FvH4_5g37810

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011866
Physical Location & Seq
Forward (+)
27839845 .. 27845857
6013 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37810.t2

Sequence Viewer

Length: 1161 bp
ATGGAGAATATGATGAGCAAGCTCCGGAATTTGGACGCCTATCCCAAAATCAACGAAGATTTCTACAGCCGTACCCTCTCCGGCGGCGTCATCACCCTCGCCTCCTCCGTCGTTATGCTCCTCCTCTTCCTCTCCGAGCTCCAATTATATCTACATGCGGTGACGGAAACGAAGCTTGTGGTGGATACTTCGAGAGGAGAAACCCTGCGTATCAATTTCGATGTAACTTTTGCTGCGCTTCCTTGTTCTATACTCAGTCTTGATGCTATGGACATCAGTGGAGAGCAGCACCTTGATGTAAAACATGACATTATAAAAAAAAGAATAGATTCCCATGGAAATGTTATAGAATCACGGCCGGATGGAATCGGTGCTCCCAAGATTGACAAGCCTTTGCAGAGACATGGTGGCAGACTTGAGCACAACGAGACATACTGTGGTTCCTGTTATGGTGCTGAAGCGAATGATGAGGACTGCTGTAATAACTGTGAAGAGGTCCGTGAAGCTTACCGAAAGAAAGGTTGGGCCATTTCAAATCCAGATTTGATTGACCAGTGCAAAAGAGAAGGATTTATGCAAAGGATTAAAGATGAAGAAGGTGAAGGATGCAATATATATGGATTCTTGGAAGTCAATAAGGTGGCTGGGAACTTTCATTTTGCACCTGGGAAAAGCTTTCAACAATCAAATGTTCATGTACATGATTTGCTGGCGTTTCAAAAGGATAGCTTTAATATAAGTCACACAATCAACAGATTGTCTTTTGGAGACTACTTCCCTGGTGTTGTCAATCCTCTTGATGGGGTGCACTGGACACAGGACAACCCAAGTGGGATGTATCAATATTTTATCAAGGTTGTTCCTACTGTGTACACAGATGTCAGTGGGCACACTATCCAGTCAAATCAGTTCTCTGTCACTGAACATTATAGGGGTACAGAAATAGGCAACCTTCAGTTCCTTCCTGGAGTGTTTTTCTTCTATGACCTTTCCCCGATAAAGGTAACTTTCACAGAGGAGCATATTTCATTCTTACACTTCTTGACAAATGTGTGTGCCATTGTTGGAGGTGTTTTTACCGTGTCTGGAATATTGGATTCATTTATATACCATGGTCAGAAGGCTATTAAAAAGAAGATGGAAATTGGCAAATTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

387

Amino Acids

43.45

Weight (kDa)

