Rh7BG465600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012979
Physical Location & Seq
Forward (+)
55120629 .. 55122480
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG465600.1

Sequence Viewer

Length: 615 bp
ATGGCCAATGAGTACAATCGCTTCAACCATCACCACCACCACTACCACCACCACCATCACGCTCACGCTCACGCTCATCTGCATATAAATCACAGAGGCACATTCTTGCCCATGTTATGTTCAAGACCATCGATCAAAGATGTCCAGGTTCCAAGTAATGCTTTCTTCTCCAATGGCTCTGTGTCTCCAAAAATCAGTTGTATAGGCCAAGTTAAGAGGAACAACAAAGTTTCTGGCTTCCCGATCACCTCTCAAACTAACAACAGCAGCAACAATATCAAGTATTCCAAGCTCAAGAAACTCTTCTCGGGCAAAAACCTCACCACCGCCACTCCAACTAAAACCGCCACTGCTGCCACCGCCACCAGCTGTCCAAGCAGAAGCAGGAGACCACAAGTGAGTAATGTGAAACAAGATCATTGTGCTATTACAACAACAATCAACTTAGTTGATCTGGATCCTCCTCTACCTGTGATCAAGAGAGTACATAAATCTCCCCAAGAAGGAGAGGAGGACAGTCTTTGGAAGAGAAGATCTCGTGGGGCTGCACTCAAAGGTTTGCAGCTGAAACAAGTTCTCCATCCTAGACATCAAACTCAATCCACAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

204

Amino Acids

22.84

Weight (kDa)

10.43

Isoelectric Point (pI)

