Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Forward (+)

5209090 .. 5216305

Gene Structure 7216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1044700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGTTGGTTGGGTTGTTGCAGGGTTTTCCACGATGACAGAACCTTCTAAAGTCATTCATGTTCGAAACGTGGGGCATGAAATTTCTGAAAATGATTTGCTTCAGCTATTTCAGCCATTTGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTTATCCAAATGCAAGATACTGCTGCTGCAGTCAGTGCACTGCAGTTCTATGCAAATGTTCAGCCTGCCATAAGGGGAAGGAATGTATATGTCCAATTCTCCTCACATCAAGAACTGACAACAATGTACCAGAATGCTCAAGGACGAGGAGATGAGCCAAACCGAATTCTGTTAGTTACAGTTCATCACATGCTATATCCTATTACAGTGGAAGTCCTGCATCAAGTGTTTTTTCCTCATGGTTTTGTTGAGAAGATCGTCACTTTTCAGAAGTCAGCTGGTTTTCAGGCCCTAATTCAGTATCAATCCCGCCAGAGTGCTGTTGCAGCTAGAACAGCCCTGCAGGGACGTAATATTTATGATGGTTGTTGTCAACTAGACATTCAGTTCTCAAACCTTGACGAATTACAAGTGAACTACAATAATGAGCGTTCAAGGGATTTCACAAATCCCAATTTGCCTTCAGAACAAAAAGGAAGATCTCCACAATCTGGATATGGTGATGCAGGAGGCATGTATGGCCTTCAAGGTACTGGAGCCAGGGCAGTTGGATTTCCGCAGATGCCAAATGCGGCTGCAATTGCAGCAGCCTTCGGTGGAGGTTTGCCTCCTGGTATAAGTGGAACCAACGACAGGTGTACAGTCCTTGTCTCCAATCTGAATCCTGATAAAATAGATGAGGACAAGCTTTTTAACCTGTTTTCCATCTATGGAAACATTGTGAGAATTAAACTTCTTCGGAACAAGCCAGACCATGCCCTTGTCCAGATGGGTGATGGCTTCCAGGCTGAACTGGCAGTACACTTTCTAAAGGGTGCACTACTGTTTGGGAAGCGATTGGAGGTCAACTTCTCAAAGCATCCAAATATAACGCAAGGTGCTGACACACATGAATATGTGAACTCAAATCTCAACCGCTTCAACCGTAATGCAGCAAAGAACTACCGCTATTGCTGCTCCCCAACAAAGATGATCCACTTGTCTTCTCTTCCCCAGGAAGTCACTGAAGAGGAGATTGTGAGCCACCTAGAGGAAATTGGGACCATTGTCAGCACGAAGCTCTTTGAGATGAATGGAAAGAAGCAGGCCTTGGTTATGTTTGAAACTGAGGAGCAGGCCACTGAAGCACTTGTGTGCAAGCATGCTACTTCCATCGGTGGGTCAATAATTCGAATCTCCTTCTCGCAGCTACAGGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

456

Amino Acids

50.38

Weight (kDa)

