cut(s) 226, 949
ScrFI CCNGG 6 cut(s) 22, 149, 176, 238, 454, 667
SduI GDGCHC 4 cut(s) 262, 418, 796, 982
SfaNI GCATC 3 cut(s) 597, 772, 1035
SfcI CTRYAG 2 cut(s) 263, 303
SfoI GGCGCC 1 cut(s) 601
Sfr274I CTCGAG 1 cut(s) 200
SfuI TTCGAA 1 cut(s) 1181
SinI GGWCC 2 cut(s) 31, 246
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 3 cut(s) 455, 759, 985
SmlI CTYRAG 2 cut(s) 200, 740
SmoI CTYRAG 2 cut(s) 200, 740
SnaBI TACGTA 1 cut(s) 1093
SphI GCATGC 1 cut(s) 638
Sse9I AATT 9 cut(s) 170, 321, 333, 828, 1095, 1126, 1176, 1212, 1224
SsiI CCGC 6 cut(s) 34, 56, 353, 698, 860, 896
SspDI GGCGCC 1 cut(s) 599
SspI AATATT 2 cut(s) 486, 931
SspMI CTAG 2 cut(s) 584, 1286
StyD4I CCNGG 6 cut(s) 20, 147, 174, 236, 452, 665
TaaI ACNGT 4 cut(s) 225, 675, 922, 1089
TaiI ACGT 1 cut(s) 1095
TaqI TCGA 6 cut(s) 102, 201, 227, 677, 843, 1181
TasI AATT 9 cut(s) 170, 321, 333, 828, 1095, 1126, 1176, 1212, 1224
TauI GCSGC 1 cut(s) 700
TfiI GAWTC 2 cut(s) 357, 563
Tru1I TTAA 4 cut(s) 137, 1215, 1272, 1303
Tru9I TTAA 4 cut(s) 137, 1215, 1272, 1303
TscAI CASTG 4 cut(s) 601, 678, 925, 965
TseFI GTSAC 1 cut(s) 934
TseI GCWGC 5 cut(s) 265, 407, 700, 871, 1166
Tsp45I GTSAC 1 cut(s) 934
TspDTI ATGAA 2 cut(s) 743, 780
TspRI CASTG 4 cut(s) 601, 678, 925, 965
Tth111I GACNNNGTC 1 cut(s) 673
VneI GTGCAC 1 cut(s) 978
VpaK11BI GGWCC 2 cut(s) 31, 246
XapI RAATTY 1 cut(s) 828
XceI RCATGY 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 220
XmnI GAANNNNTTC 2 cut(s) 156, 333
XspI CTAG 2 cut(s) 584, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.