Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Reverse (-)

16275108 .. 16278742

Gene Structure 3635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G43190.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCGGAATCTTCCAAAGTCGTTCATGTTCGTAATGTTGGTCATGAGATTTCTGAAAATGATTTGCTTCAGCTTTTTCAACCATTTGGTGTTATAACTAAGCTTGTGATGCTCAGGGCAAAGAATCAGGCTCTTCTCCAAATGCAAGATGTTTCTTCTGCAGTTAGTGCTCTTCAGTTTTTTACTAATGTTCAGCCAACTATAAGAGGTAGGAATGTGTATGTCCAATTCTCTTCTCACCAAGAATTGACAACGATAGAGCAGAATATTCATGGAAGGGAAGATGAGCCGAACCGTATTCTCTTAGTCACAATCCATCACATGCTGTATCCAATTACTGTTGACGTCCTGCATCAAGTTTTTTCTCCCTATGGATTTGTCGAGAAGCTCGTCACTTTCCAGAAGTCTGCTGGTTTTCAAGCTCTTATACAGTATCAGGTACAACAGTGTGCTGCCTCTGCTAGAACTGCTCTACAGGGTCGTAACATATATGACGGGTGTTGTCAGTTGGATATCCAGTTCTCAAACCTTGAGGAGCTGCAAGTAAATTACAACAATGATCGATCTAGGGATTATACAAATCCAAACCTGCCTGCAGAACAAAAAGGCCGTTCATCGCATCCTTGCTATGGTGATACAGGAGTGGCATATCCTCAGATGGCAAACACATCAGCGATTGCAGCTGCCTTTGGAGGAGGCTTGCCTCCGGGTATAACCGGCACAAATGATAGGTGTACAGTCCTTGTCTCTAACCTGAATGCAGATAGTATTGATGAAGATAAGCTATTCAATCTATTTTCTCTTTACGGGAACATTGTAAGGATTAAGCTTCTTCGGAACAAACCTGACCATGCCCTTGTCCAAATGGGCGATGGTTTCCAAGCTGAACTTGCAGTACATTTCCTCAAGGGAGCAATGCTGTTTGGTAAGCGGTTAGAAGTAAACTTCTCAAAGCATCCAAATATAACACCAGGCACAGACTCTCATGATTATGTAAACTCTAACCTGAACCGCTTCAACCGCAATGCTGCAAAGAATTACCGCTATTGCTGCTCCCCTACAAAGATGATTCACTTATCGACTCTTCCTCAAGACGTGACAGAGGAGGAAGTGATGAACCATGTCCAAGAACACGGTGCAGTAGTGAACACAAAAGTGTTTGAGATGAACGGGAAAAAGCAAGCTCTGGTACAGTTTGAGAACGAGGAGGAAGCTGCGGAAGCATTGGTATGCAAGCACGCGACTTCTCTAGGCGGATCAATTATCAGAATCTCCTTCTCCCAGCTACAGACGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

432

Amino Acids

48.23

Weight (kDa)

