Rh7AG493700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012979
Physical Location & Seq
Forward (+)
69421061 .. 69423123
2063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG493700.1

Sequence Viewer

Length: 618 bp
ATGGCCAATGAGTACAATCGCTTCAACCATCACCACCACCACTACTACCACCACCACCAGCACCATCACGCTCACGCTCATCTGCATATAAATCACAGAGGCACATTCTTGCCCATGTTATGTTCAAGACCATCGATCAAAGATGTCCAGGTTCCAAGTAATGCTTTCTTCTCCAATGACTCTGTGTCACCAAAAATCAGTTGTATAGGCCAAGTTAAGAGGAGCAACAAAGTTTCTGGCTTCCCAATCACCTCTCAAACTAACAATAGCAGCAACAATATCAAGTATTCCAAGCTCAAGAAACTCTTCTCGGGCAAAAACCTCACCATCGCCACTCCAACTAAAACCGCCACTGCTGCCACCGCCACCAGCTGTCCAAGCAGAAGCAGGAGACCACAAGTGAGTAATGTGAAACAAGATCATTGTGCTATTACAACAACAATCAACTTAGTTGATCTGGATCCTCCTCTACCTGTGATCAAGAGAGTACATAAACCTCCCCAAGAAGGAGAGGAGGACAGTCTTTGGAAGAGAAGATCTGGTGGGGCTGCACTCAAAGGTTTGCAGCTGAAACAAGTTCACCATCCTAGACATCAAACTCAATCCACAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.03

Weight (kDa)