62.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 327, 345, 360
AclWI GGATC 2 cut(s) 452, 465
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 14, 486
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 2 cut(s) 25, 123
AjnI CCWGG 1 cut(s) 144
AleI CACNNNNGTG 1 cut(s) 608
AluBI AGCT 3 cut(s) 292, 369, 565
AluI AGCT 3 cut(s) 292, 369, 565
Alw26I GTCTC 2 cut(s) 189, 382
AlwI GGATC 2 cut(s) 452, 465
Ama87I CYCGRG 1 cut(s) 307
AoxI GGCC 2 cut(s) 3, 205
ApeKI GCWGC 4 cut(s) 267, 353, 545, 562
Asp700I GAANNNNTTC 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 23, 238, 313
AvaI CYCGRG 1 cut(s) 307
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 457
BarI GAAGNNNNNNTAC 1 cut(s) 37
BauI CACGAG 1 cut(s) 537
BbvI GCAGC 4 cut(s) 279, 340, 532, 574
BccI CCATC 4 cut(s) 36, 63, 136, 588
BciT130I CCWGG 1 cut(s) 146
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 189, 382
BfaI CTAG 1 cut(s) 585
BglII AGATCT 1 cut(s) 533
BisI GCNGC 4 cut(s) 268, 354, 546, 563
BlsI GCNGC 4 cut(s) 269, 355, 547, 564
Bme1390I CCNGG 1 cut(s) 146
BmeT110I CYCGRG 1 cut(s) 307
BmiI GGNNCC 2 cut(s) 150, 459
BmrFI CCNGG 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpuEI CTTGAG 1 cut(s) 278
Bsa29I ATCGAT 1 cut(s) 131
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 382
BsaXI ACNNNNNCTCC 4 cut(s) 316, 346, 561, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 131
BseGI GGATG 1 cut(s) 580
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 503
BseRI GAGGAG 2 cut(s) 453, 524
BseXI GCAGC 4 cut(s) 279, 340, 532, 574
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 2 cut(s) 5, 207
BshVI ATCGAT 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 307
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 2 cut(s) 189, 382
BsnI GGCC 2 cut(s) 5, 207
Bso31I GGTCTC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 307
Bsp143I GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
BspACI CCGC 3 cut(s) 327, 345, 360
BspANI GGCC 2 cut(s) 5, 207
BspDI ATCGAT 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 150, 459
BspPI GGATC 2 cut(s) 452, 465
BspTNI GGTCTC 1 cut(s) 382
BssMI GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
BssSI CACGAG 1 cut(s) 537
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 2 cut(s) 308, 521
BstDEI CTNAG 1 cut(s) 445
BstF5I GGATG 1 cut(s) 580
BstKTI GATC 7 cut(s) 135, 246, 418, 454, 460, 477, 536
BstMAI GTCTC 2 cut(s) 189, 382
BstMBI GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
BstMWI GCNNNNNNNGC 3 cut(s) 353, 359, 375
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 279, 340, 532, 574
BstX2I RGATCY 2 cut(s) 457, 533
BstYI RGATCY 2 cut(s) 457, 533
Bsu15I ATCGAT 1 cut(s) 131
BsuRI GGCC 2 cut(s) 5, 207
BsuTUI ATCGAT 1 cut(s) 131
BtsCI GGATG 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
ClaI ATCGAT 1 cut(s) 131
Csp6I GTAC 2 cut(s) 13, 485
CviAII CATG 1 cut(s) 112
CviJI RGCY 8 cut(s) 5, 177, 207, 237, 292, 369, 545, 565
CviKI_1 RGCY 8 cut(s) 5, 177, 207, 237, 292, 369, 545, 565
CviQI GTAC 2 cut(s) 13, 485
DdeI CTNAG 1 cut(s) 445
DpnI GATC 7 cut(s) 134, 245, 417, 453, 459, 476, 535
DpnII GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 308, 521
EarI CTCTTC 2 cut(s) 308, 521
Eco31I GGTCTC 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 115
FaiI YATR 6 cut(s) 84, 86, 113, 118, 203, 489
FalI AAGNNNNNCTT 4 cut(s) 145, 177, 287, 319
FatI CATG 1 cut(s) 111
FbaI TGATCA 1 cut(s) 474
Fnu4HI GCNGC 4 cut(s) 268, 354, 546, 563
FokI GGATG 1 cut(s) 567
Fsp4HI GCNGC 4 cut(s) 268, 354, 546, 563
FspBI CTAG 1 cut(s) 585
GluI GCNGC 4 cut(s) 268, 354, 546, 563
HaeIII GGCC 2 cut(s) 5, 207
Hin1II CATG 1 cut(s) 115
HphI GGTGA 3 cut(s) 23, 238, 313
Hpy188III TCNNGA 5 cut(s) 123, 241, 295, 455, 478
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4V TGCA 3 cut(s) 82, 548, 562
HpyF10VI GCNNNNNNNGC 3 cut(s) 353, 359, 375
HpyF3I CTNAG 1 cut(s) 445
Hsp92II CATG 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
LpnPI CCDG 7 cut(s) 131, 158, 219, 370, 379, 440, 483
Lsp1109I GCAGC 4 cut(s) 279, 340, 532, 574
MaeI CTAG 1 cut(s) 585
MalI GATC 7 cut(s) 134, 245, 417, 453, 459, 476, 535
MboI GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
MboII GAAGA 4 cut(s) 157, 295, 538, 543
MflI RGATCY 2 cut(s) 457, 533
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 8 cut(s) 89, 210, 259, 329, 471, 474, 502, 505
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 608
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 369, 565
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 3 cut(s) 353, 359, 375
NdeII GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 150, 459
OliI CACNNNNGTG 1 cut(s) 608
PdmI GAANNNNTTC 1 cut(s) 302
PkrI GCNGC 4 cut(s) 269, 355, 547, 564
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 150, 459
PsuI RGATCY 2 cut(s) 457, 533
PvuII CAGCTG 2 cut(s) 369, 565
RsaI GTAC 2 cut(s) 14, 486
RsaNI GTAC 2 cut(s) 13, 485
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 268, 354, 546, 563
Sau3AI GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
ScrFI CCNGG 1 cut(s) 146
SetI ASST 8 cut(s) 150, 251, 294, 321, 371, 472, 559, 567
SmiMI CAYNNNNRTG 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SsiI CCGC 3 cut(s) 327, 345, 360
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 518
TaqI TCGA 1 cut(s) 131
TatI WGTACW 2 cut(s) 12, 484
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 355
TseI GCWGC 4 cut(s) 267, 353, 545, 562
TspRI CASTG 1 cut(s) 355
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.