6.35

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	9 - 59	9.1e-06	RNA recognition motif
RRM_8	PF11835	96 - 173	2.3e-21	RRM-like domain
RRM_5	PF13893	225 - 324	6.1e-32	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	245 - 310	1e-05	RNA recognition motif
RRM_1	PF00076	358 - 420	4.8e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AatII	GACGTC	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	597
AccII	CGCG	1 cut(s)	1241
AciI	CCGC	7 cut(s)	5, 931, 1012, 1021, 1042, 1217, 1254
AclWI	GGATC	1 cut(s)	1264
AcuI	CTGAAG	2 cut(s)	53, 158
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	4 cut(s)	441, 736, 897, 1191
AfiI	CCNNNNNNNGG	1 cut(s)	629
AgsI	TTSAA	4 cut(s)	80, 419, 790, 1018
AjiI	CACGTC	1 cut(s)	1096
AjnI	CCWGG	1 cut(s)	970
AleI	CACNNNNGTG	1 cut(s)	1154
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
Alw21I	GWGCWC	1 cut(s)	172
Alw26I	GTCTC	1 cut(s)	751
AlwI	GGATC	1 cut(s)	1264
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	7 cut(s)	452, 538, 680, 683, 1028, 1050, 1214
Asp700I	GAANNNNTTC	1 cut(s)	1013
AsuC2I	CCSGG	1 cut(s)	708
AsuHPI	GGTGA	2 cut(s)	230, 644
BaeI	ACNNNNGTAYC	4 cut(s)	431, 464, 627, 660
Bbv12I	GWGCWC	1 cut(s)	172
BbvI	GCAGC	7 cut(s)	439, 525, 670, 692, 1015, 1037, 1201
BccI	CCATC	3 cut(s)	324, 652, 866
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	1 cut(s)	972
BciVI	GTATCC	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	708
BcoDI	GTCTC	1 cut(s)	751
BfaI	CTAG	3 cut(s)	462, 567, 1250
BfmI	CTRYAG	4 cut(s)	159, 473, 594, 1286
BfuAI	ACCTGC	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	339
BisI	GCNGC	7 cut(s)	453, 539, 681, 684, 1029, 1051, 1215
BlsI	GCNGC	7 cut(s)	454, 540, 682, 685, 1030, 1052, 1216
Bme1390I	CCNGG	2 cut(s)	708, 972
BmgBI	CACGTC	1 cut(s)	1096
BmrFI	CCNGG	2 cut(s)	708, 972
BmsI	GCATC	4 cut(s)	99, 361, 628, 964
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	3 cut(s)	551, 890, 1074
BpuMI	CCSGG	1 cut(s)	708
Bsa29I	ATCGAT	1 cut(s)	562
BsaHI	GRCGYC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	629
Bse118I	RCCGGY	1 cut(s)	716
Bse1I	ACTGG	1 cut(s)	517
Bse3DI	GCAATG	2 cut(s)	921, 1030
BseBI	CCWGG	1 cut(s)	972
BseCI	ATCGAT	1 cut(s)	562
BseGI	GGATG	2 cut(s)	619, 955
BseLI	CCNNNNNNNGG	1 cut(s)	629
BseMI	GCAATG	2 cut(s)	921, 1030
BseMII	CTCAG	2 cut(s)	127, 668
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	4 cut(s)	548, 708, 1118, 1220
BseXI	GCAGC	7 cut(s)	439, 525, 670, 692, 1015, 1037, 1201
BseYI	CCCAGC	1 cut(s)	1281
BsgI	GTGCAG	1 cut(s)	1158
Bsh1236I	CGCG	1 cut(s)	1241
BshFI	GGCC	1 cut(s)	609
BshVI	ATCGAT	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	172
BsiSI	CCGG	2 cut(s)	707, 717
BslI	CCNNNNNNNGG	1 cut(s)	629
BsmAI	GTCTC	1 cut(s)	751
BsmI	GAATGC	1 cut(s)	763
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	734
Bsp143I	GATC	3 cut(s)	559, 563, 1256
BspACI	CCGC	7 cut(s)	5, 931, 1012, 1021, 1042, 1217, 1254
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	2 cut(s)	126, 667
BspDI	ATCGAT	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	1241
BspHI	TCATGA	2 cut(s)	43, 985
BspMAI	CTGCAG	2 cut(s)	163, 598
BspMI	ACCTGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	1264
BspQI	GCTCTTC	2 cut(s)	138, 177
