AT1G36050

Endoplasmic reticulum-Golgi intermediate compartment protein 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011866
Physical Location & Seq
Forward (+)
13450089 .. 13453683
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36050.2

Sequence Viewer

Length: 1470 bp
ATGGCCGGGATCTTGAATAAATTGCGGAATCTAGATGCATATCCTAAGATCAATGAAGATTTTTACAGCCGTACATTATCCGGCGGAGTTATCACTCTCCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATACAGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACTTTGATATTACGTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAGTGGAGAGCTTCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGGCAACACTATAGAGGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAACCCACTGCAGAAACATGGTGGCAGGCTGGGACATAATGAGACTTACTGTGGTTCTTGCTATGGGGCTGAAGCGGAAGAGCATGACTGCTGCAATTCGTGTGAGGATGTTCGTGAAGCATATAGAAAGAAAGGTTGGGGGGTTACTAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACAAAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATATATGGGTTCTTGGAGGTCAATAAGGTGGCTGGGAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGCGTGCATGTTCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAACATAAGTCACAAGATCAATAGACTTACTTATGGAGACTACTTTCCTGGCGTCGTTAACCCTCTTGACAAAGTCGAGTGGAGTCAAGACACACCTAATGCTATGTACCAATACTTTATCAAGGTTGTACCAACAGTATACACAGATATCAGAGGACACACAATTCAATCGAATCAGTTCTCAGTGACCGAACATGTAAAGAGCTCAGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAATCAAGGTAACATTTACGGAGGAACACATATCATTCTTGCACTTCTTGACGAATGTTTGCGCCATAGTTGGAGGTGTCTTCACAGTGTCCGGGATAATAGACGCGTTTATATACCATGGTCAAAAAGCTATCAAGAAGAAGATGGAAATTGTGTATGGATTCAATGAATGGAAGAAAAAGAAGCAAAACAGTCTCCATAATAAACGCTTAGAGTACAGAGAATCATTATTAGTATTGACGAGAAAGTTGTTATTAGTGAATATATTAATTCCGATTGCAATATATGTTAGGTCTCGGTTAATACTCGGATTCGAAGAACTGAACCAGAACCTATCCGAAATATCGGTTTGGGTCTGTTTTGGATCCTCTAGAACATTTGATTGGGTCTTGTCTTCATATATTTTCGGTATTGGTTCAAAAAGGATAATACCTGATAAATTAACGGGAACTCGAATATATTTGAAGCCTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

489

Amino Acids

55.48

Weight (kDa)

7.26

Isoelectric Point (pI)

