Rmu_sc0000063.1_g000019

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000063.1
OG0011866
Physical Location & Seq
Forward (+)
92550 .. 98047
5498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000063.1_g000019.1.cds

Sequence Viewer

Length: 1152 bp
atgatgagccgcctccgcaatttggacgcgtaccccaaaatcaacgaagatttctacagccgtaccctctccggcggcgtcatcaccctcgtctcctccatcgttatgctcctgctcttcctctccgagctccagttatatctacatgcagtgacggaaacgaagcttgtggtggatacttcaagaggagaaaccctgcgtatcaatttcgatgtaacctttgctgcgcttccttgttctatactcagtcttgatgccatggacattagtggagagcagcaccttgatgtaaaacatgacattatcaagaaaagaatagactccaatggaaatgttatagaatcaaggccggatggaattggtgcccccaagattgacaagcctttacagagacatggtggcaggcttgagcacaatgagacatactgtggttcttgttatggggcagaagcgaatgatgaggattgttgtaataactgtgaagaggtccgtgaagcttaccgaaagaaaggttgggccatttcaaatccagatttgattgaccagtgcaaaagagaagggtttttgcaaaagattaaagatgaagaaggtgaaggatgcaatatatatgggttcttggaagtcaataaggtggccgggaactttcattttgcacctgggaaaagctttcaacaatcaaatgttcatgtacacgatttgctggcatttcaaaaggatagttttaatataagtcacacaatcaacagattgtcttttggagactatttccctggtgttgtcaatcctcttgatggggtgcactggacgcaggacaaccccagtgggatgtatcaatattttatcaaggttgttcctactgtgtacacagatgtcagggggcacactatccagtcaaatcagttctctgtcactgaacattataggggtacagaaataggcaaccttcagtttcttcctggaatatttttcttctatgacctttccccgataaaggtaacttttacggaggagcatatttctttcttacacttcctgacaaatgtgtgtgccattgttggaggtgtttttaccgtgtctggaatattggattcgtttatataccatggtcagaaggcaattaaaaagaagatggaaattggcaaattcagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

383

Amino Acids

43.16

Weight (kDa)