BsrDI	GCAATG	2 cut(s)	921, 1030
BsrFI	RCCGGY	1 cut(s)	716
BsrGI	TGTACA	1 cut(s)	734
BsrI	ACTGG	1 cut(s)	517
BssAI	RCCGGY	1 cut(s)	716
BssMI	GATC	3 cut(s)	559, 563, 1256
BssNI	GRCGYC	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	972
Bst4CI	ACNGT	7 cut(s)	296, 340, 432, 447, 739, 1136, 1194
Bst6I	CTCTTC	4 cut(s)	138, 177, 238, 1089
BstACI	GRCGYC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	734
BstC8I	GCNNGC	5 cut(s)	594, 701, 1182, 1235, 1239
BstDEI	CTNAG	4 cut(s)	99, 113, 304, 654
BstF5I	GGATG	2 cut(s)	619, 955
BstFNI	CGCG	1 cut(s)	1241
BstKTI	GATC	3 cut(s)	562, 566, 1259
BstMAI	GTCTC	1 cut(s)	751
BstMBI	GATC	3 cut(s)	559, 563, 1256
BstMWI	GCNNNNNNNGC	9 cut(s)	109, 167, 458, 467, 680, 890, 1020, 1050, 1220
BstNI	CCWGG	1 cut(s)	972
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	706, 970
BstSFI	CTRYAG	4 cut(s)	159, 473, 594, 1286
BstUI	CGCG	1 cut(s)	1241
BstV1I	GCAGC	7 cut(s)	439, 525, 670, 692, 1015, 1037, 1201
Bsu15I	ATCGAT	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	609
BsuTUI	ATCGAT	1 cut(s)	562
BtgZI	GCGATG	2 cut(s)	600, 885
BtrI	CACGTC	1 cut(s)	1096
BtsCI	GGATG	2 cut(s)	619, 955
BtsIMutI	CAGTG	1 cut(s)	452
BveI	ACCTGC	1 cut(s)	597
Cac8I	GCNNGC	5 cut(s)	594, 701, 1182, 1235, 1239
CciI	TCATGA	2 cut(s)	43, 985
Cfr10I	RCCGGY	1 cut(s)	716
ClaI	ATCGAT	1 cut(s)	562
Csp6I	GTAC	4 cut(s)	440, 735, 896, 1190
CviAII	CATG	7 cut(s)	26, 44, 272, 322, 851, 986, 1121
CviQI	GTAC	4 cut(s)	440, 735, 896, 1190
DdeI	CTNAG	4 cut(s)	99, 113, 304, 654
DpnI	GATC	3 cut(s)	561, 565, 1258
DpnII	GATC	3 cut(s)	559, 563, 1256
Eam1104I	CTCTTC	4 cut(s)	138, 177, 238, 1089
EarI	CTCTTC	4 cut(s)	138, 177, 238, 1089
EciI	GGCGGA	2 cut(s)	20, 1269
Eco32I	GATATC	1 cut(s)	514
Eco57I	CTGAAG	2 cut(s)	53, 158
EcoRII	CCWGG	1 cut(s)	970
EcoRV	GATATC	1 cut(s)	514
FaeI	CATG	7 cut(s)	29, 47, 275, 325, 854, 989, 1124
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FatI	CATG	7 cut(s)	25, 43, 271, 321, 850, 985, 1120
Fnu4HI	GCNGC	7 cut(s)	453, 539, 681, 684, 1029, 1051, 1215
FokI	GGATG	2 cut(s)	606, 942
Fsp4HI	GCNGC	7 cut(s)	453, 539, 681, 684, 1029, 1051, 1215
FspBI	CTAG	3 cut(s)	462, 567, 1250
GluI	GCNGC	7 cut(s)	453, 539, 681, 684, 1029, 1051, 1215
GsaI	CCCAGC	1 cut(s)	1285
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	2 cut(s)	707, 717
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	7 cut(s)	29, 47, 275, 325, 854, 989, 1124
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	101, 827
HinfI	GANTC	6 cut(s)	8, 124, 980, 1069, 1081, 1269
HpaII	CCGG	2 cut(s)	707, 717
HphI	GGTGA	2 cut(s)	230, 644
Hpy166II	GTNNAC	5 cut(s)	343, 735, 943, 997, 1147
Hpy188I	TCNGA	4 cut(s)	55, 657, 837, 1268
Hpy188III	TCNNGA	5 cut(s)	44, 382, 400, 986, 1091
Hpy8I	GTNNAC	5 cut(s)	343, 735, 943, 997, 1147
HpyAV	CCTTC	2 cut(s)	270, 1285
HpyCH4III	ACNGT	7 cut(s)	296, 340, 432, 447, 739, 1136, 1194
HpyCH4IV	ACGT	2 cut(s)	345, 1095
HpyF10VI	GCNNNNNNNGC	9 cut(s)	109, 167, 458, 467, 680, 890, 1020, 1050, 1220
HpyF3I	CTNAG	4 cut(s)	99, 113, 304, 654
HpySE526I	ACGT	2 cut(s)	345, 1095
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	7 cut(s)	29, 47, 275, 325, 854, 989, 1124
Kzo9I	GATC	3 cut(s)	559, 563, 1256
LguI	GCTCTTC	2 cut(s)	138, 177