5.72

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 8 - 97 2.3e-31 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
COPIIcoated_ERV PF07970 149 - 366 1.2e-88 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36050 AT1G36050
fragaria_vesca FvH4_5g37810 FvH4_5g37810 FvH4_5g37810
malus_domestica MD08G1180300.v1.1 MD15G1365600.v1.1
prunus_persica Prupe.1G513700_v2.0.a1
pyrus_communis pycom08g15430 pycom15g32800
rosa_chinensis RchiOBHm_Chr7g0239691
rosa_laevigata RLG00000000741
rosa_multiflora Rmu_sc0000063.1_g000019
rosa_roxburghii Rroxscaffold_3G00220830
rosa_samantha Rh7AG482900 Rh7BG455600 Rh7CG500300 Rh7DG468500
rosa_wichuraiana Rw7G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AccIII TCCGGA 1 cut(s) 24
AciI CCGC 2 cut(s) 84, 158
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 2 cut(s) 28, 1151
AcuI CTGAAG 2 cut(s) 477, 938
AcyI GRCGYC 2 cut(s) 36, 87
AfaI GTAC 4 cut(s) 73, 699, 872, 937
AfiI CCNNNNNNNGG 3 cut(s) 31, 800, 1000
AgsI TTSAA 3 cut(s) 534, 680, 719
AjnI CCWGG 3 cut(s) 664, 778, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 6 cut(s) 22, 139, 175, 506, 675, 729
AluI AGCT 6 cut(s) 22, 139, 175, 506, 675, 729
Alw21I GWGCWC 4 cut(s) 141, 376, 423, 810
Alw26I GTCTC 3 cut(s) 394, 422, 762
Alw44I GTGCAC 1 cut(s) 806
Aor13HI TCCGGA 1 cut(s) 24
AoxI GGCC 2 cut(s) 356, 525
ApaLI GTGCAC 1 cut(s) 806
ApeKI GCWGC 2 cut(s) 233, 286
ApoI RAATTY 2 cut(s) 28, 1151
Asp700I GAANNNNTTC 1 cut(s) 328
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 2 cut(s) 496, 525
AsuHPI GGTGA 3 cut(s) 85, 172, 611
AvaII GGWCC 1 cut(s) 496
BaeGI GKGCMC 2 cut(s) 810, 891
BaeI ACNNNNGTAYC 2 cut(s) 55, 88
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 4 cut(s) 141, 376, 423, 810
BbvI GCAGC 2 cut(s) 220, 298
BccI CCATC 3 cut(s) 356, 794, 1132
BceAI ACGGC 2 cut(s) 54, 371
BciT130I CCWGG 3 cut(s) 666, 780, 966
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 3 cut(s) 394, 422, 762
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 3 cut(s) 85, 234, 287
BlsI GCNGC 3 cut(s) 86, 235, 288
Bme1390I CCNGG 3 cut(s) 666, 780, 966
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 496, 525
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 3 cut(s) 666, 780, 966
BmsI GCATC 2 cut(s) 253, 596
BpmI CTGGAG 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 437
BsaHI GRCGYC 2 cut(s) 36, 87
BsaJI CCNNGG 4 cut(s) 334, 665, 778, 1111
BsaWI WCCGGW 1 cut(s) 24
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 800, 1000
Bse1I ACTGG 3 cut(s) 553, 815, 898
BseAI TCCGGA 1 cut(s) 24
BseBI CCWGG 3 cut(s) 666, 780, 966
BseDI CCNNGG 4 cut(s) 334, 665, 778, 1111
BseGI GGATG 3 cut(s) 367, 611, 840
BseLI CCNNNNNNNGG 3 cut(s) 31, 800, 1000
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 3 cut(s) 553, 815, 898
BseRI GAGGAG 5 cut(s) 94, 110, 113, 210, 1031
BseSI GKGCMC 2 cut(s) 810, 891
BseX3I CGGCCG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 220, 298
BseYI CCCAGC 1 cut(s) 644
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 2 cut(s) 358, 527
BsiEI CGRYCG 1 cut(s) 359
BsiHKAI GWGCWC 4 cut(s) 141, 376, 423, 810
