Prupe.1G506300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012979
Physical Location & Seq
Reverse (-)
41817477 .. 41818957
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G506300.1

Sequence Viewer

Length: 669 bp
ATGGGAAATGAATACAATCGCTTCCACCACCAGCACCACCATCATCATCAACATCACAATCTGCAAATGCATCACAGAAGCACATTCTTACCCATGTTGTGTTCAAGGCCATCCATCAAAGGTGTAAGCCTCCCCAACTGCTCTGCTTCCTTCAAAGAAGACCCTTTGTCCCCAAGAATCAGCTGCATGGGCCAAGTCAAGAGAGGCAACAAAGTTAATGGCTTTCCAACGTCTCACAGGCTCACCATCATCAATTCCAAGCATAACAACAGCCCCAACAACCACCACCACAACAACAACAACAATTTCAAGTATTCAAAGCTCAAAAAACTCTTCTCTAGCAAAAGCCTCACTCCTACCACTACAACAACTATCACCACAACCACCAAAACAAACACCAGACGTAGAATACAACAAGTGGTTGTGAATGCTTCAAGTGGGCCCAGGATCAATGGTCAAGATCATCATCATCTTTGTGTTCCAGATATTAACATAGTGGATTTGGATCCTCCTCTGCCTGTGATCAAGAGGGTGCACAAGAAGCCTGAGGCCCAAGAGGAAGAGGTGGGCAGCCTTTGGAAGAGGAGATCCGGTGGGGCTGCATTGGAAGGTTTGCAGCTTAAACTAACCCACCATCCAAGACATCAAAATCAACCCACTACTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.28

Weight (kDa)