7.23

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_8	PF11835	107 - 186	2.3e-21	RRM-like domain
RRM_5	PF13893	244 - 353	8.9e-33	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	270 - 335	3.2e-06	RNA recognition motif
RRM_1	PF00076	383 - 445	8.4e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	656
AciI	CCGC	5 cut(s)	475, 722, 737, 1081, 1111
AclWI	GGATC	1 cut(s)	1132
AcsI	RAATTY	2 cut(s)	81, 330
AcuI	CTGAAG	4 cut(s)	86, 612, 1191, 1308
AfaI	GTAC	4 cut(s)	293, 697, 805, 966
AfiI	CCNNNNNNNGG	4 cut(s)	656, 798, 1195, 1323
AgsI	TTSAA	4 cut(s)	600, 692, 1087, 1268
AjnI	CCWGG	4 cut(s)	704, 775, 948, 1158
AjuI	GAANNNNNNNTTGG	2 cut(s)	1238, 1270
AleI	CACNNNNGTG	1 cut(s)	1297
AluBI	AGCT	7 cut(s)	106, 136, 443, 494, 853, 1225, 1354
AluI	AGCT	7 cut(s)	106, 136, 443, 494, 853, 1225, 1354
Alw21I	GWGCWC	2 cut(s)	205, 985
Alw26I	GTCTC	1 cut(s)	820
Alw44I	GTGCAC	2 cut(s)	201, 981
AlwI	GGATC	1 cut(s)	1132
AoxI	GGCC	4 cut(s)	453, 685, 1251, 1281
ApaLI	GTGCAC	2 cut(s)	201, 981
ApeKI	GCWGC	9 cut(s)	188, 191, 491, 740, 749, 752, 1097, 1119, 1351
ApoI	RAATTY	2 cut(s)	81, 330
AspS9I	GGNCC	2 cut(s)	454, 1206
AsuHPI	GGTGA	2 cut(s)	677, 950
AsuII	TTCGAA	2 cut(s)	64, 1336
AvaII	GGWCC	1 cut(s)	1206
BaeGI	GKGCMC	2 cut(s)	205, 985
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	2 cut(s)	205, 985
BbvI	GCAGC	9 cut(s)	175, 178, 503, 727, 761, 764, 1106, 1109, 1363
BccI	CCATC	5 cut(s)	521, 878, 928, 935, 1325
BciT130I	CCWGG	4 cut(s)	706, 777, 950, 1160
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	3 cut(s)	495, 542, 1193
BfmI	CTRYAG	4 cut(s)	192, 206, 506, 1355
BglII	AGATCT	1 cut(s)	644
Bme1390I	CCNGG	4 cut(s)	706, 777, 950, 1160
Bme18I	GGWCC	1 cut(s)	1206
BmgT120I	GGNCC	2 cut(s)	454, 1206
BmiI	GGNNCC	3 cut(s)	703, 790, 1207
BmrFI	CCNGG	4 cut(s)	706, 777, 950, 1160
BmsI	GCATC	5 cut(s)	132, 394, 658, 717, 1033
BoxI	GACNNNNGTC	1 cut(s)	1211
BpiI	GAAGAC	1 cut(s)	1140
BpmI	CTGGAG	1 cut(s)	720
Bpu14I	TTCGAA	2 cut(s)	64, 1336
BpuEI	CTTGAG	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	705, 1158, 1254
Bsc4I	CCNNNNNNNGG	4 cut(s)	656, 798, 1195, 1323
Bse1I	ACTGG	2 cut(s)	703, 963
BseBI	CCWGG	4 cut(s)	706, 777, 950, 1160
BseDI	CCNNGG	3 cut(s)	705, 1158, 1254
BseGI	GGATG	1 cut(s)	1024
BseLI	CCNNNNNNNGG	4 cut(s)	656, 798, 1195, 1323
BseMII	CTCAG	1 cut(s)	1263
BseNI	ACTGG	2 cut(s)	703, 963
BseRI	GAGGAG	4 cut(s)	256, 327, 1190, 1289
BseSI	GKGCMC	2 cut(s)	205, 985
BseXI	GCAGC	9 cut(s)	175, 178, 503, 727, 761, 764, 1106, 1109, 1363
BshFI	GGCC	4 cut(s)	455, 687, 1253, 1283
BsiHKAI	GWGCWC	2 cut(s)	205, 985
BslFI	GGGAC	2 cut(s)	525, 1219
BslI	CCNNNNNNNGG	4 cut(s)	656, 798, 1195, 1323
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	2 cut(s)	525, 1219
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	455, 687, 1253, 1283
Bsp119I	TTCGAA	2 cut(s)	64, 1336
Bsp1286I	GDGCHC	2 cut(s)	205, 985
Bsp1407I	TGTACA	1 cut(s)	803
Bsp143I	GATC	3 cut(s)	420, 644, 1137
BspACI	CCGC	5 cut(s)	475, 722, 737, 1081, 1111
BspANI	GGCC	4 cut(s)	455, 687, 1253, 1283
BspCNI	CTCAG	1 cut(s)	1264
BspLI	GGNNCC	3 cut(s)	703, 790, 1207
