pycom08g14810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012979
Physical Location & Seq
Reverse (-)
14234025 .. 14234708
684 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g14810.1

Sequence Viewer

Length: 684 bp
ATGGCAAGCGAATACAGCCGCTTCCATCACCACCACCGCCACAGTCAAAATCTGCATATGCATAATCATCAGAGATGCACATTCTTGCCCATGTTATGTTCGAGACCATCCATCAAAGATGTGAGGCTTCCAAAGTCGGCTTCTGTAAAAGAAGACGCTTTGTCCCCAAGAATCAGTTGCATGGGCCAAGTGAAAAGAAGCAACAAGGTCACTGGCTTTCCAACCCCTCTCGCCACTCATAGACTACTCACCATCTCCTCAAACCCTAATTCCAAGGACAATATCAGCAGCCCCAACAACCACCACCACAACCACCTCAAGTACTCCAAGCTCAAGAAGCGCTTCTCTGGCAAAAACCTCAACAACCCTAATGCCGCAGCCGCCGCCACTACCACAACAACCACTAGAAACACCACCACAAGATGTAGTAGAAGGCAAGTGATTGTGAATAGTAAAAATGGTGGAAGTGGGCCCGGGAGTAGTAACATTGGTGCAAATATTAACCTAGTGGATTTAGATCCTCCTCTGCCTGTGATAAAGAGGGTGCTCAAGGAGCCTGCTGAAGAACAAGAAGAGGAGGTGAAGAGTCTTTGGAAGAGGAGATCTGGTGGGGTTGAATTGAAACGTTTGCAGCTTAAACAGATTCACCATCGTAGGCATCTAAATCAATCCATTACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.56

Weight (kDa)

10.76

Isoelectric Point (pI)

