Prupe.1G513700_v2.0.a1

Endoplasmic reticulum-Golgi intermediate compartment protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011866
Physical Location & Seq
Reverse (-)
42277762 .. 42284306
6545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G513700.1

Sequence Viewer

Length: 1161 bp
ATGGAGAATATGATGAGCAGGCTTCGGAATTTGGACGCCTACCCCAAAATCAATGAAGATTTCTACAGTCGCACGCTCTCTGGTGGCGTCATCACTCTCGCCTCCTCCATTGTCATGCTCTTGCTCTTCCTCTCCGAGCTTCGGTTATATCTTCATGCGGTAACGGAAACAAAGCTTGTGGTGGATACTTCAAGAGGAGAAACACTACGTATCAATTTTGATGTAACCTTTTCTGCTCTTCCTTGTTCTATACTAAGTCTTGATGCCATGGACATCAGTGGCGAGCAGCATTTGGATGTAAAGCATGACATAATCAAAAAAAGATTAGACTCCCATGGAAATGTTATAGAATCAAGGCCAGATGGAATTGGTGCACCCAAGATTGAGAAGCCCTTACAAAGACATGGTGGGAGGCTTGAGCACAACGAGACATACTGTGGTTCCTGTTATGGTGCAGAAGCGGCTGATGAGGATTGTTGTAATTCCTGTGAAGACGTCCGCGAAGCTTACCGAAAGAAAGGTTGGGCAATTTCAAATCCAGATGTGATTGACCAGTGCAAAAGAGAAGGTTTTTTGCAAAGAATTAAAGATGAAGAAGGTGAAGGATGCAATATATATGGATTCTTAGAAGTCAACAAGGTAGCTGGGAACTTCCATTTTGCACCTGGGAAAAGCTTTCAACAATCAAATGTTCATGTGCATGATCTGCTGGCATTTCAAAAGGATAGTTTCAATATTAGTCACACAATCAACAGATTGTCTTTTGGAGACTATTTCCCTGGTGTTGTAAATCCTCTTGATGGCGTGCACTGGGCGCAAGCAACACCAAGTGGGATGTATCAATATTTTATCAAGGTTGTACCTACTGTGTATACAGACGTGAGTGGACACACTATCCAATCAAATCAGTTCTCTGTGACTGAACATTTTAGGGGTACAGAAGTAGGCAACCTTCAGTACCTTCCTGGAGTTTTTTTCTTCTACGATCTTTCTCCAATAAAGGTAACTTTCACAGAGGAGCATATTTCATTCTTGCACTTCCTGACAAACGTTTGTGCCATAGTAGGAGGAGTTTTTACTGTTTCTGGGATATTAGATTCATTCATATACCATGGTCAGAAGGCAATCAAGAAGAAGATGGAAATTGGCAAATTTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N

Protein Analysis

387

Amino Acids

43.33

Weight (kDa)