5.83

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36050 AT1G36050
fragaria_vesca FvH4_5g37810 FvH4_5g37810 FvH4_5g37810
malus_domestica MD08G1180300.v1.1 MD15G1365600.v1.1
prunus_persica Prupe.1G513700_v2.0.a1
pyrus_communis pycom08g15430 pycom15g32800
rosa_chinensis RchiOBHm_Chr7g0239691
rosa_laevigata RLG00000000741
rosa_multiflora Rmu_sc0000063.1_g000019
rosa_roxburghii Rroxscaffold_3G00220830
rosa_samantha Rh7AG482900 Rh7BG455600 Rh7CG500300 Rh7DG468500
rosa_wichuraiana Rw7G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccII CGCG 1 cut(s) 29
AciI CCGC 3 cut(s) 10, 16, 75
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 1 cut(s) 1142
AcuI CTGAAG 1 cut(s) 929
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 5 cut(s) 32, 64, 690, 863, 928
AfiI CCNNNNNNNGG 3 cut(s) 22, 791, 991
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 4 cut(s) 183, 525, 671, 710
AjnI CCWGG 3 cut(s) 655, 769, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AluBI AGCT 4 cut(s) 130, 166, 497, 666
AluI AGCT 4 cut(s) 130, 166, 497, 666
Alw21I GWGCWC 3 cut(s) 132, 414, 801
Alw26I GTCTC 4 cut(s) 97, 385, 413, 753
Alw44I GTGCAC 1 cut(s) 797
AoxI GGCC 3 cut(s) 347, 516, 633
ApaLI GTGCAC 1 cut(s) 797
ApeKI GCWGC 2 cut(s) 224, 277
ApoI RAATTY 1 cut(s) 1142
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 487, 516
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 2 cut(s) 76, 602
AvaII GGWCC 1 cut(s) 487
BaeGI GKGCMC 3 cut(s) 367, 801, 882
BaeI ACNNNNGTAYC 2 cut(s) 46, 79
BanI GGYRCC 1 cut(s) 362
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 3 cut(s) 132, 414, 801
BbvI GCAGC 2 cut(s) 211, 289
BccI CCATC 4 cut(s) 107, 347, 785, 1123
BceAI ACGGC 1 cut(s) 45
BciT130I CCWGG 3 cut(s) 657, 771, 957
BciVI GTATCC 1 cut(s) 169
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 4 cut(s) 97, 385, 413, 753
BfmI CTRYAG 1 cut(s) 55
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 4 cut(s) 10, 76, 225, 278
BlsI GCNGC 4 cut(s) 11, 77, 226, 279
Bme1390I CCNGG 4 cut(s) 637, 657, 771, 957
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 2 cut(s) 487, 516
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 4 cut(s) 637, 657, 771, 957
BmrI ACTGGG 1 cut(s) 813
BmsI GCATC 2 cut(s) 244, 587
BmuI ACTGGG 1 cut(s) 813
BpmI CTGGAG 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 428
BpuMI CCSGG 1 cut(s) 637
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 4 cut(s) 258, 656, 769, 1102
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 791, 991
Bse1I ACTGG 5 cut(s) 133, 544, 806, 819, 889
BseBI CCWGG 3 cut(s) 657, 771, 957
BseDI CCNNGG 4 cut(s) 258, 656, 769, 1102
BseGI GGATG 3 cut(s) 358, 602, 831
BseLI CCNNNNNNNGG 3 cut(s) 22, 791, 991
BseMII CTCAG 1 cut(s) 259
BseNI ACTGG 5 cut(s) 133, 544, 806, 819, 889
BseRI GAGGAG 3 cut(s) 85, 201, 1022
BseSI GKGCMC 3 cut(s) 367, 801, 882
BseXI GCAGC 2 cut(s) 211, 289
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 3 cut(s) 349, 518, 635
BshNI GGYRCC 1 cut(s) 362
BsiHKAI GWGCWC 3 cut(s) 132, 414, 801
BsiSI CCGG 3 cut(s) 72, 350, 636
BslI CCNNNNNNNGG 3 cut(s) 22, 791, 991
BsmAI GTCTC 4 cut(s) 97, 385, 413, 753
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 3 cut(s) 349, 518, 635
Bsp1286I GDGCHC 5 cut(s) 132, 367, 414, 801, 882
Bsp1407I TGTACA 2 cut(s) 688, 861
Bsp19I CCATGG 2 cut(s) 258, 1102
BspACI CCGC 3 cut(s) 10, 16, 75
BspANI GGCC 3 cut(s) 349, 518, 635
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 1 cut(s) 364
BspQI GCTCTTC 1 cut(s) 122
BspT107I GGYRCC 1 cut(s) 362
BsrGI TGTACA 2 cut(s) 688, 861
BsrI ACTGG 5 cut(s) 133, 544, 806, 819, 889
BssECI CCNNGG 4 cut(s) 258, 656, 769, 1102
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 258, 1102
Bst2UI CCWGG 3 cut(s) 657, 771, 957
Bst4CI ACNGT 4 cut(s) 428, 479, 859, 1072
Bst6I CTCTTC 2 cut(s) 122, 477
BstACI GRCGYC 1 cut(s) 78
BstAUI TGTACA 2 cut(s) 688, 861
BstC8I GCNNGC 2 cut(s) 404, 702
BstDEI CTNAG 1 cut(s) 245
BstDSI CCRYGG 2 cut(s) 258, 1102
BstF5I GGATG 3 cut(s) 358, 602, 831
BstFNI CGCG 1 cut(s) 29
BstHHI GCGC 1 cut(s) 229
BstMAI GTCTC 4 cut(s) 97, 385, 413, 753
BstMWI GCNNNNNNNGC 2 cut(s) 15, 805
BstNI CCWGG 3 cut(s) 657, 771, 957
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 4 cut(s) 635, 655, 769, 955
BstSFI CTRYAG 1 cut(s) 55
BstSLI GKGCMC 3 cut(s) 367, 801, 882
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 211, 289
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 3 cut(s) 349, 518, 635
BtgI CCRYGG 2 cut(s) 258, 1102
BtsCI GGATG 3 cut(s) 358, 602, 831
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 5 cut(s) 156, 551, 799, 826, 909
Cac8I GCNNGC 2 cut(s) 404, 702
CfoI GCGC 1 cut(s) 229