10.39

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 455, 500, 513, 582
AgsI TTSAA 5 cut(s) 105, 154, 310, 318, 435
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 3 cut(s) 183, 322, 619
AluI AGCT 3 cut(s) 183, 322, 619
Alw21I GWGCWC 1 cut(s) 537
Alw26I GTCTC 1 cut(s) 237
Alw44I GTGCAC 1 cut(s) 533
AlwI GGATC 4 cut(s) 455, 500, 513, 582
AoxI GGCC 4 cut(s) 107, 190, 440, 549
ApaI GGGCCC 1 cut(s) 444
ApaLI GTGCAC 1 cut(s) 533
ApeKI GCWGC 4 cut(s) 183, 570, 599, 616
AspS9I GGNCC 4 cut(s) 190, 440, 441, 550
AsuHPI GGTGA 2 cut(s) 235, 367
AxyI CCTNAGG 1 cut(s) 546
BaeGI GKGCMC 2 cut(s) 444, 537
BamHI GGATCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 537
BbvI GCAGC 4 cut(s) 170, 582, 586, 628
BccI CCATC 5 cut(s) 48, 118, 122, 254, 642
BciT130I CCWGG 1 cut(s) 445
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 1 cut(s) 339
BisI GCNGC 4 cut(s) 184, 571, 600, 617
BlsI GCNGC 4 cut(s) 185, 572, 601, 618
Bme1390I CCNGG 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 4 cut(s) 190, 440, 441, 550
BmiI GGNNCC 2 cut(s) 442, 507
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 165
BsaBI GATNNNNATC 2 cut(s) 465, 504
BsaJI CCNNGG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 2 cut(s) 577, 607
Bse21I CCTNAGG 1 cut(s) 546
Bse8I GATNNNNATC 2 cut(s) 465, 504
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 110, 634
BseJI GATNNNNATC 2 cut(s) 465, 504
BseMII CTCAG 1 cut(s) 537
BseRI GAGGAG 2 cut(s) 501, 598
BseSI GKGCMC 2 cut(s) 444, 537
BseXI GCAGC 4 cut(s) 170, 582, 586, 628
BshFI GGCC 4 cut(s) 109, 192, 442, 551
BsiHKAI GWGCWC 1 cut(s) 537
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 237
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 433
BsnI GGCC 4 cut(s) 109, 192, 442, 551
Bsp120I GGGCCC 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 444, 537
Bsp143I GATC 5 cut(s) 447, 460, 505, 522, 587
BspANI GGCC 4 cut(s) 109, 192, 442, 551
BspCNI CTCAG 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 442, 507
BspPI GGATC 4 cut(s) 455, 500, 513, 582
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 5 cut(s) 447, 460, 505, 522, 587
Bst2UI CCWGG 1 cut(s) 445
Bst4CI ACNGT 1 cut(s) 664
Bst6I CTCTTC 3 cut(s) 338, 555, 575
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 110, 634
BstKTI GATC 5 cut(s) 450, 463, 508, 525, 590
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 5 cut(s) 447, 460, 505, 522, 587
BstMWI GCNNNNNNNGC 2 cut(s) 189, 541
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 1 cut(s) 443
BstSLI GKGCMC 2 cut(s) 444, 537
BstV1I GCAGC 4 cut(s) 170, 582, 586, 628
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 505, 587
BstYI RGATCY 2 cut(s) 505, 587
Bsu36I CCTNAGG 1 cut(s) 546
BsuRI GGCC 4 cut(s) 109, 192, 442, 551
BtsCI GGATG 2 cut(s) 110, 634
Cfr13I GGNCC 4 cut(s) 190, 440, 441, 550
CviAII CATG 2 cut(s) 94, 187
DdeI CTNAG 1 cut(s) 546
DpnI GATC 5 cut(s) 449, 462, 507, 524, 589
DpnII GATC 5 cut(s) 447, 460, 505, 522, 587
DriI GACNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 3 cut(s) 338, 555, 575
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 3 cut(s) 338, 555, 575
Eco24I GRGCYC 1 cut(s) 444
Eco81I CCTNAGG 1 cut(s) 546
EcoRII CCWGG 1 cut(s) 443
EcoT22I ATGCAT 1 cut(s) 72
EcoT38I GRGCYC 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 97, 190
FaiI YATR 4 cut(s) 95, 188, 264, 494
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 93, 186
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 4 cut(s) 184, 571, 600, 617
FokI GGATG 2 cut(s) 97, 621
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 4 cut(s) 184, 571, 600, 617
FspBI CTAG 1 cut(s) 339
GluI GCNGC 4 cut(s) 184, 571, 600, 617
HaeIII GGCC 4 cut(s) 109, 192, 442, 551
HapII CCGG 1 cut(s) 591
Hin1II CATG 2 cut(s) 97, 190
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 591
HphI GGTGA 2 cut(s) 235, 367
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 1 cut(s) 668
Hpy188III TCNNGA 4 cut(s) 199, 458, 482, 526
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 2 cut(s) 160, 602
HpyCH4III ACNGT 1 cut(s) 664
HpyCH4IV ACGT 2 cut(s) 230, 403
HpyCH4V TGCA 6 cut(s) 64, 70, 186, 535, 602, 616
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 541
HpyF3I CTNAG 1 cut(s) 546
HpySE526I ACGT 2 cut(s) 230, 403
Hsp92II CATG 2 cut(s) 97, 190
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 5 cut(s) 447, 460, 505, 522, 587
LpnPI CCDG 9 cut(s) 44, 223, 412, 430, 457, 495, 531, 558, 604
Lsp1109I GCAGC 4 cut(s) 170, 582, 586, 628
LweI GCATC 1 cut(s) 79
MaeI CTAG 1 cut(s) 339
MaeII ACGT 2 cut(s) 230, 403
MalI GATC 5 cut(s) 449, 462, 507, 524, 589
MboI GATC 5 cut(s) 447, 460, 505, 522, 587
MboII GAAGA 4 cut(s) 170, 325, 572, 592
MflI RGATCY 2 cut(s) 505, 587
MhlI GDGCHC 2 cut(s) 444, 537
MluCI AATT 2 cut(s) 253, 304
MmeI TCCRAC 1 cut(s) 251
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 3 cut(s) 216, 489, 621
MslI CAYNNNNRTG 1 cut(s) 474
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 1 cut(s) 591
MspR9I CCNGG 1 cut(s) 445
Mva1269I GAATGC 1 cut(s) 433
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 2 cut(s) 189, 541
NdeII GATC 5 cut(s) 447, 460, 505, 522, 587
NlaIII CATG 2 cut(s) 97, 190
NlaIV GGNNCC 2 cut(s) 442, 507
NsiI ATGCAT 1 cut(s) 72
PctI GAATGC 1 cut(s) 433
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 4 cut(s) 185, 572, 601, 618
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 2 cut(s) 442, 507
PspOMI GGGCCC 1 cut(s) 440
PspPI GGNCC 4 cut(s) 190, 440, 441, 550
PsuI RGATCY 2 cut(s) 505, 587
PvuII CAGCTG 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 3 cut(s) 216, 489, 621
SatI GCNGC 4 cut(s) 184, 571, 600, 617
Sau3AI GATC 5 cut(s) 447, 460, 505, 522, 587
Sau96I GGNCC 4 cut(s) 190, 440, 441, 550
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 2 cut(s) 444, 537
SetI ASST 8 cut(s) 124, 185, 233, 324, 406, 567, 613, 621
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 474
Sse9I AATT 2 cut(s) 253, 304
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 443
TaaI ACNGT 1 cut(s) 664
TaiI ACGT 2 cut(s) 233, 406
TasI AATT 2 cut(s) 253, 304
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 216, 489, 621
Tru9I TTAA 3 cut(s) 216, 489, 621
TseI GCWGC 4 cut(s) 183, 570, 599, 616
TspDTI ATGAA 1 cut(s) 24
VneI GTGCAC 1 cut(s) 533
XspI CTAG 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.