BsiSI CCGG 3 cut(s) 25, 81, 359
BslI CCNNNNNNNGG 3 cut(s) 31, 800, 1000
BsmAI GTCTC 3 cut(s) 394, 422, 762
BsnI GGCC 2 cut(s) 358, 527
Bsp1286I GDGCHC 5 cut(s) 141, 376, 423, 810, 891
Bsp13I TCCGGA 1 cut(s) 24
Bsp1407I TGTACA 2 cut(s) 697, 870
Bsp19I CCATGG 2 cut(s) 334, 1111
BspACI CCGC 2 cut(s) 84, 158
BspANI GGCC 2 cut(s) 358, 527
BspCNI CTCAG 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 24
BspLI GGNNCC 1 cut(s) 442
BsrGI TGTACA 2 cut(s) 697, 870
BsrI ACTGG 3 cut(s) 553, 815, 898
BssECI CCNNGG 4 cut(s) 334, 665, 778, 1111
BssNI GRCGYC 2 cut(s) 36, 87
BssT1I CCWWGG 2 cut(s) 334, 1111
Bst2UI CCWGG 3 cut(s) 666, 780, 966
Bst4CI ACNGT 4 cut(s) 437, 488, 868, 1081
Bst6I CTCTTC 2 cut(s) 131, 486
BstACI GRCGYC 2 cut(s) 36, 87
BstAUI TGTACA 2 cut(s) 697, 870
BstC8I GCNNGC 2 cut(s) 20, 711
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 2 cut(s) 334, 1111
BstF5I GGATG 3 cut(s) 367, 611, 840
BstHHI GCGC 1 cut(s) 238
BstMAI GTCTC 3 cut(s) 394, 422, 762
BstMCI CGRYCG 1 cut(s) 359
BstNI CCWGG 3 cut(s) 666, 780, 966
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 664, 778, 964
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 2 cut(s) 810, 891
BstV1I GCAGC 2 cut(s) 220, 298
BstZI CGGCCG 1 cut(s) 356
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 2 cut(s) 358, 527
BtgI CCRYGG 2 cut(s) 334, 1111
BtsCI GGATG 3 cut(s) 367, 611, 840
BtsIMutI CAGTG 5 cut(s) 283, 560, 808, 889, 918
Cac8I GCNNGC 2 cut(s) 20, 711
CfoI GCGC 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 496, 525
CseI GACGC 2 cut(s) 44, 76
Csp6I GTAC 4 cut(s) 72, 698, 871, 936
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 7 cut(s) 155, 305, 335, 404, 695, 701, 1112
CviQI GTAC 4 cut(s) 72, 698, 871, 936
DdeI CTNAG 1 cut(s) 254
EaeI YGGCCR 1 cut(s) 356
EagI CGGCCG 1 cut(s) 356
Eam1104I CTCTTC 2 cut(s) 131, 486
EarI CTCTTC 2 cut(s) 131, 486
Ecl136II GAGCTC 1 cut(s) 139
EclXI CGGCCG 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 334, 1111
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 496
Eco52I CGGCCG 1 cut(s) 356
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 2 cut(s) 477, 938
EcoICRI GAGCTC 1 cut(s) 139
EcoRII CCWGG 3 cut(s) 664, 778, 964
EcoT14I CCWWGG 2 cut(s) 334, 1111
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 2 cut(s) 334, 1111
FaeI CATG 7 cut(s) 158, 308, 338, 407, 698, 704, 1115
FalI AAGNNNNNCTT 2 cut(s) 713, 745
FatI CATG 7 cut(s) 154, 304, 334, 403, 694, 700, 1111
Fnu4HI GCNGC 3 cut(s) 85, 234, 287
FokI GGATG 3 cut(s) 374, 618, 847
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 85, 234, 287
GlaI GCGC 1 cut(s) 237
GluI GCNGC 3 cut(s) 85, 234, 287
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 1 cut(s) 987
HaeIII GGCC 2 cut(s) 358, 527
HapII CCGG 3 cut(s) 25, 81, 359
HgaI GACGC 2 cut(s) 44, 76
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 2 cut(s) 36, 87
Hin1II CATG 7 cut(s) 158, 308, 338, 407, 698, 704, 1115
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HindIII AAGCTT 3 cut(s) 173, 504, 673
HinfI GANTC 5 cut(s) 329, 350, 366, 621, 1097
HpaII CCGG 3 cut(s) 25, 81, 359
