Rmu_sc0004821.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004821.1
OG0012979
Physical Location & Seq
Forward (+)
65361 .. 65972
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004821.1_g000015.1.cds

Sequence Viewer

Length: 612 bp
atggccaacgagtacaatcgcttcaaccatcaccaccaccactaccaccaccaccaccaccacgctcacgctcatctgcatataactcacagaggcacattcttgcccatgttatgttcaagaccatcgatcaaagatgtccaggttccaagtaatgctttcttcttcaatggctctgtgtctccaaaaatcagttgtataggccaagttaagaggaacaacaaagtttctggcttcccgatcacctctcaaactaacaacagcagcaacaatatcaagtattccaagctcaagaaactcttctcgagcaaaaaccttaccaccgccactccaactaaaaccgccactgctgccaccgccaccagctgtccaagcagaagcaggagaccacaagtgagtactgtgaaacaagatcattgtgctgttacaacaacaatcaacttagttgatctggatcctcctctacctgtgatcaagagagtacataaatctccccaagaaggagaggaggacagtctttggaagagaagatctggtggggctgcactcaaaggtttgcagctgaagcaagttcaccatcctagacatcaaactcaatccacaagtgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

10.33

Isoelectric Point (pI)

64.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012979)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G36940 AT1G36940
fragaria_vesca FvH4_5g38830
prunus_persica Prupe.1G506300_v2.0.a1
pyrus_communis pycom08g14800 pycom08g14810 pycom15g32110
rosa_chinensis RchiOBHm_Chr7g0240831
rosa_multiflora Rmu_sc0002313.1_g000024 Rmu_sc0004821.1_g000015
rosa_roxburghii Rroxscaffold_3G00219590
rosa_rugosa Rorug07G0339400
rosa_samantha Rh7AG493700 Rh7BG465600 Rh7CG512100 Rh7DG478800
rosa_wichuraiana Rw0G010720 Rw7G041770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 324, 342, 357
AclWI GGATC 2 cut(s) 449, 462
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 3 cut(s) 14, 400, 483
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 3 cut(s) 25, 120, 169
AjnI CCWGG 1 cut(s) 141
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 3 cut(s) 289, 366, 562
AluI AGCT 3 cut(s) 289, 366, 562
Alw26I GTCTC 2 cut(s) 186, 379
AlwI GGATC 2 cut(s) 449, 462
Ama87I CYCGRG 1 cut(s) 304
AoxI GGCC 2 cut(s) 3, 202
ApeKI GCWGC 4 cut(s) 264, 350, 542, 559
Asp700I GAANNNNTTC 1 cut(s) 299
AsuHPI GGTGA 3 cut(s) 23, 235, 566
AvaI CYCGRG 1 cut(s) 304
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 454
BarI GAAGNNNNNNTAC 1 cut(s) 37
BbvI GCAGC 4 cut(s) 276, 337, 529, 571
BccI CCATC 3 cut(s) 36, 133, 585
BciT130I CCWGG 1 cut(s) 143
BclI TGATCA 1 cut(s) 471
BcoDI GTCTC 2 cut(s) 186, 379
BfaI CTAG 1 cut(s) 582
BglII AGATCT 1 cut(s) 530
BisI GCNGC 4 cut(s) 265, 351, 543, 560
BlsI GCNGC 4 cut(s) 266, 352, 544, 561
BmcAI AGTACT 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 2 cut(s) 147, 456
BmrFI CCNGG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 128
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 313, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 128
BseGI GGATG 1 cut(s) 577
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 500
BseRI GAGGAG 2 cut(s) 450, 521
BseXI GCAGC 4 cut(s) 276, 337, 529, 571
BsgI GTGCAG 1 cut(s) 528
BshFI GGCC 2 cut(s) 5, 204
BshVI ATCGAT 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 2 cut(s) 186, 379
BsnI GGCC 2 cut(s) 5, 204
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 304
Bsp143I GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
BspACI CCGC 3 cut(s) 324, 342, 357
BspANI GGCC 2 cut(s) 5, 204
BspDI ATCGAT 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 147, 456
BspPI GGATC 2 cut(s) 449, 462
BspTNI GGTCTC 1 cut(s) 379
BssMI GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 2 cut(s) 403, 515
Bst6I CTCTTC 2 cut(s) 305, 518
BstDEI CTNAG 1 cut(s) 442
BstF5I GGATG 1 cut(s) 577
BstKTI GATC 7 cut(s) 132, 243, 415, 451, 457, 474, 533
BstMAI GTCTC 2 cut(s) 186, 379
