Rh7DG468500

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011866
Physical Location & Seq
Forward (+)
66873218 .. 66878992
5775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG468500.1

Sequence Viewer

Length: 945 bp
ATGGAGAATATGATGAGCCGCCTCCGCAATTTGGACGCGTACCCCAAAATCAACGAAGATTTCTACAGCCGTACCCTCTCCGGCGGCGTCATCACCCTCGTCTCCTCCATCGTTATGCTCCTGCTCTTCCTCTCCGAGCTCCAGTTATATCTACATGCGGTGACGGAAACGAAGCTTGTGGTGGATACTTCGAGAGGAGAAACCCTGCGTATCAATTTCGATGTAACCTTTGCTGCGCTTCCTTGTTCTATACTCAGTCTTGATGCCATGGACATTAGTGGAGAGCAGCACCTTGATGTAAAACATGACATTATCAAGAAAAGAATAGACTCCAATGGAAATGTTATAGAATCAAGGCCGGATGGAATTGGTGCCCCCAAGATTGACAAGCCTTTACAGAGACATGGTGGCAGACTTGAGCACAATGAGACATACTGTGGTTCTTGTTATGGTGCAGAAGCGAATGATGAGGATTGTTGTAATAACTGTGAAGAGGTCCGTGAAGCTTACCGAAAGAAAGGTTGGGCCATTTCAAATCCAGATTTGATTGACCAGTGCAAAAGAGAAGGGTTTTTGCAAAAGATTAAAGATGAAGAAGGTGAAGGATGCAATATATATGGGTTCTTGGAAGTCAATAAGGTGGCCGGGAACTTTCATTTTGCACCTGGGAAAAGCTTTCAACAATCAAATGTTCATGTACACGATTTGCTGGCATTTCAAAAGGATAGTTTTAATATAAGTCACACAATCAACAGATTGTCTTTTGGAGACTATTTCCCTGGTGTTGTCAATCCTCTTGATGGGGTGCACTGGACACAGGACAACCCCAGTGGGATGTATCAATATTTTATCAAGGTCAGAGTCCAGCAAAATTTTCTTTATAGTTTTTCTTTCCTAATGGAAGCAACATGCAACGTGCATTGTCTCAACTCATTTGCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

314

Amino Acids

35.5

Weight (kDa)