5.88

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011866)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36050 AT1G36050
fragaria_vesca FvH4_5g37810 FvH4_5g37810 FvH4_5g37810
malus_domestica MD08G1180300.v1.1 MD15G1365600.v1.1
prunus_persica Prupe.1G513700_v2.0.a1
pyrus_communis pycom08g15430 pycom15g32800
rosa_chinensis RchiOBHm_Chr7g0239691
rosa_laevigata RLG00000000741
rosa_multiflora Rmu_sc0000063.1_g000019
rosa_roxburghii Rroxscaffold_3G00220830
rosa_samantha Rh7AG482900 Rh7BG455600 Rh7CG500300 Rh7DG468500
rosa_wichuraiana Rw7G040420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 872
AccII CGCG 1 cut(s) 501
AciI CCGC 3 cut(s) 158, 461, 499
AclI AACGTT 1 cut(s) 1050
AcsI RAATTY 2 cut(s) 28, 1151
AcuI CTGAAG 1 cut(s) 938
AcyI GRCGYC 3 cut(s) 36, 87, 495
AdeI CACNNNGTG 1 cut(s) 830
AfaI GTAC 3 cut(s) 861, 937, 959
AfiI CCNNNNNNNGG 2 cut(s) 141, 800
AgsI TTSAA 5 cut(s) 192, 534, 680, 719, 733
AjiI CACGTC 1 cut(s) 880
AjnI CCWGG 3 cut(s) 664, 778, 964
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 5 cut(s) 139, 175, 506, 644, 675
AluI AGCT 5 cut(s) 139, 175, 506, 644, 675
Alw21I GWGCWC 3 cut(s) 376, 423, 810
Alw26I GTCTC 2 cut(s) 422, 762
Alw44I GTGCAC 2 cut(s) 372, 806
AoxI GGCC 1 cut(s) 356
ApaLI GTGCAC 2 cut(s) 372, 806
ApeKI GCWGC 1 cut(s) 286
ApoI RAATTY 2 cut(s) 28, 1151
AspLEI GCGC 1 cut(s) 817
AsuHPI GGTGA 1 cut(s) 611
BaeGI GKGCMC 2 cut(s) 376, 810
BaeI ACNNNNGTAYC 2 cut(s) 927, 960
BarI GAAGNNNNNNTAC 2 cut(s) 936, 968
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 3 cut(s) 376, 423, 810
BbvI GCAGC 1 cut(s) 298
BccI CCATC 3 cut(s) 356, 794, 1132
BciT130I CCWGG 3 cut(s) 666, 780, 966
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 422, 762
BfmI CTRYAG 1 cut(s) 64
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 2 cut(s) 287, 462
BlsI GCNGC 2 cut(s) 288, 463
Bme1390I CCNGG 3 cut(s) 666, 780, 966
BmgBI CACGTC 1 cut(s) 880
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 3 cut(s) 666, 780, 966
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 2 cut(s) 253, 596
BmuI ACTGGG 1 cut(s) 820
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 1 cut(s) 987
BpuEI CTTGAG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 209
BsaHI GRCGYC 3 cut(s) 36, 87, 495
BsaJI CCNNGG 5 cut(s) 267, 334, 665, 778, 1111
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 800
Bse1I ACTGG 2 cut(s) 553, 815
BseBI CCWGG 3 cut(s) 666, 780, 966
BseDI CCNNGG 5 cut(s) 267, 334, 665, 778, 1111
BseGI GGATG 3 cut(s) 301, 611, 840
BseLI CCNNNNNNNGG 2 cut(s) 141, 800
BseNI ACTGG 2 cut(s) 553, 815
BseRI GAGGAG 4 cut(s) 94, 210, 1031, 1083
BseSI GKGCMC 2 cut(s) 376, 810
BseXI GCAGC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 644
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 1 cut(s) 358
BsiHKAI GWGCWC 3 cut(s) 376, 423, 810
BslI CCNNNNNNNGG 2 cut(s) 141, 800
BsmAI GTCTC 2 cut(s) 422, 762
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 376, 423, 810
Bsp143I GATC 2 cut(s) 703, 985
Bsp19I CCATGG 3 cut(s) 267, 334, 1111
BspACI CCGC 3 cut(s) 158, 461, 499