72.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 19, 37, 375, 381, 384
AclI AACGTT 1 cut(s) 625
AclWI GGATC 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 1 cut(s) 323
AfeI AGCGCT 1 cut(s) 341
AgsI TTSAA 2 cut(s) 617, 622
AhdI GACNNNNNGTC 1 cut(s) 160
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 2 cut(s) 331, 634
AluI AGCT 2 cut(s) 331, 634
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 473
Aor51HI AGCGCT 1 cut(s) 341
AoxI GGCC 2 cut(s) 184, 470
ApaI GGGCCC 1 cut(s) 474
ApeKI GCWGC 3 cut(s) 288, 377, 631
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 3 cut(s) 184, 470, 471
AsuC2I CCSGG 2 cut(s) 474, 475
AsuHPI GGTGA 4 cut(s) 20, 241, 592, 638
AvaI CYCGRG 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 3 cut(s) 300, 389, 643
BccI CCATC 5 cut(s) 33, 115, 119, 260, 657
BcnI CCSGG 2 cut(s) 474, 475
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 405, 506
BfoI RGCGCY 1 cut(s) 343
BglII AGATCT 1 cut(s) 602
BisI GCNGC 7 cut(s) 19, 289, 375, 378, 381, 384, 632
BlsI GCNGC 7 cut(s) 20, 290, 376, 379, 382, 385, 633
BmcAI AGTACT 1 cut(s) 323
Bme1390I CCNGG 2 cut(s) 474, 475
BmeRI GACNNNNNGTC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 473
BmgT120I GGNCC 3 cut(s) 184, 470, 471
BmiI GGNNCC 2 cut(s) 472, 555
BmrFI CCNGG 2 cut(s) 474, 475
BmsI GCATC 2 cut(s) 65, 667
BpiI GAAGAC 1 cut(s) 159
BpuEI CTTGAG 3 cut(s) 302, 317, 533
BpuMI CCSGG 2 cut(s) 474, 475
BsaBI GATNNNNATC 1 cut(s) 516
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 2 cut(s) 273, 473
BsaXI ACNNNNNCTCC 2 cut(s) 592, 622
Bse1I ACTGG 1 cut(s) 217
Bse8I GATNNNNATC 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 273, 473
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 516
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 4 cut(s) 247, 513, 590, 613
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 3 cut(s) 300, 389, 643
BshFI GGCC 2 cut(s) 186, 472
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 473
BsiSI CCGG 1 cut(s) 474
BslFI GGGAC 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 2 cut(s) 186, 472
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 473
Bsp120I GGGCCC 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 474, 549
Bsp143I GATC 2 cut(s) 517, 602
BspACI CCGC 5 cut(s) 19, 37, 375, 381, 384
BspANI GGCC 2 cut(s) 186, 472
BspLI GGNNCC 2 cut(s) 472, 555
BspPI GGATC 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 273, 473
BssMI GATC 2 cut(s) 517, 602
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 44, 679
Bst6I CTCTTC 3 cut(s) 567, 578, 590
BstC8I GCNNGC 2 cut(s) 7, 558
BstF5I GGATG 1 cut(s) 107
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 2 cut(s) 520, 605
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 2 cut(s) 517, 602
BstMWI GCNNNNNNNGC 6 cut(s) 15, 337, 348, 380, 383, 553
BstSCI CCNGG 2 cut(s) 472, 473
BstSLI GKGCMC 1 cut(s) 474
BstV1I GCAGC 3 cut(s) 300, 389, 643
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 2 cut(s) 517, 602
BstYI RGATCY 2 cut(s) 517, 602
BsuRI GGCC 2 cut(s) 186, 472
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 7, 558
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 3 cut(s) 184, 470, 471
Cfr9I CCCGGG 1 cut(s) 473
CseI GACGC 1 cut(s) 164
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 91, 181
CviQI GTAC 1 cut(s) 322
DpnI GATC 2 cut(s) 519, 604
DpnII GATC 2 cut(s) 517, 602
DriI GACNNNNNGTC 1 cut(s) 160
Eam1104I CTCTTC 3 cut(s) 567, 578, 590
Eam1105I GACNNNNNGTC 1 cut(s) 160
EarI CTCTTC 3 cut(s) 567, 578, 590
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 474
Eco31I GGTCTC 1 cut(s) 97
Eco47III AGCGCT 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 582
Eco88I CYCGRG 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 94, 184
FaiI YATR 7 cut(s) 57, 59, 63, 92, 97, 182, 240
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 90, 180
FauNDI CATATG 1 cut(s) 57
Fnu4HI GCNGC 7 cut(s) 19, 289, 375, 378, 381, 384, 632
FokI GGATG 1 cut(s) 94
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 7 cut(s) 19, 289, 375, 378, 381, 384, 632
FspBI CTAG 2 cut(s) 405, 506
GlaI GCGC 1 cut(s) 341
GluI GCNGC 7 cut(s) 19, 289, 375, 378, 381, 384, 632
HaeII RGCGCY 1 cut(s) 343
HaeIII GGCC 2 cut(s) 186, 472
HapII CCGG 1 cut(s) 474
HgaI GACGC 1 cut(s) 164
HhaI GCGC 1 cut(s) 342
Hin1II CATG 2 cut(s) 94, 184
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HinfI GANTC 3 cut(s) 171, 586, 643
HpaII CCGG 1 cut(s) 474
HphI GGTGA 4 cut(s) 20, 241, 592, 638
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 102, 334
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 2 cut(s) 44, 679
HpyCH4IV ACGT 1 cut(s) 625
HpyCH4V TGCA 6 cut(s) 55, 61, 78, 180, 494, 631
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 337, 348, 380, 383, 553
HpySE526I ACGT 1 cut(s) 625
Hsp92II CATG 2 cut(s) 94, 184
HspAI GCGC 1 cut(s) 340
Kzo9I GATC 2 cut(s) 517, 602
LmnI GCTCC 1 cut(s) 553
LpnPI CCDG 6 cut(s) 198, 333, 487, 543, 570, 591
Lsp1109I GCAGC 3 cut(s) 300, 389, 643
LweI GCATC 2 cut(s) 65, 667
MaeI CTAG 2 cut(s) 405, 506
MaeII ACGT 1 cut(s) 625
MaeIII GTNAC 2 cut(s) 208, 482
MalI GATC 2 cut(s) 519, 604
MboI GATC 2 cut(s) 517, 602
MboII GAAGA 5 cut(s) 164, 575, 584, 595, 607
MflI RGATCY 2 cut(s) 517, 602
MhlI GDGCHC 2 cut(s) 474, 549
MluCI AATT 2 cut(s) 268, 617
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 245
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 2 cut(s) 501, 636
MspI CCGG 1 cut(s) 474
MspR9I CCNGG 2 cut(s) 474, 475
MwoI GCNNNNNNNGC 6 cut(s) 15, 337, 348, 380, 383, 553
NciI CCSGG 2 cut(s) 474, 475
NdeI CATATG 1 cut(s) 57
NdeII GATC 2 cut(s) 517, 602
NlaIII CATG 2 cut(s) 94, 184
NlaIV GGNNCC 2 cut(s) 472, 555
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 171, 643
PkrI GCNGC 7 cut(s) 20, 290, 376, 379, 382, 385, 633
PleI GAGTC 1 cut(s) 594
PpsI GAGTC 1 cut(s) 594
Psp1406I AACGTT 1 cut(s) 625
PspN4I GGNNCC 2 cut(s) 472, 555
PspOMI GGGCCC 1 cut(s) 470
PspPI GGNCC 3 cut(s) 184, 470, 471
PsuI RGATCY 2 cut(s) 517, 602
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 501, 636
SatI GCNGC 7 cut(s) 19, 289, 375, 378, 381, 384, 632
Sau3AI GATC 2 cut(s) 517, 602
Sau96I GGNCC 3 cut(s) 184, 470, 471
ScaI AGTACT 1 cut(s) 323
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 2 cut(s) 474, 475
SduI GDGCHC 2 cut(s) 474, 549
SetI ASST 8 cut(s) 210, 318, 333, 360, 507, 582, 628, 636
SfaNI GCATC 2 cut(s) 65, 667
SmaI CCCGGG 1 cut(s) 475
SmlI CTYRAG 3 cut(s) 317, 332, 548
SmoI CTYRAG 3 cut(s) 317, 332, 548
Sse9I AATT 2 cut(s) 268, 617
SsiI CCGC 5 cut(s) 19, 37, 375, 381, 384
SspI AATATT 1 cut(s) 499
SspMI CTAG 2 cut(s) 405, 506
StyD4I CCNGG 2 cut(s) 472, 473
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 44, 679
TaiI ACGT 1 cut(s) 628
TaqI TCGA 1 cut(s) 101
TasI AATT 2 cut(s) 268, 617
TatI WGTACW 1 cut(s) 321
TauI GCSGC 4 cut(s) 21, 377, 383, 386
TfiI GAWTC 2 cut(s) 171, 643
Tru1I TTAA 2 cut(s) 501, 636
Tru9I TTAA 2 cut(s) 501, 636
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 3 cut(s) 288, 377, 631
Tsp45I GTSAC 1 cut(s) 208
TspMI CCCGGG 1 cut(s) 473
TspRI CASTG 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 473
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 405, 506
ZrmI AGTACT 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.