Cfr13I GGNCC 2 cut(s) 487, 516
CseI GACGC 3 cut(s) 35, 67, 814
Csp6I GTAC 5 cut(s) 31, 63, 689, 862, 927
CspCI CAANNNNNGTGG 2 cut(s) 802, 837
CviAII CATG 6 cut(s) 146, 259, 296, 395, 686, 1103
CviQI GTAC 5 cut(s) 31, 63, 689, 862, 927
DdeI CTNAG 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 2 cut(s) 122, 477
EarI CTCTTC 2 cut(s) 122, 477
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 258, 1102
Eco24I GRGCYC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 929
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 655, 769, 955
EcoT14I CCWWGG 2 cut(s) 258, 1102
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 2 cut(s) 258, 1102
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 6 cut(s) 149, 262, 299, 398, 689, 1106
FatI CATG 6 cut(s) 145, 258, 295, 394, 685, 1102
Fnu4HI GCNGC 4 cut(s) 10, 76, 225, 278
FokI GGATG 3 cut(s) 365, 609, 838
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 4 cut(s) 10, 76, 225, 278
GlaI GCGC 1 cut(s) 228
GluI GCNGC 4 cut(s) 10, 76, 225, 278
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 3 cut(s) 349, 518, 635
HapII CCGG 3 cut(s) 72, 350, 636
HgaI GACGC 3 cut(s) 35, 67, 814
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 6 cut(s) 149, 262, 299, 398, 689, 1106
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HindIII AAGCTT 3 cut(s) 164, 495, 664
HinfI GANTC 3 cut(s) 320, 341, 1088
HpaII CCGG 3 cut(s) 72, 350, 636
HphI GGTGA 2 cut(s) 76, 602
Hpy166II GTNNAC 4 cut(s) 691, 799, 862, 864
Hpy188I TCNGA 2 cut(s) 127, 1110
Hpy188III TCNNGA 7 cut(s) 183, 251, 307, 530, 788, 1033, 1077
Hpy8I GTNNAC 4 cut(s) 691, 799, 862, 864
HpyAV CCTTC 5 cut(s) 551, 581, 587, 953, 1105
HpyCH4III ACNGT 4 cut(s) 428, 479, 859, 1072
HpyCH4V TGCA 6 cut(s) 149, 549, 568, 600, 653, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 805
HpyF3I CTNAG 1 cut(s) 245
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 6 cut(s) 149, 262, 299, 398, 689, 1106
HspAI GCGC 1 cut(s) 227
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 3 cut(s) 114, 135, 1009
Lsp1109I GCAGC 2 cut(s) 211, 289
LweI GCATC 2 cut(s) 244, 587
MaeIII GTNAC 5 cut(s) 151, 214, 731, 907, 994
MboII GAAGA 7 cut(s) 59, 109, 494, 596, 944, 961, 1138
MhlI GDGCHC 5 cut(s) 132, 367, 414, 801, 882
MluCI AATT 6 cut(s) 19, 205, 357, 1116, 1134, 1142
MluI ACGCGT 1 cut(s) 27
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 1036
MseI TTAA 4 cut(s) 576, 723, 1119, 1150
MslI CAYNNNNRTG 2 cut(s) 104, 285
MspI CCGG 3 cut(s) 72, 350, 636
MspR9I CCNGG 4 cut(s) 637, 657, 771, 957
MvaI CCWGG 3 cut(s) 657, 771, 957
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 15, 805
NciI CCSGG 1 cut(s) 637
NcoI CCATGG 2 cut(s) 258, 1102
NlaIII CATG 6 cut(s) 149, 262, 299, 398, 689, 1106
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 3 cut(s) 151, 731, 907
NspI RCATGY 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 341, 1088
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 4 cut(s) 11, 77, 226, 279
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 655, 769, 955
PspGI CCWGG 3 cut(s) 655, 769, 955
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 487, 516
RsaI GTAC 5 cut(s) 32, 64, 690, 863, 928
RsaNI GTAC 5 cut(s) 31, 63, 689, 862, 927
RseI CAYNNNNRTG 2 cut(s) 104, 285
SacI GAGCTC 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 4 cut(s) 576, 723, 1119, 1150
SatI GCNGC 4 cut(s) 10, 76, 225, 278
Sau96I GGNCC 2 cut(s) 487, 516
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 4 cut(s) 637, 657, 771, 957
SduI GDGCHC 5 cut(s) 132, 367, 414, 801, 882
SfaNI GCATC 2 cut(s) 244, 587
SfcI CTRYAG 1 cut(s) 55
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 104, 285
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 6 cut(s) 19, 205, 357, 1116, 1134, 1142
SsiI CCGC 3 cut(s) 10, 16, 75
SspI AATATT 3 cut(s) 836, 963, 1083
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 4 cut(s) 635, 655, 769, 955
StyI CCWWGG 2 cut(s) 258, 1102
TaaI ACNGT 4 cut(s) 428, 479, 859, 1072
TaqI TCGA 1 cut(s) 210
TasI AATT 6 cut(s) 19, 205, 357, 1116, 1134, 1142
TatI WGTACW 2 cut(s) 688, 861
TauI GCSGC 2 cut(s) 12, 78
TfiI GAWTC 2 cut(s) 341, 1088
Tru1I TTAA 4 cut(s) 576, 723, 1119, 1150
Tru9I TTAA 4 cut(s) 576, 723, 1119, 1150
TscAI CASTG 5 cut(s) 156, 551, 806, 826, 916
TseFI GTSAC 3 cut(s) 151, 731, 907
TseI GCWGC 2 cut(s) 224, 277
Tsp45I GTSAC 3 cut(s) 151, 731, 907
TspDTI ATGAA 3 cut(s) 597, 635, 674
TspGWI ACGGA 3 cut(s) 170, 479, 1019
TspRI CASTG 5 cut(s) 156, 551, 806, 826, 916
VneI GTGCAC 1 cut(s) 797
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 1142
XceI RCATGY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.