38.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 8 - 97 1.2e-31 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 149 - 366 1.4e-87 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36050 AT1G36050
fragaria_vesca FvH4_5g37810 FvH4_5g37810 FvH4_5g37810
malus_domestica MD08G1180300.v1.1 MD15G1365600.v1.1
prunus_persica Prupe.1G513700_v2.0.a1
pyrus_communis pycom08g15430 pycom15g32800
rosa_chinensis RchiOBHm_Chr7g0239691
rosa_laevigata RLG00000000741
rosa_multiflora Rmu_sc0000063.1_g000019
rosa_roxburghii Rroxscaffold_3G00220830
rosa_samantha Rh7AG482900 Rh7BG455600 Rh7CG500300 Rh7DG468500
rosa_wichuraiana Rw7G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 935
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 1100
AciI CCGC 3 cut(s) 25, 84, 461
AclWI GGATC 3 cut(s) 17, 1353, 1366
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 4 cut(s) 73, 839, 861, 1211
AflIII ACRYGT 2 cut(s) 925, 1098
AgsI TTSAA 7 cut(s) 16, 192, 386, 899, 1159, 1413, 1459
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 3 cut(s) 664, 778, 964
AjuI GAANNNNNNNTTGG 4 cut(s) 505, 537, 1360, 1392
AluBI AGCT 6 cut(s) 139, 175, 286, 675, 936, 1124
AluI AGCT 6 cut(s) 139, 175, 286, 675, 936, 1124
Alw21I GWGCWC 2 cut(s) 141, 938
Alw26I GTCTC 6 cut(s) 161, 194, 422, 762, 1193, 1293
AlwI GGATC 3 cut(s) 17, 1353, 1366
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 477
AseI ATTAAT 1 cut(s) 1262
Asp700I GAANNNNTTC 2 cut(s) 570, 908
AspLEI GCGC 2 cut(s) 374, 1058
AsuC2I CCSGG 2 cut(s) 7, 1087
AsuHPI GGTGA 2 cut(s) 154, 611
AsuII TTCGAA 1 cut(s) 1308
BamHI GGATCC 1 cut(s) 1358
BanII GRGCYC 2 cut(s) 141, 938
BarI GAAGNNNNNNTAC 2 cut(s) 558, 590
BbsI GAAGAC 2 cut(s) 1066, 1380
Bbv12I GWGCWC 2 cut(s) 141, 938
BbvI GCAGC 1 cut(s) 464
BccI CCATC 1 cut(s) 1132
BceAI ACGGC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 692, 726
BciT130I CCWGG 3 cut(s) 666, 780, 966
BcnI CCSGG 2 cut(s) 7, 1087
BcoDI GTCTC 6 cut(s) 161, 194, 422, 762, 1193, 1293
BfaI CTAG 3 cut(s) 32, 239, 1365
BfmI CTRYAG 2 cut(s) 345, 395
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 935
BisI GCNGC 1 cut(s) 478
BlsI GCNGC 1 cut(s) 479
Bme1390I CCNGG 5 cut(s) 7, 666, 780, 966, 1087
BmgBI CACGTC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 1360
BmrFI CCNGG 5 cut(s) 7, 666, 780, 966, 1087
BmsI GCATC 3 cut(s) 25, 219, 253
BpiI GAAGAC 2 cut(s) 1066, 1380
BpmI CTGGAG 1 cut(s) 987
Bpu14I TTCGAA 1 cut(s) 1308
BpuMI CCSGG 2 cut(s) 7, 1087
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 783
BsaI GGTCTC 1 cut(s) 1293
BsaJI CCNNGG 2 cut(s) 665, 1111
Bse1I ACTGG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 3 cut(s) 666, 780, 966
BseDI CCNNGG 2 cut(s) 665, 1111
BseGI GGATG 2 cut(s) 499, 595
