AT1G36940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012979
Physical Location & Seq
Forward (+)
14003819 .. 14005502
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G36940.1

Sequence Viewer

Length: 549 bp
ATGATGGAGACGAGACAAAACAGTGTTCAGTTCCAAAGACCAACTTTCTTACCAATGTTATGTTCAAGACCTTCCATCAAGAACGTGACCCTCCCGGCTAAATCACATCAAGATGACTCATACCAACAAGCCGATCCTTTATCTCCCAAAATCAGCTGCATTGGTCAAGTCAAACGTAGCAACAAGATCACCGGCTTCCCCACCACCACCACCACCTCCACCTCCATCACCCCCGTCGCTCAGCACCGTTACTTCAAGCTTAAACGTCTTTTCTCCGGCAAGAATCTCTCTTTCTCCGCTCCCACTACCACCACTACCAGGACTAGTCGTGGAAGAATAAGAAAGGAGGAGTTTGGTAACAAAAAGATTGATGTTATCGACGTTGCTGAATTGGACCCACCTTTGCCGGTGGTTAAAAAGACACACGACGGTGGCGCCGGAGATAAAGCGGCGGAGAATCTTTGGAAGAGGAGATCTGGTGGTTGTCAACTACGGAGTTTGCAGATTCAAACCAATGGAGTTCATCAGCTGAAAGTTACAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

