Rroxscaffold_3G00219590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012979
Physical Location & Seq
Reverse (-)
1695231 .. 1696602
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00219590.1

Sequence Viewer

Length: 624 bp
ATGGCCAATGAGTACAATCGCTTCAACCATCACCACCACCACTACCACCACCACCACCATCACCATCACGCTCACGCTCACGCTCATCTGCATATAAATCACGGAGGCACATTCTTGCCCATGTTATGTTCAAGACCATCGATCAAAGATGTCCAGGTTCCAAGTAATGCTTTCTTCTCCAATGACTCTGTGTCTCCAAAAATCAGTTGTATCGGCCAAGTTAAGAGGAACAACAAAGTTTCTGGCTTCCCAATCACCTCTCAAACTAACAACAGTAGCAACAATATCAAGTATTCCAAGCTCAAGAAACTCTTCTCGGGCAAAAACCTCACCGCCGCCACTCCAACTAAAACCGCCACTGCTGCCACCGCCACCAGCTGTCCAAGCAGAAGCAGGAGACCTCAAGTGAGTAATGTGAAACAAGGTCATTGTGCTATTGCAACAACAATCAACTTAGTTGATCTGGATCCTCCTCTACCTGTGATCAAGAGAGTACATAAATCTCCCCAAGAAGGAGAGGAGGACAGTCTTTGGAAGAGAAGATCTGGTGGAGCTGCACTCAAAGGTTTGCAGCTGAAACAAGTTCACCATCCTAGACATCAAACTCAATCCACAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.01

Weight (kDa)

