Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Reverse (-)

12758820 .. 12766945

Gene Structure 8126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1066300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCATTCATGTTCGGAACGTGGGGCATGAAATTTCTGAACATGAATGATTTGCTTCGGCTATTTCAGCCATTTGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTTATCCAAATGCAAGATACTACTGCTGCAGTCAGTGCACTGCAATTCTATGCAAATGTTCAGCCTGCCCTAAGGGGAAGGAATGTATATGTCCAGTTCTCCTCACATCAAGAACTGACAACAATGTACCAGAATGCTCAAGGACGAGGAAATGAGGTTATGTCAGCTGGTTTTCAGGCCCTAATTCAGTATCAATCCCGACAGAGTGCTATTGCTGCTAGAACTGCTCTGCAGGGACGTAATATTTATGATGGTTGTTGTCAACTAGACATTCAGTTCTCAAACCTTGACGAATTACAAGTGAACTACAATAATGAACGTTCAAGGGATTTCACTAATCCCAATTTGCCTTCAGAACAGATAGGAAGATCCCCGCAACCTGGATATGGTGATGCAGGAGGCATGTATGGCCTTCAAGGTACTGGAGCCAGCGCAGTTGGATTTCCGCAGATGACTAATGCGGCTGCAATTGCGGAAGCCTTTGGTGGAGGTTTGCCTCCTGTTATAAGTGGAACCAATGACTGGTGTACAGTCCTCGTCTCCAATCTGAATCCTGATAAAATAGATGAGGACAAACTTTTTAACCTGTTTTCCATCTATGGAAACATTGTGAGAATTAAACTTCTTCAAAACAAGCCCGACCATGCACTTGTCCAGATGGGTGATGGCTTTCAGGCTGAACTGGCAGTACACTTTCTAAAGAGAAGAAAACGAGGGAATGTTGACAATGCAATGATTCACACGGCCAATCAAACAACAAAAGCCAAAAACAATGTTAAATGGACGTTTTCCCCCTCAGTTAAAAGTTTTACATATTCTCTCATTTCTTCCTCACATTTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

322

Amino Acids

35.56

Weight (kDa)