BspMAI	CTGCAG	3 cut(s)	196, 210, 510
BspPI	GGATC	1 cut(s)	1132
BspT104I	TTCGAA	2 cut(s)	64, 1336
BsrGI	TGTACA	1 cut(s)	803
BsrI	ACTGG	2 cut(s)	703, 963
BssECI	CCNNGG	3 cut(s)	705, 1158, 1254
BssMI	GATC	3 cut(s)	420, 644, 1137
BssT1I	CCWWGG	1 cut(s)	1254
Bst2UI	CCWGG	4 cut(s)	706, 777, 950, 1160
Bst4CI	ACNGT	5 cut(s)	346, 373, 808, 990, 1091
Bst6I	CTCTTC	2 cut(s)	1158, 1167
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	803
BstBI	TTCGAA	2 cut(s)	64, 1336
BstC8I	GCNNGC	5 cut(s)	231, 1251, 1281, 1304, 1308
BstDEI	CTNAG	2 cut(s)	132, 1272
BstF5I	GGATG	1 cut(s)	1024
BstKTI	GATC	3 cut(s)	423, 647, 1140
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	3 cut(s)	420, 644, 1137
BstNI	CCWGG	4 cut(s)	706, 777, 950, 1160
BstNSI	RCATGY	3 cut(s)	358, 682, 1310
BstPAI	GACNNNNGTC	1 cut(s)	1211
BstSCI	CCNGG	4 cut(s)	704, 775, 948, 1158
BstSFI	CTRYAG	4 cut(s)	192, 206, 506, 1355
BstSLI	GKGCMC	2 cut(s)	205, 985
BstV1I	GCAGC	9 cut(s)	175, 178, 503, 727, 761, 764, 1106, 1109, 1363
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	4 cut(s)	455, 687, 1253, 1283
BtsCI	GGATG	1 cut(s)	1024
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	5 cut(s)	203, 205, 378, 1167, 1284
Cac8I	GCNNGC	5 cut(s)	231, 1251, 1281, 1304, 1308
Cfr13I	GGNCC	2 cut(s)	454, 1206
Csp6I	GTAC	4 cut(s)	292, 696, 804, 965
CviAII	CATG	8 cut(s)	59, 77, 355, 404, 679, 920, 1055, 1307
CviQI	GTAC	4 cut(s)	292, 696, 804, 965
DdeI	CTNAG	2 cut(s)	132, 1272
DpnI	GATC	3 cut(s)	422, 646, 1139
DpnII	GATC	3 cut(s)	420, 644, 1137
Eam1104I	CTCTTC	2 cut(s)	1158, 1167
EarI	CTCTTC	2 cut(s)	1158, 1167
Eco130I	CCWWGG	1 cut(s)	1254
Eco147I	AGGCCT	1 cut(s)	1253
Eco47I	GGWCC	1 cut(s)	1206
Eco57I	CTGAAG	4 cut(s)	86, 612, 1191, 1308
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	4 cut(s)	704, 775, 948, 1158
EcoT14I	CCWWGG	1 cut(s)	1254
ErhI	CCWWGG	1 cut(s)	1254
FaeI	CATG	8 cut(s)	62, 80, 358, 407, 682, 923, 1058, 1310
FalI	AAGNNNNNCTT	2 cut(s)	1238, 1270
FaqI	GGGAC	2 cut(s)	525, 1219
FatI	CATG	8 cut(s)	58, 76, 354, 403, 678, 919, 1054, 1306
FauI	CCCGC	1 cut(s)	482
FokI	GGATG	1 cut(s)	1011
FspBI	CTAG	3 cut(s)	495, 542, 1193
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	4 cut(s)	455, 687, 1253, 1283
Hin1II	CATG	8 cut(s)	62, 80, 358, 407, 682, 923, 1058, 1310
HincII	GTYRAC	2 cut(s)	539, 1012
HindII	GTYRAC	2 cut(s)	539, 1012
HindIII	AAGCTT	2 cut(s)	134, 851
HinfI	GANTC	3 cut(s)	123, 826, 1338
HphI	GGTGA	2 cut(s)	677, 950
Hpy166II	GTNNAC	8 cut(s)	203, 539, 580, 804, 967, 983, 1012, 1066
Hpy188I	TCNGA	5 cut(s)	88, 435, 631, 825, 906
Hpy188III	TCNNGA	4 cut(s)	275, 657, 830, 931
Hpy8I	GTNNAC	8 cut(s)	203, 539, 580, 804, 967, 983, 1012, 1066
HpyAV	CCTTC	6 cut(s)	54, 237, 636, 698, 766, 1354
HpyCH4III	ACNGT	5 cut(s)	346, 373, 808, 990, 1091
HpyCH4IV	ACGT	2 cut(s)	69, 514
HpyF3I	CTNAG	2 cut(s)	132, 1272
HpySE526I	ACGT	2 cut(s)	69, 514
Hsp92II	CATG	8 cut(s)	62, 80, 358, 407, 682, 923, 1058, 1310
Kzo9I	GATC	3 cut(s)	420, 644, 1137
LmnI	GCTCC	3 cut(s)	701, 1127, 1276
Lsp1109I	GCAGC	9 cut(s)	175, 178, 503, 727, 761, 764, 1106, 1109, 1363
LweI	GCATC	5 cut(s)	132, 394, 658, 717, 1033