HphI GGTGA 3 cut(s) 85, 172, 611
Hpy166II GTNNAC 3 cut(s) 808, 871, 873
Hpy188I TCNGA 2 cut(s) 136, 1119
Hpy188III TCNNGA 7 cut(s) 25, 192, 260, 539, 797, 1042, 1086
Hpy8I GTNNAC 3 cut(s) 808, 871, 873
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 6 cut(s) 560, 590, 596, 962, 971, 1114
HpyCH4III ACNGT 4 cut(s) 437, 488, 868, 1081
HpyCH4V TGCA 6 cut(s) 397, 558, 577, 609, 662, 808
HpyF3I CTNAG 1 cut(s) 254
Hsp92I GRCGYC 2 cut(s) 36, 87
Hsp92II CATG 7 cut(s) 158, 308, 338, 407, 698, 704, 1115
HspAI GCGC 1 cut(s) 236
Kpn2I TCCGGA 1 cut(s) 24
LmnI GCTCC 5 cut(s) 27, 123, 144, 379, 1018
Lsp1109I GCAGC 2 cut(s) 220, 298
LweI GCATC 2 cut(s) 253, 596
MaeIII GTNAC 5 cut(s) 160, 223, 740, 916, 1003
MboII GAAGA 6 cut(s) 68, 118, 503, 605, 970, 1147
MhlI GDGCHC 5 cut(s) 141, 376, 423, 810, 891
MluCI AATT 5 cut(s) 28, 143, 214, 1143, 1151
MmeI TCCRAC 1 cut(s) 1045
MroI TCCGGA 1 cut(s) 24
MroXI GAANNNNTTC 1 cut(s) 328
MseI TTAA 3 cut(s) 585, 732, 1128
MslI CAYNNNNRTG 3 cut(s) 294, 339, 699
MspI CCGG 3 cut(s) 25, 81, 359
MspR9I CCNGG 3 cut(s) 666, 780, 966
MvaI CCWGG 3 cut(s) 666, 780, 966
NcoI CCATGG 2 cut(s) 334, 1111
NlaIII CATG 7 cut(s) 158, 308, 338, 407, 698, 704, 1115
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 3 cut(s) 160, 740, 916
NspI RCATGY 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 328
PfeI GAWTC 5 cut(s) 329, 350, 366, 621, 1097
PfoI TCCNGGA 1 cut(s) 964
PkrI GCNGC 3 cut(s) 86, 235, 288
PsiI TTATAA 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 3 cut(s) 664, 778, 964
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 664, 778, 964
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 2 cut(s) 496, 525
RsaI GTAC 4 cut(s) 73, 699, 872, 937
RsaNI GTAC 4 cut(s) 72, 698, 871, 936
RseI CAYNNNNRTG 3 cut(s) 294, 339, 699
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 3 cut(s) 585, 732, 1128
SatI GCNGC 3 cut(s) 85, 234, 287
Sau96I GGNCC 2 cut(s) 496, 525
ScrFI CCNGG 3 cut(s) 666, 780, 966
SduI GDGCHC 5 cut(s) 141, 376, 423, 810, 891
SfaNI GCATC 2 cut(s) 253, 596
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 3 cut(s) 294, 339, 699
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 5 cut(s) 28, 143, 214, 1143, 1151
SsiI CCGC 2 cut(s) 84, 158
SspI AATATT 2 cut(s) 845, 1092
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 3 cut(s) 664, 778, 964
StyI CCWWGG 2 cut(s) 334, 1111
TaaI ACNGT 4 cut(s) 437, 488, 868, 1081
TaqI TCGA 2 cut(s) 191, 219
TasI AATT 5 cut(s) 28, 143, 214, 1143, 1151
TatI WGTACW 2 cut(s) 697, 870
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 5 cut(s) 329, 350, 366, 621, 1097
Tru1I TTAA 3 cut(s) 585, 732, 1128
Tru9I TTAA 3 cut(s) 585, 732, 1128
TscAI CASTG 5 cut(s) 283, 560, 815, 889, 925
TseFI GTSAC 3 cut(s) 160, 740, 916
TseI GCWGC 2 cut(s) 233, 286
Tsp45I GTSAC 3 cut(s) 160, 740, 916
TspDTI ATGAA 5 cut(s) 606, 644, 683, 1017, 1089
TspGWI ACGGA 3 cut(s) 97, 179, 488
TspRI CASTG 5 cut(s) 283, 560, 815, 889, 925
VneI GTGCAC 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 496
XapI RAATTY 2 cut(s) 28, 1151
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.