9.2

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_8	PF11835	97 - 134	2e-09	RRM-like domain
RRM_5	PF13893	204 - 278	2.4e-22	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
AccB7I	CCANNNNNTGG	1 cut(s)	642
AciI	CCGC	4 cut(s)	494, 566, 581, 593
AclI	AACGTT	1 cut(s)	439
AclWI	GGATC	1 cut(s)	483
AcoI	YGGCCR	1 cut(s)	864
AcsI	RAATTY	1 cut(s)	32
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	4 cut(s)	248, 541, 649, 810
AfiI	CCNNNNNNNGG	3 cut(s)	500, 506, 642
AgsI	TTSAA	3 cut(s)	444, 536, 749
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	2 cut(s)	91, 287
AluI	AGCT	2 cut(s)	91, 287
Alw21I	GWGCWC	1 cut(s)	160
Alw26I	GTCTC	1 cut(s)	664
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	483
AoxI	GGCC	3 cut(s)	297, 529, 864
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	3 cut(s)	146, 335, 584
ApoI	RAATTY	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	521, 794
AxyI	CCTNAGG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	3 cut(s)	133, 322, 571
BccI	CCATC	4 cut(s)	365, 722, 772, 779
BceAI	ACGGC	1 cut(s)	879
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	664
BfaI	CTAG	2 cut(s)	339, 386
BfmI	CTRYAG	2 cut(s)	147, 350
BisI	GCNGC	4 cut(s)	147, 336, 582, 585
BlsI	GCNGC	4 cut(s)	148, 337, 583, 586
Bme1390I	CCNGG	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	547, 634
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	87, 502
BpmI	CTGGAG	1 cut(s)	564
BpuEI	CTTGAG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	500, 506, 642
Bse1I	ACTGG	4 cut(s)	214, 547, 647, 807
Bse21I	CCTNAGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	500, 506, 642
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	1 cut(s)	930
BseNI	ACTGG	4 cut(s)	214, 547, 647, 807
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	133, 322, 571
BshFI	GGCC	3 cut(s)	299, 531, 866
BsiHKAI	GWGCWC	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	3 cut(s)	500, 506, 642
BsmAI	GTCTC	1 cut(s)	664
BsmBI	CGTCTC	1 cut(s)	664
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	299, 531, 866
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp1407I	TGTACA	1 cut(s)	647
Bsp143I	GATC	1 cut(s)	488
BspACI	CCGC	4 cut(s)	494, 566, 581, 593
BspANI	GGCC	3 cut(s)	299, 531, 866
BspCNI	CTCAG	1 cut(s)	929
BspLI	GGNNCC	2 cut(s)	547, 634
BspMAI	CTGCAG	2 cut(s)	151, 354
BspPI	GGATC	1 cut(s)	483
BsrDI	GCAATG	1 cut(s)	858
BsrGI	TGTACA	1 cut(s)	647
BsrI	ACTGG	4 cut(s)	214, 547, 647, 807
BssMI	GATC	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	652
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	647
BstC8I	GCNNGC	2 cut(s)	186, 550
BstDEI	CTNAG	3 cut(s)	87, 191, 916
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	1 cut(s)	491
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	1 cut(s)	488
BstMWI	GCNNNNNNNGC	8 cut(s)	67, 97, 155, 335, 344, 528, 590, 803
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	2 cut(s)	147, 350
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	133, 322, 571
BstX2I	RGATCY	1 cut(s)	488
BstYI	RGATCY	1 cut(s)	488
Bsu36I	CCTNAGG	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	299, 531, 866
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 160
Cac8I	GCNNGC	2 cut(s)	186, 550
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	4 cut(s)	247, 540, 648, 809
CviAII	CATG	5 cut(s)	10, 28, 43, 523, 764
CviQI	GTAC	4 cut(s)	247, 540, 648, 809
DdeI	CTNAG	3 cut(s)	87, 191, 916
DpnI	GATC	1 cut(s)	490
DpnII	GATC	1 cut(s)	488
EaeI	YGGCCR	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	456
Eco81I	CCTNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	499
Esp3I	CGTCTC	1 cut(s)	664
FaeI	CATG	5 cut(s)	13, 31, 46, 526, 767
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	5 cut(s)	9, 27, 42, 522, 763
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	147, 336, 582, 585
Fsp4HI	GCNGC	4 cut(s)	147, 336, 582, 585
FspBI	CTAG	2 cut(s)	339, 386
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	4 cut(s)	147, 336, 582, 585
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	299, 531, 866
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	13, 31, 46, 526, 767
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	2 cut(s)	383, 844
HindII	GTYRAC	2 cut(s)	383, 844
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	3 cut(s)	78, 670, 856
HphI	GGTGA	2 cut(s)	521, 794
Hpy166II	GTNNAC	6 cut(s)	158, 383, 424, 648, 811, 844
Hpy188I	TCNGA	4 cut(s)	17, 39, 475, 669
Hpy188III	TCNNGA	4 cut(s)	230, 318, 674, 775
Hpy8I	GTNNAC	6 cut(s)	158, 383, 424, 648, 811, 844
HpyAV	CCTTC	3 cut(s)	192, 480, 542
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	4 cut(s)	20, 358, 439, 905
HpyF10VI	GCNNNNNNNGC	8 cut(s)	67, 97, 155, 335, 344, 528, 590, 803
HpyF3I	CTNAG	3 cut(s)	87, 191, 916
HpySE526I	ACGT	4 cut(s)	20, 358, 439, 905
Hsp92II	CATG	5 cut(s)	13, 31, 46, 526, 767
HspAI	GCGC	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	488
LmnI	GCTCC	1 cut(s)	545
Lsp1109I	GCAGC	3 cut(s)	133, 322, 571
LweI	GCATC	2 cut(s)	87, 502
MaeI	CTAG	2 cut(s)	339, 386
MaeII	ACGT	4 cut(s)	20, 358, 439, 905
MalI	GATC	1 cut(s)	490
MboI	GATC	1 cut(s)	488
MboII	GAAGA	4 cut(s)	498, 737, 837, 939
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	7 cut(s)	32, 164, 303, 413, 463, 588, 735
MlyI	GAGTC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	538
MseI	TTAA	4 cut(s)	702, 738, 897, 921
MspA1I	CMGCKG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	501
MwoI	GCNNNNNNNGC	8 cut(s)	67, 97, 155, 335, 344, 528, 590, 803
NdeII	GATC	1 cut(s)	488
NlaIII	CATG	5 cut(s)	13, 31, 46, 526, 767
NlaIV	GGNNCC	2 cut(s)	547, 634
NspI	RCATGY	1 cut(s)	526
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	670, 856
PflMI	CCANNNNNTGG	1 cut(s)	642
PkrI	GCNGC	4 cut(s)	148, 337, 583, 586
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	626
Psp1406I	AACGTT	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	499
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	547, 634
PspPI	GGNCC	1 cut(s)	298
PsrI	GAACNNNNNNTAC	2 cut(s)	792, 824
PstI	CTGCAG	2 cut(s)	151, 354
PsuI	RGATCY	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	4 cut(s)	248, 541, 649, 810
RsaNI	GTAC	4 cut(s)	247, 540, 648, 809
SaqAI	TTAA	4 cut(s)	702, 738, 897, 921
SatI	GCNGC	4 cut(s)	147, 336, 582, 585
Sau3AI	GATC	1 cut(s)	488
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	160
SfaNI	GCATC	2 cut(s)	87, 502
SfcI	CTRYAG	2 cut(s)	147, 350
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	7 cut(s)	32, 164, 303, 413, 463, 588, 735
SsiI	CCGC	4 cut(s)	494, 566, 581, 593
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	339, 386
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	4 cut(s)	23, 361, 442, 908
TasI	AATT	7 cut(s)	32, 164, 303, 413, 463, 588, 735
TatI	WGTACW	2 cut(s)	647, 808
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	670, 856
Tru1I	TTAA	4 cut(s)	702, 738, 897, 921
Tru9I	TTAA	4 cut(s)	702, 738, 897, 921
TscAI	CASTG	2 cut(s)	160, 165
TseI	GCWGC	3 cut(s)	146, 335, 584
TspDTI	ATGAA	3 cut(s)	44, 59, 450
TspRI	CASTG	2 cut(s)	160, 165
Van91I	CCANNNNNTGG	1 cut(s)	642
VneI	GTGCAC	1 cut(s)	156
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XspI	CTAG	2 cut(s)	339, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.