10.24

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 333, 336, 354, 369
AclWI GGATC 2 cut(s) 461, 474
AcoI YGGCCR 2 cut(s) 3, 214
AfaI GTAC 2 cut(s) 14, 495
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 2 cut(s) 25, 132
AhdI GACNNNNNGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 153
AleI CACNNNNGTG 1 cut(s) 617
AluBI AGCT 4 cut(s) 301, 378, 554, 574
AluI AGCT 4 cut(s) 301, 378, 554, 574
Alw26I GTCTC 2 cut(s) 198, 391
AlwI GGATC 2 cut(s) 461, 474
Ama87I CYCGRG 1 cut(s) 316
AoxI GGCC 2 cut(s) 3, 214
ApeKI GCWGC 3 cut(s) 362, 554, 571
Asp700I GAANNNNTTC 1 cut(s) 311
AsuHPI GGTGA 5 cut(s) 23, 53, 247, 322, 578
AvaI CYCGRG 1 cut(s) 316
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 466
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 349, 541, 583
BccI CCATC 5 cut(s) 36, 66, 72, 145, 597
BciT130I CCWGG 1 cut(s) 155
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 198, 391
BfaI CTAG 1 cut(s) 594
BglII AGATCT 1 cut(s) 542
BisI GCNGC 4 cut(s) 336, 363, 555, 572
BlsI GCNGC 4 cut(s) 337, 364, 556, 573
Bme1390I CCNGG 1 cut(s) 155
BmeRI GACNNNNNGTC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 316
BmiI GGNNCC 2 cut(s) 159, 468
BmrFI CCNGG 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 543, 575
BpuEI CTTGAG 2 cut(s) 287, 387
Bsa29I ATCGAT 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 155
BseCI ATCGAT 1 cut(s) 140
BseGI GGATG 1 cut(s) 589
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 1 cut(s) 512
BseRI GAGGAG 2 cut(s) 462, 533
BseXI GCAGC 3 cut(s) 349, 541, 583
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 2 cut(s) 5, 216
BshVI ATCGAT 1 cut(s) 140
BsiHKCI CYCGRG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 2 cut(s) 198, 391
BsnI GGCC 2 cut(s) 5, 216
Bso31I GGTCTC 1 cut(s) 391
BsoBI CYCGRG 1 cut(s) 316
Bsp143I GATC 5 cut(s) 141, 460, 466, 483, 542
BspACI CCGC 4 cut(s) 333, 336, 354, 369
BspANI GGCC 2 cut(s) 5, 216
BspDI ATCGAT 1 cut(s) 140
BspLI GGNNCC 2 cut(s) 159, 468
BspPI GGATC 2 cut(s) 461, 474
BspTNI GGTCTC 1 cut(s) 391
BssMI GATC 5 cut(s) 141, 460, 466, 483, 542
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 275, 527
Bst6I CTCTTC 2 cut(s) 317, 530
BstDEI CTNAG 1 cut(s) 454
BstF5I GGATG 1 cut(s) 589
BstKTI GATC 5 cut(s) 144, 463, 469, 486, 545
BstMAI GTCTC 2 cut(s) 198, 391
BstMBI GATC 5 cut(s) 141, 460, 466, 483, 542
BstMWI GCNNNNNNNGC 3 cut(s) 362, 368, 384
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 349, 541, 583
BstX2I RGATCY 2 cut(s) 466, 542
BstYI RGATCY 2 cut(s) 466, 542
Bsu15I ATCGAT 1 cut(s) 140
BsuRI GGCC 2 cut(s) 5, 216
BsuTUI ATCGAT 1 cut(s) 140
BtsCI GGATG 1 cut(s) 589
BtsI GCAGTG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 140
Csp6I GTAC 2 cut(s) 13, 494
CviAII CATG 1 cut(s) 121
CviJI RGCY 7 cut(s) 5, 216, 246, 301, 378, 554, 574
CviKI_1 RGCY 7 cut(s) 5, 216, 246, 301, 378, 554, 574
CviQI GTAC 2 cut(s) 13, 494
DdeI CTNAG 1 cut(s) 454
DpnI GATC 5 cut(s) 143, 462, 468, 485, 544
DpnII GATC 5 cut(s) 141, 460, 466, 483, 542
DriI GACNNNNNGTC 1 cut(s) 190
EaeI YGGCCR 2 cut(s) 3, 214
Eam1104I CTCTTC 2 cut(s) 317, 530
Eam1105I GACNNNNNGTC 1 cut(s) 190
EarI CTCTTC 2 cut(s) 317, 530
Eco31I GGTCTC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 124
FaiI YATR 5 cut(s) 93, 95, 122, 127, 498
FalI AAGNNNNNCTT 4 cut(s) 154, 186, 296, 328
FatI CATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 4 cut(s) 336, 363, 555, 572
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 4 cut(s) 336, 363, 555, 572
FspBI CTAG 1 cut(s) 594
GluI GCNGC 4 cut(s) 336, 363, 555, 572
HaeIII GGCC 2 cut(s) 5, 216
Hin1II CATG 1 cut(s) 124
HinfI GANTC 1 cut(s) 185
HphI GGTGA 5 cut(s) 23, 53, 247, 322, 578
Hpy166II GTNNAC 1 cut(s) 586
Hpy188III TCNNGA 4 cut(s) 132, 304, 464, 487
Hpy8I GTNNAC 1 cut(s) 586
HpyAV CCTTC 1 cut(s) 506
HpyCH4III ACNGT 2 cut(s) 275, 527
HpyCH4V TGCA 4 cut(s) 91, 440, 557, 571
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 368, 384
HpyF3I CTNAG 1 cut(s) 454
Hsp92II CATG 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 5 cut(s) 141, 460, 466, 483, 542
LmnI GCTCC 1 cut(s) 551
LpnPI CCDG 8 cut(s) 140, 167, 228, 379, 388, 449, 492, 531
Lsp1109I GCAGC 3 cut(s) 349, 541, 583
MaeI CTAG 1 cut(s) 594
MalI GATC 5 cut(s) 143, 462, 468, 485, 544
MboI GATC 5 cut(s) 141, 460, 466, 483, 542
MboII GAAGA 4 cut(s) 166, 304, 547, 552
MflI RGATCY 2 cut(s) 466, 542
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 368
MnlI CCTC 9 cut(s) 98, 219, 268, 338, 411, 480, 483, 511, 514
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 311
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 617
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 378, 574
MspR9I CCNGG 1 cut(s) 155
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 362, 368, 384
NdeII GATC 5 cut(s) 141, 460, 466, 483, 542
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 159, 468
OliI CACNNNNGTG 1 cut(s) 617
PdmI GAANNNNTTC 1 cut(s) 311
PkrI GCNGC 4 cut(s) 337, 364, 556, 573
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 159, 468
PsuI RGATCY 2 cut(s) 466, 542
PvuII CAGCTG 2 cut(s) 378, 574
RsaI GTAC 2 cut(s) 14, 495
RsaNI GTAC 2 cut(s) 13, 494
RseI CAYNNNNRTG 1 cut(s) 617
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 4 cut(s) 336, 363, 555, 572
Sau3AI GATC 5 cut(s) 141, 460, 466, 483, 542
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 617
SmlI CTYRAG 2 cut(s) 302, 402
SmoI CTYRAG 2 cut(s) 302, 402
SsiI CCGC 4 cut(s) 333, 336, 354, 369
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 275, 527
TaqI TCGA 1 cut(s) 140
TatI WGTACW 2 cut(s) 12, 493
TauI GCSGC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 364
TseI GCWGC 3 cut(s) 362, 554, 571
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.