BseJI GATNNNNATC 1 cut(s) 39
BseMII CTCAG 2 cut(s) 927, 951
BseNI ACTGG 1 cut(s) 553
BseRI GAGGAG 2 cut(s) 89, 94
BseXI GCAGC 1 cut(s) 464
BseYI CCCAGC 2 cut(s) 415, 644
Bsh1236I CGCG 1 cut(s) 1100
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 2 cut(s) 141, 938
BsiSI CCGG 3 cut(s) 6, 81, 1086
BslFI GGGAC 1 cut(s) 432
BsmAI GTCTC 6 cut(s) 161, 194, 422, 762, 1193, 1293
BsmBI CGTCTC 2 cut(s) 161, 194
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 1293
Bsp119I TTCGAA 1 cut(s) 1308
Bsp1286I GDGCHC 2 cut(s) 141, 938
Bsp143I GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
Bsp19I CCATGG 1 cut(s) 1111
BspACI CCGC 3 cut(s) 25, 84, 461
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 926, 950
BspFNI CGCG 1 cut(s) 1100
BspLI GGNNCC 1 cut(s) 1360
BspMAI CTGCAG 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 935
BspPI GGATC 3 cut(s) 17, 1353, 1366
BspQI GCTCTTC 1 cut(s) 459
BspT104I TTCGAA 1 cut(s) 1308
BspTNI GGTCTC 1 cut(s) 1293
BsrI ACTGG 1 cut(s) 553
BssECI CCNNGG 2 cut(s) 665, 1111
BssMI GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
BssNAI GTATAC 1 cut(s) 871
BssNI GRCGYC 1 cut(s) 783
BssT1I CCWWGG 1 cut(s) 1111
Bst1107I GTATAC 1 cut(s) 871
Bst2UI CCWGG 3 cut(s) 666, 780, 966
Bst4CI ACNGT 6 cut(s) 160, 437, 728, 868, 1081, 1187
Bst6I CTCTTC 2 cut(s) 131, 459
BstACI GRCGYC 1 cut(s) 783
BstBI TTCGAA 1 cut(s) 1308
BstC8I GCNNGC 2 cut(s) 413, 692
BstDEI CTNAG 6 cut(s) 45, 254, 378, 913, 937, 1204
BstDSI CCRYGG 1 cut(s) 1111
BstF5I GGATG 2 cut(s) 499, 595
BstFNI CGCG 1 cut(s) 1100
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 2 cut(s) 374, 1058
BstKTI GATC 6 cut(s) 12, 51, 706, 750, 988, 1361
BstMAI GTCTC 6 cut(s) 161, 194, 422, 762, 1193, 1293
BstMBI GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
BstNI CCWGG 3 cut(s) 666, 780, 966
BstNSI RCATGY 3 cut(s) 246, 698, 929
BstSCI CCNGG 5 cut(s) 5, 664, 778, 964, 1085
BstSFI CTRYAG 2 cut(s) 345, 395
BstUI CGCG 1 cut(s) 1100
BstV1I GCAGC 1 cut(s) 464
BstV2I GAAGAC 2 cut(s) 1066, 1380
BstX2I RGATCY 2 cut(s) 9, 1358
BstYI RGATCY 2 cut(s) 9, 1358
BstZ17I GTATAC 1 cut(s) 871
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 1111
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 2 cut(s) 499, 595
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 4 cut(s) 392, 560, 921, 1086
BveI ACCTGC 1 cut(s) 935
Cac8I GCNNGC 2 cut(s) 413, 692
CfoI GCGC 2 cut(s) 374, 1058
CseI GACGC 2 cut(s) 772, 1106
Csp6I GTAC 4 cut(s) 72, 838, 860, 1210
CviAII CATG 7 cut(s) 243, 305, 404, 470, 695, 926, 1112
CviQI GTAC 4 cut(s) 72, 838, 860, 1210
DdeI CTNAG 6 cut(s) 45, 254, 378, 913, 937, 1204
DpnI GATC 6 cut(s) 11, 50, 705, 749, 987, 1360
DpnII GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 131, 459
