pycom08g14800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012979
Physical Location & Seq
Reverse (-)
14227864 .. 14228544
681 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14800.1

Sequence Viewer

Length: 681 bp
ATGGCAAGCGAATACAACCGCTTCCGTCACCACCGCCACAATCAAAACCTGCATATGCATAATCATCAGAGAAGCATATTCTTGCCCATGTTATGTTCGAGACCATCCATCAAAGATGTGAGGCTTCCAAAGTCGGCTTCTGTAAAAGAAGACGCTTTGTCCCCAAGAATCAGTTGCATGGACCAAGTGAAAAGAAGCAACAAGGTCACTGGCTTTCCAACCCCTCTCGCCACTCATAGACTACTCACCATCTCCTCAAACCCTATTTCCAAGGACAATATCAGCAGCCCCAACAACCACCACCACAACCACCTCAAGTACTCCAAGCTCAACAAACGCTTCTCTGGCAAAAACCTCAACAACCCTAATGCCGCAGCCGGCGCCACCACCACAACAAGTACTACAAACACGACCACAAGATGTAGTAGAAGGCAAGTGATTGTGAATAGTAAATATGGTGGAAGTGGGCCCAGGATTAATAACAATGGTGCAAATATTAACCTAGTGGATTTAGATCCTCCTCTGCCTGTGATCAAGAGGGTGCCCAAGAAGCCTGCTGAAGAACAAGAAGAGGAGGTGAAGAGTCTTTGGAAGAGGAGATCTGGTGGGGTTGAATTGAAACGTTTGCAGCTTAAACAGATTCACCATCGTAGGCATCTAAACCAATCCATTACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.64

Weight (kDa)

10.89

Isoelectric Point (pI)

