FvH4_5g38830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012979
Physical Location & Seq
Forward (+)
28703895 .. 28705219
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38830.t1

Sequence Viewer

Length: 624 bp
ATGGGAAACGAGTATAACCGCTTTAACCATCACCACCAGCACTACCACCACCACCATCATCATGTACACGCTCATCATCTGCATATAAATCACAGAGGCACATTCTTGCCGATGCTATGTTCAAGACCATCAATCAAAGACGTCCAGGTTCCAAGTGTTTCCTTCTCCACCGACTCTGTATCTCCAAGAATCAGTTGTATGGGCCAAGTTAAGAGGAGCAACAAAGTTTCGGGCTATCCGATCACCACTCAAGCTACCAACAGCAGCAACAATATCAAGTATTCCAAGCTCAAGAAACTCTTCTCCGGCAAACACCTCACCCCCCGTACCACTCCAACTAAAACGACCACCGCCACCGCAACTGCTGCCACCGCCACCAGCTGTCCAATAAGCAGAAGCAGGAGACCACAAGTGAGTAATGTGAGACAAGGTCATTGTGTTGCAACAACAATCAACTTAGCTGAATTGGATCCTCCTCTACCTGTGATCAAGAGAGTGCAGAGATCTCCCCAACAAGGAGAGGAGAGTCTTTATAAGAGAAGATCTGGTGGGGCTGCACTCAAAGGTTTGCAGCTGAAACAAGTTCATCTTCCTAGACTTCAAACTCAATCCACAAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.1

Weight (kDa)

10.75

Isoelectric Point (pI)

62.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 534
AatII GACGTC 1 cut(s) 144
AciI CCGC 4 cut(s) 19, 351, 357, 372
AclWI GGATC 2 cut(s) 464, 477
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 2 cut(s) 66, 328
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 2 cut(s) 123, 602
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 5 cut(s) 254, 289, 381, 461, 574
AluI AGCT 5 cut(s) 254, 289, 381, 461, 574
Alw26I GTCTC 2 cut(s) 397, 418
AlwI GGATC 2 cut(s) 464, 477
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 4 cut(s) 264, 365, 554, 571
Asp700I GAANNNNTTC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 3 cut(s) 23, 235, 310
BamHI GGATCC 1 cut(s) 469
BbvI GCAGC 4 cut(s) 276, 352, 541, 583
BccI CCATC 3 cut(s) 36, 63, 136
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 397, 418
BfaI CTAG 1 cut(s) 594
BglII AGATCT 2 cut(s) 503, 542
BisI GCNGC 4 cut(s) 265, 366, 555, 572
BlsI GCNGC 4 cut(s) 266, 367, 556, 573
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 2 cut(s) 150, 471
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 234, 275
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 397
Bsc4I CCNNNNNNNGG 1 cut(s) 515
BseBI CCWGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 515
BseRI GAGGAG 3 cut(s) 229, 465, 536
BseXI GCAGC 4 cut(s) 276, 352, 541, 583
BsgI GTGCAG 2 cut(s) 518, 540
BshFI GGCC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 397, 418
BsnI GGCC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 397
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 5 cut(s) 240, 469, 486, 503, 542
BspACI CCGC 4 cut(s) 19, 351, 357, 372
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 150, 471
BspPI GGATC 2 cut(s) 464, 477
BspTNI GGTCTC 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 64
BssMI GATC 5 cut(s) 240, 469, 486, 503, 542
BssNI GRCGYC 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 305
BstACI GRCGYC 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 457
BstKTI GATC 5 cut(s) 243, 472, 489, 506, 545
BstMAI GTCTC 2 cut(s) 397, 418
BstMBI GATC 5 cut(s) 240, 469, 486, 503, 542
BstMWI GCNNNNNNNGC 2 cut(s) 365, 371
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 276, 352, 541, 583
BstX2I RGATCY 3 cut(s) 469, 503, 542
BstYI RGATCY 3 cut(s) 469, 503, 542
BsuRI GGCC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 65, 327
CviAII CATG 1 cut(s) 62
CviJI RGCY 8 cut(s) 204, 234, 254, 289, 381, 461, 554, 574
CviKI_1 RGCY 8 cut(s) 204, 234, 254, 289, 381, 461, 554, 574
CviQI GTAC 2 cut(s) 65, 327
DdeI CTNAG 1 cut(s) 457
DpnI GATC 5 cut(s) 242, 471, 488, 505, 544
DpnII GATC 5 cut(s) 240, 469, 486, 503, 542
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 65
FaiI YATR 8 cut(s) 15, 63, 84, 86, 118, 200, 534, 622
FalI AAGNNNNNCTT 4 cut(s) 284, 316, 573, 605
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 265, 366, 555, 572
Fsp4HI GCNGC 4 cut(s) 265, 366, 555, 572
FspBI CTAG 1 cut(s) 594
GluI GCNGC 4 cut(s) 265, 366, 555, 572
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 306
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 1 cut(s) 65
HinfI GANTC 3 cut(s) 173, 189, 526
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 23, 235, 310
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 3 cut(s) 123, 292, 490
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 5 cut(s) 82, 443, 499, 557, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 371
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 5 cut(s) 240, 469, 486, 503, 542
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 8 cut(s) 50, 131, 158, 319, 385, 391, 495, 531
Lsp1109I GCAGC 4 cut(s) 276, 352, 541, 583
LweI GCATC 1 cut(s) 102
MaeI CTAG 1 cut(s) 594
MaeII ACGT 1 cut(s) 141
MalI GATC 5 cut(s) 242, 471, 488, 505, 544
MboI GATC 5 cut(s) 240, 469, 486, 503, 542
MboII GAAGA 3 cut(s) 292, 552, 581
MflI RGATCY 3 cut(s) 469, 503, 542
MluCI AATT 1 cut(s) 464
MlyI GAGTC 2 cut(s) 167, 535
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 6 cut(s) 89, 207, 326, 483, 486, 514
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 2 cut(s) 24, 210
MslI CAYNNNNRTG 1 cut(s) 60
MspA1I CMGCKG 2 cut(s) 381, 574
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 365, 371
NdeII GATC 5 cut(s) 240, 469, 486, 503, 542
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 150, 471
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 429
PkrI GCNGC 4 cut(s) 266, 367, 556, 573
PleI GAGTC 2 cut(s) 167, 534
PpsI GAGTC 2 cut(s) 167, 534
PsiI TTATAA 1 cut(s) 534
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 150, 471
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 3 cut(s) 469, 503, 542
PsyI GACNNNGTC 1 cut(s) 429
PvuII CAGCTG 2 cut(s) 381, 574
RsaI GTAC 2 cut(s) 66, 328
RsaNI GTAC 2 cut(s) 65, 327
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 24, 210
SatI GCNGC 4 cut(s) 265, 366, 555, 572
Sau3AI GATC 5 cut(s) 240, 469, 486, 503, 542
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 2 cut(s) 167, 535
ScrFI CCNGG 1 cut(s) 146
SfaNI GCATC 1 cut(s) 102
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 2 cut(s) 249, 290
SmoI CTYRAG 2 cut(s) 249, 290
Sse9I AATT 1 cut(s) 464
SsiI CCGC 4 cut(s) 19, 351, 357, 372
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 144
TasI AATT 1 cut(s) 464
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 2 cut(s) 24, 210
Tru9I TTAA 2 cut(s) 24, 210
TseI GCWGC 4 cut(s) 264, 365, 554, 571
TspDTI ATGAA 1 cut(s) 575
Tth111I GACNNNGTC 1 cut(s) 429
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 594
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.