BstMBI GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
BstMWI GCNNNNNNNGC 4 cut(s) 350, 356, 372, 565
BstNI CCWGG 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 141
BstV1I GCAGC 4 cut(s) 276, 337, 529, 571
BstX2I RGATCY 2 cut(s) 454, 530
BstYI RGATCY 2 cut(s) 454, 530
Bsu15I ATCGAT 1 cut(s) 128
BsuRI GGCC 2 cut(s) 5, 204
BsuTUI ATCGAT 1 cut(s) 128
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
ClaI ATCGAT 1 cut(s) 128
Csp6I GTAC 3 cut(s) 13, 399, 482
CviAII CATG 1 cut(s) 109
CviJI RGCY 8 cut(s) 5, 174, 204, 234, 289, 366, 542, 562
CviKI_1 RGCY 8 cut(s) 5, 174, 204, 234, 289, 366, 542, 562
CviQI GTAC 3 cut(s) 13, 399, 482
DdeI CTNAG 1 cut(s) 442
DpnI GATC 7 cut(s) 131, 242, 414, 450, 456, 473, 532
DpnII GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 305, 518
EarI CTCTTC 2 cut(s) 305, 518
Eco31I GGTCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 584
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 81, 83, 110, 115, 200, 486
FalI AAGNNNNNCTT 4 cut(s) 142, 174, 284, 316
FatI CATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 265, 351, 543, 560
FokI GGATG 1 cut(s) 564
Fsp4HI GCNGC 4 cut(s) 265, 351, 543, 560
FspBI CTAG 1 cut(s) 582
GluI GCNGC 4 cut(s) 265, 351, 543, 560
HaeIII GGCC 2 cut(s) 5, 204
Hin1II CATG 1 cut(s) 112
HphI GGTGA 3 cut(s) 23, 235, 566
Hpy166II GTNNAC 1 cut(s) 574
Hpy188III TCNNGA 6 cut(s) 120, 238, 292, 304, 452, 475
Hpy8I GTNNAC 1 cut(s) 574
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 2 cut(s) 403, 515
HpyCH4V TGCA 3 cut(s) 79, 545, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 356, 372, 565
HpyF3I CTNAG 1 cut(s) 442
Hsp92II CATG 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 471
Kzo9I GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
LpnPI CCDG 8 cut(s) 128, 155, 216, 367, 376, 437, 480, 519
Lsp1109I GCAGC 4 cut(s) 276, 337, 529, 571
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 424
MalI GATC 7 cut(s) 131, 242, 414, 450, 456, 473, 532
MboI GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
MboII GAAGA 5 cut(s) 154, 157, 292, 535, 540
MflI RGATCY 2 cut(s) 454, 530
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 7 cut(s) 86, 207, 256, 468, 471, 499, 502
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 299
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 605
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 366, 562
MspR9I CCNGG 1 cut(s) 143
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 4 cut(s) 350, 356, 372, 565
NdeII GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 147, 456
OliI CACNNNNGTG 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 299
PkrI GCNGC 4 cut(s) 266, 352, 544, 561
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 2 cut(s) 147, 456
PsuI RGATCY 2 cut(s) 454, 530
PvuII CAGCTG 2 cut(s) 366, 562
RsaI GTAC 3 cut(s) 14, 400, 483
RsaNI GTAC 3 cut(s) 13, 399, 482
RseI CAYNNNNRTG 1 cut(s) 605
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 4 cut(s) 265, 351, 543, 560
Sau3AI GATC 7 cut(s) 129, 240, 412, 448, 454, 471, 530
ScaI AGTACT 1 cut(s) 400
ScrFI CCNGG 1 cut(s) 143
SetI ASST 8 cut(s) 147, 248, 291, 318, 368, 469, 556, 564
Sfr274I CTCGAG 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 304
SmiMI CAYNNNNRTG 1 cut(s) 605
SmlI CTYRAG 2 cut(s) 290, 304
SmoI CTYRAG 2 cut(s) 290, 304
SsiI CCGC 3 cut(s) 324, 342, 357
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 403, 515
TaqI TCGA 2 cut(s) 128, 305
TatI WGTACW 3 cut(s) 12, 398, 481
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 352
TseI GCWGC 4 cut(s) 264, 350, 542, 559
TspRI CASTG 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.