MaeI	CTAG	3 cut(s)	495, 542, 1193
MaeII	ACGT	2 cut(s)	69, 514
MaeIII	GTNAC	3 cut(s)	340, 424, 1165
MalI	GATC	3 cut(s)	422, 646, 1139
MboI	GATC	3 cut(s)	420, 644, 1137
MboII	GAAGA	6 cut(s)	430, 654, 893, 1140, 1145, 1184
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	2 cut(s)	205, 985
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	1 cut(s)	694
MseI	TTAA	2 cut(s)	858, 894
MslI	CAYNNNNRTG	2 cut(s)	1059, 1297
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	4 cut(s)	706, 777, 950, 1160
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	4 cut(s)	706, 777, 950, 1160
NdeII	GATC	3 cut(s)	420, 644, 1137
NlaIII	CATG	8 cut(s)	62, 80, 358, 407, 682, 923, 1058, 1310
NlaIV	GGNNCC	3 cut(s)	703, 790, 1207
NmuCI	GTSAC	2 cut(s)	424, 1165
NspI	RCATGY	3 cut(s)	358, 682, 1310
NspV	TTCGAA	2 cut(s)	64, 1336
OliI	CACNNNNGTG	1 cut(s)	1297
PaeI	GCATGC	1 cut(s)	1310
PceI	AGGCCT	1 cut(s)	1253
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	826, 1338
PflMI	CCANNNNNTGG	1 cut(s)	656
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PshAI	GACNNNNGTC	1 cut(s)	1211
Psp6I	CCWGG	4 cut(s)	704, 775, 948, 1158
PspGI	CCWGG	4 cut(s)	704, 775, 948, 1158
PspN4I	GGNNCC	3 cut(s)	703, 790, 1207
PspPI	GGNCC	2 cut(s)	454, 1206
PsrI	GAACNNNNNNTAC	2 cut(s)	948, 980
PstI	CTGCAG	3 cut(s)	196, 210, 510
PsuI	RGATCY	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	293, 697, 805, 966
RsaNI	GTAC	4 cut(s)	292, 696, 804, 965
RseI	CAYNNNNRTG	2 cut(s)	1059, 1297
SaqAI	TTAA	2 cut(s)	858, 894
Sau3AI	GATC	3 cut(s)	420, 644, 1137
Sau96I	GGNCC	2 cut(s)	454, 1206
SbfI	CCTGCAGG	1 cut(s)	510
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	4 cut(s)	706, 777, 950, 1160
SdaI	CCTGCAGG	1 cut(s)	510
SduI	GDGCHC	2 cut(s)	205, 985
SfaNI	GCATC	5 cut(s)	132, 394, 658, 717, 1033
SfcI	CTRYAG	4 cut(s)	192, 206, 506, 1355
SfuI	TTCGAA	2 cut(s)	64, 1336
SinI	GGWCC	1 cut(s)	1206
SmiMI	CAYNNNNRTG	2 cut(s)	1059, 1297
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
SphI	GCATGC	1 cut(s)	1310
Sse8387I	CCTGCAGG	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	1253
SsiI	CCGC	5 cut(s)	475, 722, 737, 1081, 1111
SspI	AATATT	1 cut(s)	520
SspMI	CTAG	3 cut(s)	495, 542, 1193
StuI	AGGCCT	1 cut(s)	1253
StyD4I	CCNGG	4 cut(s)	704, 775, 948, 1158
StyI	CCWWGG	1 cut(s)	1254
TaaI	ACNGT	5 cut(s)	346, 373, 808, 990, 1091
TaiI	ACGT	2 cut(s)	72, 517
TaqI	TCGA	2 cut(s)	64, 1336
TatI	WGTACW	2 cut(s)	803, 964
TauI	GCSGC	1 cut(s)	740
TfiI	GAWTC	2 cut(s)	826, 1338
Tru1I	TTAA	2 cut(s)	858, 894
Tru9I	TTAA	2 cut(s)	858, 894
TscAI	CASTG	5 cut(s)	205, 210, 378, 1174, 1291
TseFI	GTSAC	2 cut(s)	424, 1165
TseI	GCWGC	9 cut(s)	188, 191, 491, 740, 749, 752, 1097, 1119, 1351
Tsp45I	GTSAC	2 cut(s)	424, 1165
TspDTI	ATGAA	5 cut(s)	47, 93, 338, 1071, 1250
TspRI	CASTG	5 cut(s)	205, 210, 378, 1174, 1291
Van91I	CCANNNNNTGG	1 cut(s)	656
VneI	GTGCAC	2 cut(s)	201, 981
VpaK11BI	GGWCC	1 cut(s)	1206
XapI	RAATTY	2 cut(s)	81, 330
XceI	RCATGY	3 cut(s)	358, 682, 1310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XspI	CTAG	3 cut(s)	495, 542, 1193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.