LmnI	GCTCC	3 cut(s)	535, 911, 1058
Lsp1109I	GCAGC	7 cut(s)	439, 525, 670, 692, 1015, 1037, 1201
LweI	GCATC	4 cut(s)	99, 361, 628, 964
MaeI	CTAG	3 cut(s)	462, 567, 1250
MaeII	ACGT	2 cut(s)	345, 1095
MaeIII	GTNAC	4 cut(s)	307, 391, 482, 1096
MalI	GATC	3 cut(s)	561, 565, 1258
MboI	GATC	3 cut(s)	559, 563, 1256
MboII	GAAGA	9 cut(s)	3, 125, 147, 164, 225, 293, 788, 824, 1076
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	6 cut(s)	227, 245, 333, 547, 1036, 1260
MlyI	GAGTC	2 cut(s)	974, 1075
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	1013
MseI	TTAA	2 cut(s)	825, 1297
MslI	CAYNNNNRTG	3 cut(s)	990, 1154, 1228
MspA1I	CMGCKG	1 cut(s)	683
MspI	CCGG	2 cut(s)	707, 717
MspR9I	CCNGG	2 cut(s)	708, 972
Mva1269I	GAATGC	1 cut(s)	763
MvaI	CCWGG	1 cut(s)	972
MvnI	CGCG	1 cut(s)	1241
MwoI	GCNNNNNNNGC	9 cut(s)	109, 167, 458, 467, 680, 890, 1020, 1050, 1220
NciI	CCSGG	1 cut(s)	708
NdeII	GATC	3 cut(s)	559, 563, 1256
NlaIII	CATG	7 cut(s)	29, 47, 275, 325, 854, 989, 1124
NmuCI	GTSAC	3 cut(s)	307, 391, 1096
NspI	RCATGY	1 cut(s)	325
OliI	CACNNNNGTG	1 cut(s)	1154
PagI	TCATGA	2 cut(s)	43, 985
PciSI	GCTCTTC	2 cut(s)	138, 177
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PctI	GAATGC	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	1013
PfeI	GAWTC	4 cut(s)	8, 124, 1069, 1269
PkrI	GCNGC	7 cut(s)	454, 540, 682, 685, 1030, 1052, 1216
PleI	GAGTC	2 cut(s)	974, 1075
PpsI	GAGTC	2 cut(s)	974, 1075
PsiI	TTATAA	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	970
PspFI	CCCAGC	1 cut(s)	1281
PspGI	CCWGG	1 cut(s)	970
PsrI	GAACNNNNNNTAC	2 cut(s)	879, 911
PstI	CTGCAG	2 cut(s)	163, 598
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	4 cut(s)	441, 736, 897, 1191
RsaNI	GTAC	4 cut(s)	440, 735, 896, 1190
RseI	CAYNNNNRTG	3 cut(s)	990, 1154, 1228
SapI	GCTCTTC	2 cut(s)	138, 177
SaqAI	TTAA	2 cut(s)	825, 1297
SatI	GCNGC	7 cut(s)	453, 539, 681, 684, 1029, 1051, 1215
Sau3AI	GATC	3 cut(s)	559, 563, 1256
SchI	GAGTC	2 cut(s)	974, 1075
ScrFI	CCNGG	2 cut(s)	708, 972
SduI	GDGCHC	1 cut(s)	172
SfaNI	GCATC	4 cut(s)	99, 361, 628, 964
SfcI	CTRYAG	4 cut(s)	159, 473, 594, 1286
SmiMI	CAYNNNNRTG	3 cut(s)	990, 1154, 1228
SmlI	CTYRAG	3 cut(s)	530, 905, 1089
SmoI	CTYRAG	3 cut(s)	530, 905, 1089
Sse9I	AATT	6 cut(s)	227, 245, 333, 547, 1036, 1260
SsiI	CCGC	7 cut(s)	5, 931, 1012, 1021, 1042, 1217, 1254
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	3 cut(s)	462, 567, 1250
StyD4I	CCNGG	2 cut(s)	706, 970
TaaI	ACNGT	7 cut(s)	296, 340, 432, 447, 739, 1136, 1194
TaiI	ACGT	2 cut(s)	348, 1098
TaqI	TCGA	3 cut(s)	381, 562, 1079
TasI	AATT	6 cut(s)	227, 245, 333, 547, 1036, 1260
TatI	WGTACW	2 cut(s)	734, 895
TfiI	GAWTC	4 cut(s)	8, 124, 1069, 1269
Tru1I	TTAA	2 cut(s)	825, 1297
Tru9I	TTAA	2 cut(s)	825, 1297
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	3 cut(s)	307, 391, 1096
TseI	GCWGC	7 cut(s)	452, 538, 680, 683, 1028, 1050, 1214
Tsp45I	GTSAC	3 cut(s)	307, 391, 1096
TspDTI	ATGAA	6 cut(s)	14, 260, 603, 789, 1130, 1181
TspRI	CASTG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	325
XcmI	CCANNNNNNNNNTGG	2 cut(s)	407, 869
XmnI	GAANNNNTTC	1 cut(s)	1013
XspI	CTAG	3 cut(s)	462, 567, 1250
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.