BspANI GGCC 1 cut(s) 358
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 1 cut(s) 442
BspQI GCTCTTC 2 cut(s) 131, 243
BsrI ACTGG 2 cut(s) 553, 815
BssECI CCNNGG 5 cut(s) 267, 334, 665, 778, 1111
BssMI GATC 2 cut(s) 703, 985
BssNAI GTATAC 1 cut(s) 873
BssNI GRCGYC 3 cut(s) 36, 87, 495
BssT1I CCWWGG 3 cut(s) 267, 334, 1111
Bst1107I GTATAC 1 cut(s) 873
Bst2UI CCWGG 3 cut(s) 666, 780, 966
Bst4CI ACNGT 4 cut(s) 68, 437, 868, 1081
Bst6I CTCTTC 2 cut(s) 131, 243
BstACI GRCGYC 3 cut(s) 36, 87, 495
BstAPI GCANNNNNTGC 1 cut(s) 706
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 6 cut(s) 20, 74, 284, 711, 806, 819
BstDEI CTNAG 2 cut(s) 254, 625
BstDSI CCRYGG 3 cut(s) 267, 334, 1111
BstF5I GGATG 3 cut(s) 301, 611, 840
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 817
BstKTI GATC 2 cut(s) 706, 988
BstMAI GTCTC 2 cut(s) 422, 762
BstMBI GATC 2 cut(s) 703, 985
BstMWI GCNNNNNNNGC 3 cut(s) 461, 706, 814
BstNI CCWGG 3 cut(s) 666, 780, 966
BstSCI CCNGG 3 cut(s) 664, 778, 964
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 2 cut(s) 376, 810
BstSNI TACGTA 1 cut(s) 209
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 498
BstZ17I GTATAC 1 cut(s) 873
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 3 cut(s) 267, 334, 1111
BtrI CACGTC 1 cut(s) 880
BtsCI GGATG 3 cut(s) 301, 611, 840
BtsIMutI CAGTG 3 cut(s) 283, 560, 808
Cac8I GCNNGC 6 cut(s) 20, 74, 284, 711, 806, 819
CfoI GCGC 1 cut(s) 817
CseI GACGC 2 cut(s) 44, 76
Csp6I GTAC 3 cut(s) 860, 936, 958
CspCI CAANNNNNGTGG 2 cut(s) 159, 194
CviAII CATG 9 cut(s) 115, 155, 268, 305, 335, 404, 695, 701, 1112
CviQI GTAC 3 cut(s) 860, 936, 958
DdeI CTNAG 2 cut(s) 254, 625
DpnI GATC 2 cut(s) 705, 987
DpnII GATC 2 cut(s) 703, 985
DraIII CACNNNGTG 1 cut(s) 830
Eam1104I CTCTTC 2 cut(s) 131, 243
EarI CTCTTC 2 cut(s) 131, 243
Eco105I TACGTA 1 cut(s) 209
Eco130I CCWWGG 3 cut(s) 267, 334, 1111
Eco57I CTGAAG 1 cut(s) 938
EcoRII CCWGG 3 cut(s) 664, 778, 964
EcoT14I CCWWGG 3 cut(s) 267, 334, 1111
ErhI CCWWGG 3 cut(s) 267, 334, 1111
FaeI CATG 9 cut(s) 118, 158, 271, 308, 338, 407, 698, 704, 1115
FatI CATG 9 cut(s) 114, 154, 267, 304, 334, 403, 694, 700, 1111
FblI GTMKAC 1 cut(s) 872
Fnu4HI GCNGC 2 cut(s) 287, 462
FokI GGATG 3 cut(s) 308, 618, 847
Fsp4HI GCNGC 2 cut(s) 287, 462
GlaI GCGC 1 cut(s) 816
GluI GCNGC 2 cut(s) 287, 462
GsaI CCCAGC 1 cut(s) 648
GsuI CTGGAG 1 cut(s) 987
HaeIII GGCC 1 cut(s) 358
HgaI GACGC 2 cut(s) 44, 76
HhaI GCGC 1 cut(s) 817
Hin1I GRCGYC 3 cut(s) 36, 87, 495
Hin1II CATG 9 cut(s) 118, 158, 271, 308, 338, 407, 698, 704, 1115
Hin6I GCGC 1 cut(s) 815
HinP1I GCGC 1 cut(s) 815
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 3 cut(s) 173, 504, 673
HinfI GANTC 4 cut(s) 329, 350, 621, 1097
HphI GGTGA 1 cut(s) 611
Hpy166II GTNNAC 5 cut(s) 374, 634, 808, 873, 887
Hpy188I TCNGA 3 cut(s) 27, 136, 1119
Hpy188III TCNNGA 6 cut(s) 192, 260, 539, 797, 1042, 1129
Hpy8I GTNNAC 5 cut(s) 374, 634, 808, 873, 887
HpyAV CCTTC 6 cut(s) 560, 590, 596, 962, 971, 1114
HpyCH4III ACNGT 4 cut(s) 68, 437, 868, 1081
HpyCH4IV ACGT 4 cut(s) 208, 495, 879, 1050