10.18

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 348, 363
AclWI GGATC 2 cut(s) 455, 468
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 14, 489
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 2 cut(s) 25, 126
AhdI GACNNNNNGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 611
AluBI AGCT 3 cut(s) 295, 372, 568
AluI AGCT 3 cut(s) 295, 372, 568
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 455, 468
Ama87I CYCGRG 1 cut(s) 310
AoxI GGCC 2 cut(s) 3, 208
ApeKI GCWGC 4 cut(s) 270, 356, 548, 565
Asp700I GAANNNNTTC 1 cut(s) 305
AsuHPI GGTGA 5 cut(s) 23, 180, 241, 316, 572
AvaI CYCGRG 1 cut(s) 310
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 460
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvI GCAGC 4 cut(s) 282, 343, 535, 577
BccI CCATC 5 cut(s) 36, 72, 139, 335, 591
BciT130I CCWGG 1 cut(s) 149
BclI TGATCA 1 cut(s) 477
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 1 cut(s) 588
BglII AGATCT 1 cut(s) 536
BisI GCNGC 4 cut(s) 271, 357, 549, 566
BlsI GCNGC 4 cut(s) 272, 358, 550, 567
Bme1390I CCNGG 1 cut(s) 149
BmeRI GACNNNNNGTC 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 310
BmiI GGNNCC 2 cut(s) 153, 462
BmrFI CCNGG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 134
BsaBI GATNNNNATC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 385
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 149
BseCI ATCGAT 1 cut(s) 134
BseGI GGATG 1 cut(s) 583
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 506
BseRI GAGGAG 3 cut(s) 235, 456, 527
BseXI GCAGC 4 cut(s) 282, 343, 535, 577
BsgI GTGCAG 1 cut(s) 534
BshFI GGCC 2 cut(s) 5, 210
BshVI ATCGAT 1 cut(s) 134
BsiHKCI CYCGRG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 506
BsmAI GTCTC 1 cut(s) 385
BsnI GGCC 2 cut(s) 5, 210
Bso31I GGTCTC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 310
Bsp143I GATC 6 cut(s) 135, 418, 454, 460, 477, 536
BspACI CCGC 2 cut(s) 348, 363
BspANI GGCC 2 cut(s) 5, 210
BspDI ATCGAT 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 153, 462
BspPI GGATC 2 cut(s) 455, 468
BspTNI GGTCTC 1 cut(s) 385
BssMI GATC 6 cut(s) 135, 418, 454, 460, 477, 536
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 521
Bst6I CTCTTC 2 cut(s) 311, 524
BstDEI CTNAG 1 cut(s) 448
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 6 cut(s) 138, 421, 457, 463, 480, 539
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 6 cut(s) 135, 418, 454, 460, 477, 536
BstMWI GCNNNNNNNGC 3 cut(s) 356, 362, 378
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 4 cut(s) 282, 343, 535, 577
BstX2I RGATCY 2 cut(s) 460, 536
BstYI RGATCY 2 cut(s) 460, 536
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 2 cut(s) 5, 210
BsuTUI ATCGAT 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 583
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
ClaI ATCGAT 1 cut(s) 134
Csp6I GTAC 2 cut(s) 13, 488
CviAII CATG 1 cut(s) 115
CviJI RGCY 7 cut(s) 5, 210, 240, 295, 372, 548, 568
CviKI_1 RGCY 7 cut(s) 5, 210, 240, 295, 372, 548, 568
CviQI GTAC 2 cut(s) 13, 488
DdeI CTNAG 1 cut(s) 448
DpnI GATC 6 cut(s) 137, 420, 456, 462, 479, 538
DpnII GATC 6 cut(s) 135, 418, 454, 460, 477, 536
DriI GACNNNNNGTC 1 cut(s) 184
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 311, 524
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 2 cut(s) 311, 524
Eco31I GGTCTC 1 cut(s) 385
Eco88I CYCGRG 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 147
FaeI CATG 1 cut(s) 118
FaiI YATR 6 cut(s) 87, 89, 116, 121, 206, 492
FalI AAGNNNNNCTT 4 cut(s) 148, 180, 290, 322
FatI CATG 1 cut(s) 114
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 4 cut(s) 271, 357, 549, 566
FokI GGATG 1 cut(s) 570
Fsp4HI GCNGC 4 cut(s) 271, 357, 549, 566
FspBI CTAG 1 cut(s) 588
GluI GCNGC 4 cut(s) 271, 357, 549, 566
HaeIII GGCC 2 cut(s) 5, 210
Hin1II CATG 1 cut(s) 118
HinfI GANTC 1 cut(s) 179
HphI GGTGA 5 cut(s) 23, 180, 241, 316, 572
Hpy166II GTNNAC 1 cut(s) 580
Hpy188III TCNNGA 4 cut(s) 126, 298, 458, 481
Hpy8I GTNNAC 1 cut(s) 580
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4V TGCA 3 cut(s) 85, 551, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 356, 362, 378
HpyF3I CTNAG 1 cut(s) 448
Hsp92II CATG 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 6 cut(s) 135, 418, 454, 460, 477, 536
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 9 cut(s) 71, 134, 161, 222, 373, 382, 443, 486, 525
Lsp1109I GCAGC 4 cut(s) 282, 343, 535, 577
MaeI CTAG 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 186
MalI GATC 6 cut(s) 137, 420, 456, 462, 479, 538
MboI GATC 6 cut(s) 135, 418, 454, 460, 477, 536
MboII GAAGA 4 cut(s) 160, 298, 541, 546
MflI RGATCY 2 cut(s) 460, 536
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 9 cut(s) 92, 213, 262, 332, 474, 477, 505, 507, 508
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 305
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 372, 568
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 356, 362, 378
NdeII GATC 6 cut(s) 135, 418, 454, 460, 477, 536
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 2 cut(s) 153, 462
NmuCI GTSAC 1 cut(s) 186
OliI CACNNNNGTG 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 305
PkrI GCNGC 4 cut(s) 272, 358, 550, 567
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 153, 462
PsuI RGATCY 2 cut(s) 460, 536
PvuII CAGCTG 2 cut(s) 372, 568
RsaI GTAC 2 cut(s) 14, 489
RsaNI GTAC 2 cut(s) 13, 488
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 4 cut(s) 271, 357, 549, 566
Sau3AI GATC 6 cut(s) 135, 418, 454, 460, 477, 536
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 149
SetI ASST 9 cut(s) 153, 254, 297, 324, 374, 475, 499, 562, 570
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 2 cut(s) 348, 363
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 521
TaqI TCGA 1 cut(s) 134
TatI WGTACW 2 cut(s) 12, 487
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 4 cut(s) 270, 356, 548, 565
Tsp45I GTSAC 1 cut(s) 186
TspRI CASTG 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.