EarI CTCTTC 2 cut(s) 131, 459
EciI GGCGGA 1 cut(s) 99
Ecl136II GAGCTC 2 cut(s) 139, 936
Eco130I CCWWGG 1 cut(s) 1111
Eco24I GRGCYC 2 cut(s) 141, 938
Eco31I GGTCTC 1 cut(s) 1293
Eco32I GATATC 2 cut(s) 310, 880
Eco53kI GAGCTC 2 cut(s) 139, 936
Eco57I CTGAAG 1 cut(s) 477
EcoICRI GAGCTC 2 cut(s) 139, 936
EcoRII CCWGG 3 cut(s) 664, 778, 964
EcoRV GATATC 2 cut(s) 310, 880
EcoT14I CCWWGG 1 cut(s) 1111
EcoT22I ATGCAT 1 cut(s) 40
EcoT38I GRGCYC 2 cut(s) 141, 938
ErhI CCWWGG 1 cut(s) 1111
Esp3I CGTCTC 2 cut(s) 161, 194
FaeI CATG 7 cut(s) 246, 308, 407, 473, 698, 929, 1115
FaqI GGGAC 1 cut(s) 432
FatI CATG 7 cut(s) 242, 304, 403, 469, 694, 925, 1111
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 1 cut(s) 478
FokI GGATG 2 cut(s) 506, 602
FriOI GRGCYC 2 cut(s) 141, 938
Fsp4HI GCNGC 1 cut(s) 478
FspBI CTAG 3 cut(s) 32, 239, 1365
GlaI GCGC 2 cut(s) 373, 1057
GluI GCNGC 1 cut(s) 478
GsaI CCCAGC 2 cut(s) 419, 648
GsuI CTGGAG 1 cut(s) 987
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 6, 81, 1086
HgaI GACGC 2 cut(s) 772, 1106
HhaI GCGC 2 cut(s) 374, 1058
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 7 cut(s) 246, 308, 407, 473, 698, 929, 1115
Hin6I GCGC 2 cut(s) 372, 1056
HinP1I GCGC 2 cut(s) 372, 1056
HincII GTYRAC 2 cut(s) 790, 950
HindII GTYRAC 2 cut(s) 790, 950
HindIII AAGCTT 2 cut(s) 173, 673
HinfI GANTC 8 cut(s) 28, 250, 329, 814, 904, 1155, 1217, 1305
HpaI GTTAAC 1 cut(s) 790
HpaII CCGG 3 cut(s) 6, 81, 1086
HphI GGTGA 2 cut(s) 154, 611
Hpy166II GTNNAC 5 cut(s) 560, 700, 790, 871, 950
Hpy188I TCNGA 7 cut(s) 136, 720, 884, 940, 1269, 1304, 1333
Hpy8I GTNNAC 5 cut(s) 560, 700, 790, 871, 950
Hpy99I CGWCG 1 cut(s) 788
HpyAV CCTTC 4 cut(s) 131, 560, 590, 596
HpyCH4III ACNGT 6 cut(s) 160, 437, 728, 868, 1081, 1187
HpyCH4IV ACGT 3 cut(s) 203, 227, 297
HpyCH4V TGCA 7 cut(s) 38, 397, 480, 694, 955, 1036, 1274
HpyF3I CTNAG 6 cut(s) 45, 254, 378, 913, 937, 1204
HpySE526I ACGT 3 cut(s) 203, 227, 297
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 7 cut(s) 246, 308, 407, 473, 698, 929, 1115
HspAI GCGC 2 cut(s) 372, 1056
KspAI GTTAAC 1 cut(s) 790
Kzo9I GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 2 cut(s) 144, 667
Lsp1109I GCAGC 1 cut(s) 464
LweI GCATC 3 cut(s) 25, 219, 253
MaeI CTAG 3 cut(s) 32, 239, 1365
MaeII ACGT 3 cut(s) 203, 227, 297
MaeIII GTNAC 6 cut(s) 160, 204, 529, 740, 916, 1003
MalI GATC 6 cut(s) 11, 50, 705, 749, 987, 1360
MboI GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
MflI RGATCY 2 cut(s) 9, 1358
MhlI GDGCHC 2 cut(s) 141, 938
MluCI AATT 6 cut(s) 20, 481, 894, 1143, 1263, 1433
MluI ACGCGT 1 cut(s) 1098
MlyI GAGTC 1 cut(s) 823
MmeI TCCRAC 1 cut(s) 1045
Mph1103I ATGCAT 1 cut(s) 40
MroXI GAANNNNTTC 2 cut(s) 570, 908
MseI TTAA 5 cut(s) 732, 789, 1262, 1295, 1436