HpyCH4V TGCA 9 cut(s) 374, 455, 558, 577, 609, 662, 700, 808, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 461, 706, 814
HpyF3I CTNAG 2 cut(s) 254, 625
HpySE526I ACGT 4 cut(s) 208, 495, 879, 1050
Hsp92I GRCGYC 3 cut(s) 36, 87, 495
Hsp92II CATG 9 cut(s) 118, 158, 271, 308, 338, 407, 698, 704, 1115
HspAI GCGC 1 cut(s) 815
Kzo9I GATC 2 cut(s) 703, 985
LguI GCTCTTC 2 cut(s) 131, 243
LmnI GCTCC 1 cut(s) 1018
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 2 cut(s) 253, 596
MaeII ACGT 4 cut(s) 208, 495, 879, 1050
MaeIII GTNAC 5 cut(s) 160, 223, 740, 916, 1003
MalI GATC 2 cut(s) 705, 987
MboI GATC 2 cut(s) 703, 985
MboII GAAGA 9 cut(s) 68, 118, 143, 230, 503, 605, 970, 1144, 1147
MhlI GDGCHC 3 cut(s) 376, 423, 810
MluCI AATT 8 cut(s) 28, 214, 366, 481, 528, 582, 1143, 1151
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 9 cut(s) 112, 115, 140, 188, 405, 463, 804, 1009, 1061
MseI TTAA 1 cut(s) 585
MslI CAYNNNNRTG 4 cut(s) 113, 294, 339, 699
MspR9I CCNGG 3 cut(s) 666, 780, 966
MvaI CCWGG 3 cut(s) 666, 780, 966
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 461, 706, 814
NcoI CCATGG 3 cut(s) 267, 334, 1111
NdeII GATC 2 cut(s) 703, 985
NlaIII CATG 9 cut(s) 118, 158, 271, 308, 338, 407, 698, 704, 1115
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 740, 916
PciSI GCTCTTC 2 cut(s) 131, 243
PfeI GAWTC 3 cut(s) 350, 621, 1097
PfoI TCCNGGA 1 cut(s) 964
PkrI GCNGC 2 cut(s) 288, 463
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 209
Psp1406I AACGTT 1 cut(s) 1050
Psp6I CCWGG 3 cut(s) 664, 778, 964
PspFI CCCAGC 1 cut(s) 644
PspGI CCWGG 3 cut(s) 664, 778, 964
PspN4I GGNNCC 1 cut(s) 442
RsaI GTAC 3 cut(s) 861, 937, 959
RsaNI GTAC 3 cut(s) 860, 936, 958
RseI CAYNNNNRTG 4 cut(s) 113, 294, 339, 699
SapI GCTCTTC 2 cut(s) 131, 243
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 2 cut(s) 287, 462
Sau3AI GATC 2 cut(s) 703, 985
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 666, 780, 966
SduI GDGCHC 3 cut(s) 376, 423, 810
SfaNI GCATC 2 cut(s) 253, 596
SfcI CTRYAG 1 cut(s) 64
SmiMI CAYNNNNRTG 4 cut(s) 113, 294, 339, 699
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
SnaBI TACGTA 1 cut(s) 209
Sse9I AATT 8 cut(s) 28, 214, 366, 481, 528, 582, 1143, 1151
SsiI CCGC 3 cut(s) 158, 461, 499
SspI AATATT 2 cut(s) 736, 845
StyD4I CCNGG 3 cut(s) 664, 778, 964
StyI CCWWGG 3 cut(s) 267, 334, 1111
TaaI ACNGT 4 cut(s) 68, 437, 868, 1081
TaiI ACGT 4 cut(s) 211, 498, 882, 1053
TasI AATT 8 cut(s) 28, 214, 366, 481, 528, 582, 1143, 1151
TauI GCSGC 1 cut(s) 464
TfiI GAWTC 3 cut(s) 350, 621, 1097
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 3 cut(s) 283, 560, 815
TseFI GTSAC 2 cut(s) 740, 916
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 2 cut(s) 740, 916
TspDTI ATGAA 7 cut(s) 69, 143, 606, 683, 1017, 1089, 1093
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 3 cut(s) 283, 560, 815
VneI GTGCAC 2 cut(s) 372, 806
XapI RAATTY 2 cut(s) 28, 1151
XcmI CCANNNNNNNNNTGG 1 cut(s) 662
XmiI GTMKAC 1 cut(s) 872
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.