5.46

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 8 - 97 6.2e-32 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 149 - 288 1e-55 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36050 AT1G36050
fragaria_vesca FvH4_5g37810 FvH4_5g37810 FvH4_5g37810
malus_domestica MD08G1180300.v1.1 MD15G1365600.v1.1
prunus_persica Prupe.1G513700_v2.0.a1
pyrus_communis pycom08g15430 pycom15g32800
rosa_chinensis RchiOBHm_Chr7g0239691
rosa_laevigata RLG00000000741
rosa_multiflora Rmu_sc0000063.1_g000019
rosa_roxburghii Rroxscaffold_3G00220830
rosa_samantha Rh7AG482900 Rh7BG455600 Rh7CG500300 Rh7DG468500
rosa_wichuraiana Rw7G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 1 cut(s) 38
AciI CCGC 4 cut(s) 19, 25, 84, 158
AcoI YGGCCR 1 cut(s) 642
AcsI RAATTY 1 cut(s) 871
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 41, 73, 699
AfiI CCNNNNNNNGG 2 cut(s) 31, 800
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 3 cut(s) 534, 680, 719
AjnI CCWGG 2 cut(s) 664, 778
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 4 cut(s) 139, 175, 506, 675
AluI AGCT 4 cut(s) 139, 175, 506, 675
Alw21I GWGCWC 3 cut(s) 141, 423, 810
Alw26I GTCTC 5 cut(s) 106, 394, 422, 762, 929
Alw44I GTGCAC 1 cut(s) 806
AoxI GGCC 3 cut(s) 356, 525, 642
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 2 cut(s) 233, 286
ApoI RAATTY 1 cut(s) 871
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 496, 525
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 3 cut(s) 85, 172, 611
AvaII GGWCC 1 cut(s) 496
BaeGI GKGCMC 2 cut(s) 376, 810
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BanI GGYRCC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 3 cut(s) 141, 423, 810
BbvI GCAGC 2 cut(s) 220, 298
BccI CCATC 3 cut(s) 116, 356, 794
BceAI ACGGC 1 cut(s) 54
BciT130I CCWGG 2 cut(s) 666, 780
BciVI GTATCC 1 cut(s) 178
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 5 cut(s) 106, 394, 422, 762, 929
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 4 cut(s) 19, 85, 234, 287
BlsI GCNGC 4 cut(s) 20, 86, 235, 288
Bme1390I CCNGG 3 cut(s) 646, 666, 780
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 496, 525
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 3 cut(s) 646, 666, 780
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 2 cut(s) 253, 596
BmuI ACTGGG 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 646
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 267, 665, 778
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 800
Bse1I ACTGG 4 cut(s) 142, 553, 815, 828
BseBI CCWGG 2 cut(s) 666, 780
BseDI CCNNGG 3 cut(s) 267, 665, 778
BseGI GGATG 3 cut(s) 367, 611, 840
BseLI CCNNNNNNNGG 2 cut(s) 31, 800
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 4 cut(s) 142, 553, 815, 828
BseRI GAGGAG 2 cut(s) 94, 210
BseSI GKGCMC 2 cut(s) 376, 810
BseXI GCAGC 2 cut(s) 220, 298
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 3 cut(s) 358, 527, 644
BshNI GGYRCC 1 cut(s) 371
BsiHKAI GWGCWC 3 cut(s) 141, 423, 810
BsiSI CCGG 3 cut(s) 81, 359, 645
BslI CCNNNNNNNGG 2 cut(s) 31, 800
BsmAI GTCTC 5 cut(s) 106, 394, 422, 762, 929
BsmBI CGTCTC 1 cut(s) 106
BsnI GGCC 3 cut(s) 358, 527, 644
Bsp1286I GDGCHC 4 cut(s) 141, 376, 423, 810
Bsp1407I TGTACA 1 cut(s) 697
Bsp19I CCATGG 1 cut(s) 267
BspACI CCGC 4 cut(s) 19, 25, 84, 158
BspANI GGCC 3 cut(s) 358, 527, 644
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 1 cut(s) 373
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 371
BsrGI TGTACA 1 cut(s) 697
BsrI ACTGG 4 cut(s) 142, 553, 815, 828
BssECI CCNNGG 3 cut(s) 267, 665, 778
BssNI GRCGYC 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 666, 780
Bst4CI ACNGT 2 cut(s) 437, 488
Bst6I CTCTTC 2 cut(s) 131, 486
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 697
BstC8I GCNNGC 1 cut(s) 711
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 3 cut(s) 367, 611, 840
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 5 cut(s) 106, 394, 422, 762, 929
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 2 cut(s) 666, 780
BstNSI RCATGY 2 cut(s) 158, 912
BstSCI CCNGG 3 cut(s) 644, 664, 778
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 2 cut(s) 376, 810
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 220, 298
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 3 cut(s) 358, 527, 644