MspI CCGG 3 cut(s) 6, 81, 1086
MspR9I CCNGG 5 cut(s) 7, 666, 780, 966, 1087
MvaI CCWGG 3 cut(s) 666, 780, 966
MvnI CGCG 1 cut(s) 1100
NciI CCSGG 2 cut(s) 7, 1087
NcoI CCATGG 1 cut(s) 1111
NdeII GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
NlaIII CATG 7 cut(s) 246, 308, 407, 473, 698, 929, 1115
NlaIV GGNNCC 1 cut(s) 1360
NmuCI GTSAC 3 cut(s) 160, 740, 916
NsiI ATGCAT 1 cut(s) 40
NspI RCATGY 3 cut(s) 246, 698, 929
NspV TTCGAA 1 cut(s) 1308
PciI ACATGT 1 cut(s) 925
PciSI GCTCTTC 1 cut(s) 459
PdmI GAANNNNTTC 2 cut(s) 570, 908
PfeI GAWTC 7 cut(s) 28, 250, 329, 904, 1155, 1217, 1305
PflFI GACNNNGTC 1 cut(s) 803
PfoI TCCNGGA 1 cut(s) 1085
PkrI GCNGC 1 cut(s) 479
PleI GAGTC 1 cut(s) 822
PpsI GAGTC 1 cut(s) 822
PscI ACATGT 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 1262
Psp124BI GAGCTC 2 cut(s) 141, 938
Psp6I CCWGG 3 cut(s) 664, 778, 964
PspFI CCCAGC 2 cut(s) 415, 644
PspGI CCWGG 3 cut(s) 664, 778, 964
PspN4I GGNNCC 1 cut(s) 1360
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 2 cut(s) 9, 1358
PsyI GACNNNGTC 1 cut(s) 803
RsaI GTAC 4 cut(s) 73, 839, 861, 1211
RsaNI GTAC 4 cut(s) 72, 838, 860, 1210
SacI GAGCTC 2 cut(s) 141, 938
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 5 cut(s) 732, 789, 1262, 1295, 1436
SatI GCNGC 1 cut(s) 478
Sau3AI GATC 6 cut(s) 9, 48, 703, 747, 985, 1358
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 5 cut(s) 7, 666, 780, 966, 1087
SduI GDGCHC 2 cut(s) 141, 938
SfaNI GCATC 3 cut(s) 25, 219, 253
SfcI CTRYAG 2 cut(s) 345, 395
SfuI TTCGAA 1 cut(s) 1308
Sse9I AATT 6 cut(s) 20, 481, 894, 1143, 1263, 1433
SsiI CCGC 3 cut(s) 25, 84, 461
SspMI CTAG 3 cut(s) 32, 239, 1365
SstI GAGCTC 2 cut(s) 141, 938
StyD4I CCNGG 5 cut(s) 5, 664, 778, 964, 1085
StyI CCWWGG 1 cut(s) 1111
TaaI ACNGT 6 cut(s) 160, 437, 728, 868, 1081, 1187
TaiI ACGT 3 cut(s) 206, 230, 300
TaqI TCGA 5 cut(s) 248, 807, 902, 1308, 1447
TaqII GACCGA 1 cut(s) 935
TasI AATT 6 cut(s) 20, 481, 894, 1143, 1263, 1433
TatI WGTACW 1 cut(s) 1209
TfiI GAWTC 7 cut(s) 28, 250, 329, 904, 1155, 1217, 1305
Tru1I TTAA 5 cut(s) 732, 789, 1262, 1295, 1436
Tru9I TTAA 5 cut(s) 732, 789, 1262, 1295, 1436
TscAI CASTG 4 cut(s) 399, 560, 921, 1086
TseFI GTSAC 3 cut(s) 160, 740, 916
TseI GCWGC 1 cut(s) 477
Tsp45I GTSAC 3 cut(s) 160, 740, 916
TspDTI ATGAA 7 cut(s) 69, 143, 278, 606, 668, 1176, 1380
TspGWI ACGGA 4 cut(s) 97, 131, 378, 1028
TspRI CASTG 4 cut(s) 399, 560, 921, 1086
Tth111I GACNNNGTC 1 cut(s) 803
VspI ATTAAT 1 cut(s) 1262
XbaI TCTAGA 2 cut(s) 31, 1364
XceI RCATGY 3 cut(s) 246, 698, 929
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 870
XmnI GAANNNNTTC 2 cut(s) 570, 908
XspI CTAG 3 cut(s) 32, 239, 1365
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.