Rh7CG512100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012979
Physical Location & Seq
Forward (+)
69133395 .. 69135253
1859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG512100.1

Sequence Viewer

Length: 627 bp
ATGGCCAATGAGTACAATCGCTTCAACCATCACCACCACCACTACCACCACCACCACCACCACCACCATCACGCTCACGCTCACGCTCATCTGCATATAAATCACAGAGGCACATTCTTGCCCATGTTATGTTCAAGACCATCGATCAAAGATGTCCAGGTTCCAAGTAATGCTTTCTTCTCCAATGGCTCTGTGTCTCCAAAAATCAGTTGTATAGGCCAAGTTAAGAGGAACAACAAAGTTTCTGGCTTCCCGATCACCTCTCAAACTAACAACAGCAGCAACAATATCAAGTATTCCAAGCTCAAGAAACTCTTCTCGGGCAAAAACCTCACCGCCGCCACTCCAACTAAAACCGCCACTGCTGCCACGGCCACTAGCTGTCCAAGCAGAAGCAGGAGACCACAAGTGAGTAATGTGAAACAAGATCATTGTGCTATTACAACAACAATCAACTTAGTTGATCTGGATCCTCCTCTACCTGTGATCAAGAGAGTACATAAATCTCCCCAAGAAGGAGAGGAGGACAGTCTTTGGAATAGAAGATCTGGTGGGGCTGCACTCAAAGGTTTGCAGCTGAAACAAGTTCACCATCCTAGACATCAAACTCAATCCACAAGTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.26

Weight (kDa)