10.29

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 434
AccBSI CCGCTC 1 cut(s) 299
AciI CCGC 3 cut(s) 297, 449, 452
AclWI GGATC 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 318
AgsI TTSAA 3 cut(s) 66, 256, 509
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 3 cut(s) 156, 259, 529
AluI AGCT 3 cut(s) 156, 259, 529
Alw26I GTCTC 2 cut(s) 2, 7
AlwI GGATC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 1 cut(s) 394
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 181, 220
AvaII GGWCC 1 cut(s) 394
BanI GGYRCC 1 cut(s) 434
BbvI GCAGC 1 cut(s) 143
BccI CCATC 2 cut(s) 83, 233
BciT130I CCWGG 1 cut(s) 319
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 2, 7
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 438
BglII AGATCT 1 cut(s) 473
BisI GCNGC 2 cut(s) 157, 450
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 2 cut(s) 158, 451
Bme1390I CCNGG 2 cut(s) 95, 319
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 2 cut(s) 396, 436
BmrFI CCNGG 2 cut(s) 95, 319
Bpu1102I GCTNAGC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse118I RCCGGY 2 cut(s) 191, 406
BseBI CCWGG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 318
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 2 cut(s) 362, 484
BseXI GCAGC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 434
BsiSI CCGG 5 cut(s) 95, 192, 276, 407, 438
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 2 cut(s) 2, 7
BsmBI CGTCTC 1 cut(s) 2
Bsp143I GATC 3 cut(s) 133, 186, 473
Bsp1720I GCTNAGC 1 cut(s) 240
BspACI CCGC 3 cut(s) 297, 449, 452
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 2 cut(s) 396, 436
BspPI GGATC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 434
BsrBI CCGCTC 1 cut(s) 299
BsrFI RCCGGY 2 cut(s) 191, 406
BssAI RCCGGY 2 cut(s) 191, 406
BssMI GATC 3 cut(s) 133, 186, 473
BssNI GRCGYC 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 4 cut(s) 23, 248, 431, 544
Bst6I CTCTTC 1 cut(s) 461
BstACI GRCGYC 1 cut(s) 435
BstDEI CTNAG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 438
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 3 cut(s) 136, 189, 476
BstMAI GTCTC 2 cut(s) 2, 7
BstMBI GATC 3 cut(s) 133, 186, 473
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 93, 317
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 473
BstYI RGATCY 1 cut(s) 473
BtsIMutI CAGTG 1 cut(s) 28
CfoI GCGC 1 cut(s) 437
Cfr10I RCCGGY 2 cut(s) 191, 406
Cfr13I GGNCC 1 cut(s) 394
CviJI RGCY 6 cut(s) 98, 131, 156, 195, 259, 529
CviKI_1 RGCY 6 cut(s) 98, 131, 156, 195, 259, 529
DdeI CTNAG 1 cut(s) 240
DinI GGCGCC 1 cut(s) 436
DpnI GATC 3 cut(s) 135, 188, 475
DpnII GATC 3 cut(s) 133, 186, 473
Eam1104I CTCTTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 461
EciI GGCGGA 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 317
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 2
FaiI YATR 2 cut(s) 61, 121
FalI AAGNNNNNCTT 2 cut(s) 28, 60
Fnu4HI GCNGC 2 cut(s) 157, 450
Fsp4HI GCNGC 2 cut(s) 157, 450
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 436
GluI GCNGC 2 cut(s) 157, 450
HaeII RGCGCY 1 cut(s) 438
HapII CCGG 5 cut(s) 95, 192, 276, 407, 438
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 435
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HincII GTYRAC 1 cut(s) 488
HindII GTYRAC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 4 cut(s) 116, 283, 457, 505
HpaII CCGG 5 cut(s) 95, 192, 276, 407, 438
HphI GGTGA 2 cut(s) 181, 220
Hpy166II GTNNAC 1 cut(s) 488
Hpy188III TCNNGA 3 cut(s) 66, 79, 110
Hpy8I GTNNAC 1 cut(s) 488
Hpy99I CGWCG 3 cut(s) 239, 383, 431
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 4 cut(s) 23, 248, 431, 544
HpyCH4IV ACGT 4 cut(s) 84, 175, 265, 381
HpyCH4V TGCA 2 cut(s) 159, 502
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 4 cut(s) 84, 175, 265, 381
Hsp92I GRCGYC 1 cut(s) 435
HspAI GCGC 1 cut(s) 435
KasI GGCGCC 1 cut(s) 434
Kzo9I GATC 3 cut(s) 133, 186, 473
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 8 cut(s) 108, 205, 289, 304, 331, 420, 451, 462
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 1 cut(s) 324
MaeII ACGT 4 cut(s) 84, 175, 265, 381
MaeIII GTNAC 4 cut(s) 85, 248, 356, 535
MalI GATC 3 cut(s) 135, 188, 475
MbiI CCGCTC 1 cut(s) 299
MboI GATC 3 cut(s) 133, 186, 473
MboII GAAGA 2 cut(s) 345, 478
MflI RGATCY 1 cut(s) 473
MluCI AATT 1 cut(s) 389
Mly113I GGCGCC 1 cut(s) 435
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 5 cut(s) 101, 226, 232, 340, 462
MseI TTAA 2 cut(s) 261, 414
MslI CAYNNNNRTG 2 cut(s) 111, 429
MspA1I CMGCKG 2 cut(s) 156, 529
MspI CCGG 5 cut(s) 95, 192, 276, 407, 438
MspR9I CCNGG 2 cut(s) 95, 319
MvaI CCWGG 1 cut(s) 319
NarI GGCGCC 1 cut(s) 435
NciI CCSGG 1 cut(s) 95
NdeII GATC 3 cut(s) 133, 186, 473
NlaIV GGNNCC 2 cut(s) 396, 436
NmuCI GTSAC 1 cut(s) 85
OliI CACNNNNGTG 1 cut(s) 429
PfeI GAWTC 3 cut(s) 283, 457, 505
PkrI GCNGC 2 cut(s) 158, 451
PleI GAGTC 1 cut(s) 110
PluTI GGCGCC 1 cut(s) 438
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 2 cut(s) 396, 436
PspPI GGNCC 1 cut(s) 394
PsuI RGATCY 1 cut(s) 473
PvuII CAGCTG 2 cut(s) 156, 529
RseI CAYNNNNRTG 2 cut(s) 111, 429
SaqAI TTAA 2 cut(s) 261, 414
SatI GCNGC 2 cut(s) 157, 450
Sau3AI GATC 3 cut(s) 133, 186, 473
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 2 cut(s) 95, 319
SfoI GGCGCC 1 cut(s) 436
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 2 cut(s) 111, 429
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 1 cut(s) 389
SsiI CCGC 3 cut(s) 297, 449, 452
SspDI GGCGCC 1 cut(s) 434
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 2 cut(s) 93, 317
TaaI ACNGT 4 cut(s) 23, 248, 431, 544
TaiI ACGT 4 cut(s) 87, 178, 268, 384
TaqI TCGA 1 cut(s) 378
TasI AATT 1 cut(s) 389
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 3 cut(s) 283, 457, 505
Tru1I TTAA 2 cut(s) 261, 414
Tru9I TTAA 2 cut(s) 261, 414
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 512
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 394
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.