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 3 cut(s) 367, 611, 840
BtsIMutI CAGTG 3 cut(s) 560, 808, 835
Cac8I GCNNGC 1 cut(s) 711
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 496, 525
CseI GACGC 2 cut(s) 44, 76
Csp6I GTAC 3 cut(s) 40, 72, 698
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 6 cut(s) 155, 268, 305, 404, 695, 909
CviQI GTAC 3 cut(s) 40, 72, 698
DdeI CTNAG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 642
Eam1104I CTCTTC 2 cut(s) 131, 486
EarI CTCTTC 2 cut(s) 131, 486
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 496
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 664, 778
EcoT14I CCWWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 6 cut(s) 158, 271, 308, 407, 698, 912
FatI CATG 6 cut(s) 154, 267, 304, 403, 694, 908
Fnu4HI GCNGC 4 cut(s) 19, 85, 234, 287
FokI GGATG 3 cut(s) 374, 618, 847
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 4 cut(s) 19, 85, 234, 287
GlaI GCGC 1 cut(s) 237
GluI GCNGC 4 cut(s) 19, 85, 234, 287
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 3 cut(s) 358, 527, 644
HapII CCGG 3 cut(s) 81, 359, 645
HgaI GACGC 2 cut(s) 44, 76
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 158, 271, 308, 407, 698, 912
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HindIII AAGCTT 3 cut(s) 173, 504, 673
HinfI GANTC 3 cut(s) 329, 350, 861
HpaII CCGG 3 cut(s) 81, 359, 645
HphI GGTGA 3 cut(s) 85, 172, 611
Hpy166II GTNNAC 2 cut(s) 700, 808
Hpy188I TCNGA 2 cut(s) 136, 860
Hpy188III TCNNGA 5 cut(s) 192, 260, 316, 539, 797
Hpy8I GTNNAC 2 cut(s) 700, 808
HpyAV CCTTC 3 cut(s) 560, 590, 596
HpyCH4III ACNGT 2 cut(s) 437, 488
HpyCH4IV ACGT 1 cut(s) 915
HpyCH4V TGCA 8 cut(s) 455, 558, 577, 609, 662, 808, 912, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 915
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 158, 271, 308, 407, 698, 912
HspAI GCGC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 123, 144
Lsp1109I GCAGC 2 cut(s) 220, 298
LweI GCATC 2 cut(s) 253, 596
MaeII ACGT 1 cut(s) 915
MaeIII GTNAC 3 cut(s) 160, 223, 740
MboII GAAGA 4 cut(s) 68, 118, 503, 605
MhlI GDGCHC 4 cut(s) 141, 376, 423, 810
MluCI AATT 4 cut(s) 28, 214, 366, 871
MluI ACGCGT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 323, 870
MnlI CCTC 9 cut(s) 32, 86, 107, 115, 140, 188, 463, 487, 804
MseI TTAA 2 cut(s) 585, 732
MslI CAYNNNNRTG 2 cut(s) 113, 294
MspI CCGG 3 cut(s) 81, 359, 645
MspR9I CCNGG 3 cut(s) 646, 666, 780
MvaI CCWGG 2 cut(s) 666, 780
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 24
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 267
NlaIII CATG 6 cut(s) 158, 271, 308, 407, 698, 912
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 160, 740
NspI RCATGY 2 cut(s) 158, 912
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 4 cut(s) 20, 86, 235, 288
PleI GAGTC 2 cut(s) 323, 869
PpsI GAGTC 2 cut(s) 323, 869
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 664, 778
PspGI CCWGG 2 cut(s) 664, 778
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 2 cut(s) 496, 525
RsaI GTAC 3 cut(s) 41, 73, 699
RsaNI GTAC 3 cut(s) 40, 72, 698
RseI CAYNNNNRTG 2 cut(s) 113, 294
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 585, 732
SatI GCNGC 4 cut(s) 19, 85, 234, 287
Sau96I GGNCC 2 cut(s) 496, 525
SchI GAGTC 2 cut(s) 323, 870
ScrFI CCNGG 3 cut(s) 646, 666, 780
SduI GDGCHC 4 cut(s) 141, 376, 423, 810
SfaNI GCATC 2 cut(s) 253, 596
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 113, 294
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 4 cut(s) 28, 214, 366, 871
SsiI CCGC 4 cut(s) 19, 25, 84, 158
SspI AATATT 1 cut(s) 845
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 644, 664, 778
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 437, 488
TaiI ACGT 1 cut(s) 918
TaqI TCGA 2 cut(s) 191, 219
TasI AATT 4 cut(s) 28, 214, 366, 871
TatI WGTACW 1 cut(s) 697
TauI GCSGC 2 cut(s) 21, 87
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 2 cut(s) 585, 732
Tru9I TTAA 2 cut(s) 585, 732
TscAI CASTG 3 cut(s) 560, 815, 835
TseFI GTSAC 2 cut(s) 160, 740
TseI GCWGC 2 cut(s) 233, 286
Tsp45I GTSAC 2 cut(s) 160, 740
TspDTI ATGAA 3 cut(s) 606, 644, 683
TspGWI ACGGA 2 cut(s) 179, 488
TspRI CASTG 3 cut(s) 560, 815, 835
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 1 cut(s) 871
XceI RCATGY 2 cut(s) 158, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.