10.3

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 336, 339, 357
AclWI GGATC 2 cut(s) 464, 477
AcoI YGGCCR 2 cut(s) 3, 372
AfaI GTAC 2 cut(s) 14, 498
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 2 cut(s) 25, 135
AjnI CCWGG 1 cut(s) 156
AleI CACNNNNGTG 1 cut(s) 620
AluBI AGCT 3 cut(s) 304, 381, 577
AluI AGCT 3 cut(s) 304, 381, 577
Alw26I GTCTC 2 cut(s) 201, 394
AlwI GGATC 2 cut(s) 464, 477
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 3 cut(s) 3, 217, 372
ApeKI GCWGC 4 cut(s) 279, 365, 557, 574
Asp700I GAANNNNTTC 1 cut(s) 314
AsuHPI GGTGA 4 cut(s) 23, 250, 325, 581
AvaI CYCGRG 1 cut(s) 319
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 469
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvI GCAGC 4 cut(s) 291, 352, 544, 586
BccI CCATC 4 cut(s) 36, 75, 148, 600
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 2 cut(s) 201, 394
BfaI CTAG 2 cut(s) 378, 597
BglII AGATCT 1 cut(s) 545
BisI GCNGC 5 cut(s) 280, 339, 366, 558, 575
BlsI GCNGC 5 cut(s) 281, 340, 367, 559, 576
Bme1390I CCNGG 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 162, 471
BmrFI CCNGG 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 592
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 1 cut(s) 515
BseRI GAGGAG 2 cut(s) 465, 536
BseXI GCAGC 4 cut(s) 291, 352, 544, 586
BsgI GTGCAG 1 cut(s) 543
BshFI GGCC 3 cut(s) 5, 219, 374
BshVI ATCGAT 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 201, 394
BsnI GGCC 3 cut(s) 5, 219, 374
Bso31I GGTCTC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
BspACI CCGC 3 cut(s) 336, 339, 357
BspANI GGCC 3 cut(s) 5, 219, 374
BspDI ATCGAT 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 162, 471
BspPI GGATC 2 cut(s) 464, 477
BspTNI GGTCTC 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 457
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 7 cut(s) 147, 258, 430, 466, 472, 489, 548
BstMAI GTCTC 2 cut(s) 201, 394
BstMBI GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
BstMWI GCNNNNNNNGC 3 cut(s) 365, 371, 387
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstV1I GCAGC 4 cut(s) 291, 352, 544, 586
BstX2I RGATCY 2 cut(s) 469, 545
BstYI RGATCY 2 cut(s) 469, 545
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 3 cut(s) 5, 219, 374
BsuTUI ATCGAT 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
ClaI ATCGAT 1 cut(s) 143
Csp6I GTAC 2 cut(s) 13, 497
CviAII CATG 1 cut(s) 124
CviJI RGCY 9 cut(s) 5, 189, 219, 249, 304, 374, 381, 557, 577
CviKI_1 RGCY 9 cut(s) 5, 189, 219, 249, 304, 374, 381, 557, 577
CviQI GTAC 2 cut(s) 13, 497
DdeI CTNAG 1 cut(s) 457
DpnI GATC 7 cut(s) 146, 257, 429, 465, 471, 488, 547
DpnII GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
EaeI YGGCCR 2 cut(s) 3, 372
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Eco31I GGTCTC 1 cut(s) 394
Eco88I CYCGRG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 127
FaiI YATR 6 cut(s) 96, 98, 125, 130, 215, 501
FalI AAGNNNNNCTT 4 cut(s) 157, 189, 299, 331
FatI CATG 1 cut(s) 123
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 5 cut(s) 280, 339, 366, 558, 575
FokI GGATG 1 cut(s) 579
Fsp4HI GCNGC 5 cut(s) 280, 339, 366, 558, 575
FspBI CTAG 2 cut(s) 378, 597
GluI GCNGC 5 cut(s) 280, 339, 366, 558, 575
HaeIII GGCC 3 cut(s) 5, 219, 374
Hin1II CATG 1 cut(s) 127
HphI GGTGA 4 cut(s) 23, 250, 325, 581
Hpy166II GTNNAC 1 cut(s) 589
Hpy188III TCNNGA 5 cut(s) 135, 253, 307, 467, 490
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 1 cut(s) 509
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4V TGCA 3 cut(s) 94, 560, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 365, 371, 387
HpyF3I CTNAG 1 cut(s) 457
Hsp92II CATG 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
LpnPI CCDG 7 cut(s) 143, 170, 231, 382, 452, 495, 534
Lsp1109I GCAGC 4 cut(s) 291, 352, 544, 586
MaeI CTAG 2 cut(s) 378, 597
MalI GATC 7 cut(s) 146, 257, 429, 465, 471, 488, 547
MboI GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
MboII GAAGA 3 cut(s) 169, 307, 555
MflI RGATCY 2 cut(s) 469, 545
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 8 cut(s) 101, 222, 271, 341, 483, 486, 514, 517
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 577
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 365, 371, 387
NdeII GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 162, 471
OliI CACNNNNGTG 1 cut(s) 620
PdmI GAANNNNTTC 1 cut(s) 314
PkrI GCNGC 5 cut(s) 281, 340, 367, 559, 576
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 162, 471
PsuI RGATCY 2 cut(s) 469, 545
PvuII CAGCTG 1 cut(s) 577
RsaI GTAC 2 cut(s) 14, 498
RsaNI GTAC 2 cut(s) 13, 497
RseI CAYNNNNRTG 1 cut(s) 620
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 5 cut(s) 280, 339, 366, 558, 575
Sau3AI GATC 7 cut(s) 144, 255, 427, 463, 469, 486, 545
ScrFI CCNGG 1 cut(s) 158
SetI ASST 8 cut(s) 162, 263, 306, 333, 383, 484, 571, 579
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SsiI CCGC 3 cut(s) 336, 339, 357
SspMI CTAG 2 cut(s) 378, 597
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 530
TaqI TCGA 1 cut(s) 143
TatI WGTACW 2 cut(s) 12, 496
TauI GCSGC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 367
TseI GCWGC 4 cut(s) 279, 365, 557, 574
TspRI CASTG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 314
XspI CTAG 2 cut(s) 378, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.