68.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 57
AccB1I GGYRCC 2 cut(s) 380, 541
AciI CCGC 3 cut(s) 19, 34, 372
AclI AACGTT 1 cut(s) 622
AclWI GGATC 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 579
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 2 cut(s) 320, 400
AgsI TTSAA 2 cut(s) 614, 619
AhdI GACNNNNNGTC 1 cut(s) 157
AjnI CCWGG 1 cut(s) 470
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 2 cut(s) 328, 631
AluI AGCT 2 cut(s) 328, 631
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 509
AoxI GGCC 1 cut(s) 467
ApaI GGGCCC 1 cut(s) 471
ApeKI GCWGC 3 cut(s) 285, 374, 628
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 3 cut(s) 181, 467, 468
AsuHPI GGTGA 4 cut(s) 20, 238, 589, 635
AvaII GGWCC 1 cut(s) 181
BaeGI GKGCMC 2 cut(s) 471, 546
BanI GGYRCC 2 cut(s) 380, 541
BanII GRGCYC 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 297, 386, 640
BccI CCATC 4 cut(s) 112, 116, 257, 654
BciT130I CCWGG 1 cut(s) 472
BclI TGATCA 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 599
BisI GCNGC 4 cut(s) 286, 372, 375, 629
BlsI GCNGC 4 cut(s) 287, 373, 376, 630
BmcAI AGTACT 2 cut(s) 320, 400
Bme1390I CCNGG 1 cut(s) 472
Bme18I GGWCC 1 cut(s) 181
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 181, 467, 468
BmiI GGNNCC 3 cut(s) 382, 469, 543
BmrFI CCNGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 664
BpiI GAAGAC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 381
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 270, 470
BsaXI ACNNNNNCTCC 2 cut(s) 589, 619
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 270, 470
BseGI GGATG 1 cut(s) 104
BseJI GATNNNNATC 1 cut(s) 513
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 4 cut(s) 244, 510, 587, 610
BseSI GKGCMC 2 cut(s) 471, 546
BseXI GCAGC 3 cut(s) 297, 386, 640
BshFI GGCC 1 cut(s) 469
BshNI GGYRCC 2 cut(s) 380, 541
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 469
Bso31I GGTCTC 1 cut(s) 94
Bsp120I GGGCCC 1 cut(s) 467
Bsp1286I GDGCHC 2 cut(s) 471, 546
Bsp143I GATC 3 cut(s) 514, 531, 599
BspACI CCGC 3 cut(s) 19, 34, 372
BspANI GGCC 1 cut(s) 469
BspLI GGNNCC 3 cut(s) 382, 469, 543
BspMI ACCTGC 1 cut(s) 57
BspPI GGATC 1 cut(s) 509
BspT107I GGYRCC 2 cut(s) 380, 541
BspTNI GGTCTC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 270, 470
BssMI GATC 3 cut(s) 514, 531, 599
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 1 cut(s) 676
Bst6I CTCTTC 3 cut(s) 564, 575, 587
BstACI GRCGYC 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 7, 379, 555
BstF5I GGATG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 3 cut(s) 517, 534, 602
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 3 cut(s) 514, 531, 599
BstMWI GCNNNNNNNGC 3 cut(s) 345, 380, 550
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 470
BstSLI GKGCMC 2 cut(s) 471, 546
BstV1I GCAGC 3 cut(s) 297, 386, 640
BstV2I GAAGAC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 514, 599
BstYI RGATCY 2 cut(s) 514, 599
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 207
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 3 cut(s) 7, 379, 555
CfoI GCGC 1 cut(s) 383
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 181, 467, 468
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 319, 399
CviAII CATG 2 cut(s) 88, 178
CviJI RGCY 9 cut(s) 124, 137, 213, 288, 328, 377, 469, 553, 631
CviKI_1 RGCY 9 cut(s) 124, 137, 213, 288, 328, 377, 469, 553, 631
CviQI GTAC 2 cut(s) 319, 399
DinI GGCGCC 1 cut(s) 382
DpnI GATC 3 cut(s) 516, 533, 601
DpnII GATC 3 cut(s) 514, 531, 599
DriI GACNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 564, 575, 587
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 3 cut(s) 564, 575, 587
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 471
Eco31I GGTCTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 579
EcoRII CCWGG 1 cut(s) 470
EcoT14I CCWWGG 1 cut(s) 270
EcoT22I ATGCAT 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 471
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 91, 181
FaiI YATR 9 cut(s) 54, 56, 60, 77, 89, 94, 179, 237, 456
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 87, 177
FauNDI CATATG 1 cut(s) 54
FbaI TGATCA 1 cut(s) 531
Fnu4HI GCNGC 4 cut(s) 286, 372, 375, 629
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 4 cut(s) 286, 372, 375, 629
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 382
GluI GCNGC 4 cut(s) 286, 372, 375, 629
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 2 cut(s) 91, 181
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 3 cut(s) 168, 583, 640
HpaII CCGG 1 cut(s) 378
HphI GGTGA 4 cut(s) 20, 238, 589, 635
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 99, 535
HpyAV CCTTC 1 cut(s) 423
HpyCH4III ACNGT 1 cut(s) 676
HpyCH4IV ACGT 1 cut(s) 622
HpyCH4V TGCA 5 cut(s) 52, 58, 177, 491, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 345, 380, 550
HpySE526I ACGT 1 cut(s) 622
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 2 cut(s) 91, 181
HspAI GCGC 1 cut(s) 381
KasI GGCGCC 1 cut(s) 380
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 531
Kzo9I GATC 3 cut(s) 514, 531, 599
LpnPI CCDG 9 cut(s) 62, 195, 330, 391, 457, 484, 540, 567, 588
Lsp1109I GCAGC 3 cut(s) 297, 386, 640
LweI GCATC 1 cut(s) 664
MaeI CTAG 1 cut(s) 503
MaeII ACGT 1 cut(s) 622
MaeIII GTNAC 2 cut(s) 26, 205
MalI GATC 3 cut(s) 516, 533, 601
MboI GATC 3 cut(s) 514, 531, 599
MboII GAAGA 5 cut(s) 161, 572, 581, 592, 604
MflI RGATCY 2 cut(s) 514, 599
MhlI GDGCHC 2 cut(s) 471, 546
MluCI AATT 1 cut(s) 614
Mly113I GGCGCC 1 cut(s) 381
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 1 cut(s) 242
Mph1103I ATGCAT 1 cut(s) 60
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 3 cut(s) 477, 498, 633
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
MwoI GCNNNNNNNGC 3 cut(s) 345, 380, 550
NaeI GCCGGC 1 cut(s) 379
NarI GGCGCC 1 cut(s) 381
NdeI CATATG 1 cut(s) 54
NdeII GATC 3 cut(s) 514, 531, 599
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 2 cut(s) 91, 181
NlaIV GGNNCC 3 cut(s) 382, 469, 543
NmuCI GTSAC 2 cut(s) 26, 205
NsiI ATGCAT 1 cut(s) 60
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 168, 640
PkrI GCNGC 4 cut(s) 287, 373, 376, 630
PleI GAGTC 1 cut(s) 591
PluTI GGCGCC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 591
PshBI ATTAAT 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspN4I GGNNCC 3 cut(s) 382, 469, 543
PspOMI GGGCCC 1 cut(s) 467
PspPI GGNCC 3 cut(s) 181, 467, 468
PsuI RGATCY 2 cut(s) 514, 599
RsaI GTAC 2 cut(s) 320, 400
RsaNI GTAC 2 cut(s) 319, 399
SaqAI TTAA 3 cut(s) 477, 498, 633
SatI GCNGC 4 cut(s) 286, 372, 375, 629
Sau3AI GATC 3 cut(s) 514, 531, 599
Sau96I GGNCC 3 cut(s) 181, 467, 468
ScaI AGTACT 2 cut(s) 320, 400
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 1 cut(s) 472
SduI GDGCHC 2 cut(s) 471, 546
SetI ASST 9 cut(s) 51, 207, 315, 330, 357, 504, 579, 625, 633
SfaNI GCATC 1 cut(s) 664
SfoI GGCGCC 1 cut(s) 382
SinI GGWCC 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 1 cut(s) 614
SsiI CCGC 3 cut(s) 19, 34, 372
SspDI GGCGCC 1 cut(s) 380
SspI AATATT 1 cut(s) 496
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 470
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 676
TaiI ACGT 1 cut(s) 625
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 614
TatI WGTACW 2 cut(s) 318, 398
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 168, 640
Tru1I TTAA 3 cut(s) 477, 498, 633
Tru9I TTAA 3 cut(s) 477, 498, 633
TscAI CASTG 1 cut(s) 214
TseFI GTSAC 2 cut(s) 26, 205
TseI GCWGC 3 cut(s) 285, 374, 628
Tsp45I GTSAC 2 cut(s) 26, 205
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 477
XspI CTAG 1 cut(s) 503
ZrmI AGTACT 2 cut(s) 320, 400
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.