Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Forward (+)

35891345 .. 35899210

Gene Structure 7866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG199200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGCTTCGTGCAAAAAACCAGGCTCTTATTCAAATGCAGGATACTGCAGCAGCAGTAAGTGCGTTGCAATTCTATGCAAATGTTCAACCTGCCGTGAGGGGAAGGAATGTTTATGTCCAGTTCTCATCACATCAAGAACTAACAACAATGTATCAAAATGCTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAGTCCACCACATGCTATATCCTATAACAGTGGAAGTGCTGCATCAAGTATTTTTTCCTCATGGATTTGTAGAGAAGATTGTCACATTCCAGAAGTCAGCTGGTTTTCAGGCCCTCATTCAGTATCAGTCTCGCCAAAGTGCCGTTGCAGCTAGAACTGCACTGCAGGGACGCAATATTTACGATGGTTGTTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAGTTGCAAGTGAACTACAATAATGAGCGTTCAAGGGATTTCACAAATCCAAATTTGCCTTCGGAACAGAAAGGAAAATCCCCGCAACCTGGATATGGTGATTCAGGAGGCATGTATGGCCTTCAAGCTACTGGAGCCAGGGCAGTTGGATTCCCACAGATGGCTAACGCGGCTGCGATTGCTGCTGCCTTTGGTGGAGGTTTGCCTCCTGGTATAAGTGGGACAAATGACAGGTGTACGGTCCTTGTTTCAAACTTGAATCCCGATAGAATAGATGAAGATAAGCTTTTTAACCTGTTCTCCATTTATGGAAACATTGTGAGAATTAAGCTTCTTCGGAACAAACCAGATCATGCACTCGTCCAGATGGGTGATGGCTTCCAGGCTGAACTGGCAGTACACTTTTTAAAGGGTGCAATCCTGTTTGGGAAGCGATTGGAGGTTAACTTCTCAAAGCATCCGAATATAACTCAGGGTGCCGACACTCATGAATACATGAATTCAAATCTCAACCGCTTCAACCGTAATGCTGCAAAGAACTACCGCTATTGCTGCTCGCCTACAAAGATGATCCACTTGTCCTCTCTTCCACAAGAAGTCGCTGAAGATGAGATTGTGACCCACCTAGAGGATATTGGTACCATTGTCAACACAAAGCTCTTTGAGATGAACGGGAAGAAGCAGGCCTTAGTTCTGTTTGAAACTGAGGAGCAGGCCACCGAAGCCCTTGTGTGCAAGCATGCTACCTCGCTTGGTGGGTCAATTATCCGGATCTCCTTTTCACAGTTACAGGCAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

408

Amino Acids

45.17

Weight (kDa)

7.68

Isoelectric Point (pI)

38.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_8	PF11835	60 - 139	1.9e-21	RRM-like domain
RRM_5	PF13893	204 - 306	1e-32	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	223 - 288	1.7e-06	RNA recognition motif
RRM_1	PF00076	336 - 398	4.6e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
Acc65I	GGTACC	1 cut(s)	1064
AccB1I	GGYRCC	2 cut(s)	902, 1064
AccII	CGCG	1 cut(s)	596
AccIII	TCCGGA	1 cut(s)	1194
AciI	CCGC	4 cut(s)	509, 596, 940, 970
AclWI	GGATC	2 cut(s)	991, 1205
AcsI	RAATTY	3 cut(s)	189, 478, 925
AcuI	CTGAAG	1 cut(s)	1050
AfaI	GTAC	3 cut(s)	664, 825, 1066
AfiI	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1054
AgsI	TTSAA	9 cut(s)	32, 86, 459, 551, 678, 685, 930, 946, 1127
AjnI	CCWGG	5 cut(s)	18, 514, 563, 634, 807
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
AluBI	AGCT	7 cut(s)	302, 353, 400, 554, 712, 757, 1084
AluI	AGCT	7 cut(s)	302, 353, 400, 554, 712, 757, 1084
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	2 cut(s)	991, 1205
Aor13HI	TCCGGA	1 cut(s)	1194
AoxI	GGCC	4 cut(s)	312, 544, 1110, 1140
ApeKI	GCWGC	9 cut(s)	47, 50, 241, 350, 599, 608, 611, 956, 978
ApoI	RAATTY	3 cut(s)	189, 478, 925
Asp718I	GGTACC	1 cut(s)	1064
AspS9I	GGNCC	2 cut(s)	313, 667
AsuHPI	GGTGA	2 cut(s)	536, 809
AvaII	GGWCC	1 cut(s)	667
BaeI	ACNNNNGTAYC	2 cut(s)	1056, 1089
BanI	GGYRCC	2 cut(s)	902, 1064
BbvI	GCAGC	9 cut(s)	59, 62, 228, 362, 586, 595, 598, 943, 965
BccI	CCATC	4 cut(s)	380, 580, 787, 794
BceAI	ACGGC	2 cut(s)	77, 329
BciT130I	CCWGG	5 cut(s)	20, 516, 565, 636, 809
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	354, 1052
BfmI	CTRYAG	2 cut(s)	45, 365
BfuAI	ACCTGC	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	34
Bme1390I	CCNGG	5 cut(s)	20, 516, 565, 636, 809
Bme18I	GGWCC	1 cut(s)	667
BmgT120I	GGNCC	2 cut(s)	313, 667
BmiI	GGNNCC	3 cut(s)	562, 904, 1066
BmrFI	CCNGG	5 cut(s)	20, 516, 565, 636, 809
BmsI	GCATC	2 cut(s)	253, 892
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	1194
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1054
Bse1I	ACTGG	3 cut(s)	118, 562, 822
BseAI	TCCGGA	1 cut(s)	1194
BseBI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	883
BseLI	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1054
BseMII	CTCAG	2 cut(s)	911, 1122
BseNI	ACTGG	3 cut(s)	118, 562, 822
BseRI	GAGGAG	2 cut(s)	186, 1148
BseXI	GCAGC	9 cut(s)	59, 62, 228, 362, 586, 595, 598, 943, 965
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	4 cut(s)	314, 546, 1112, 1142
BshNI	GGYRCC	2 cut(s)	902, 1064
BsiSI	CCGG	1 cut(s)	1195
BslFI	GGGAC	2 cut(s)	384, 661
BslI	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1054
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	2 cut(s)	384, 661
BsnI	GGCC	4 cut(s)	314, 546, 1112, 1142
Bsp13I	TCCGGA	1 cut(s)	1194
Bsp143I	GATC	3 cut(s)	775, 996, 1197
BspACI	CCGC	4 cut(s)	509, 596, 940, 970
BspANI	GGCC	4 cut(s)	314, 546, 1112, 1142
BspCNI	CTCAG	2 cut(s)	910, 1123
BspEI	TCCGGA	1 cut(s)	1194
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	562, 904, 1066
BspMAI	CTGCAG	2 cut(s)	49, 369
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	2 cut(s)	991, 1205
BspT107I	GGYRCC	2 cut(s)	902, 1064
BsrI	ACTGG	3 cut(s)	118, 562, 822
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	3 cut(s)	775, 996, 1197
Bst2UI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
Bst4CI	ACNGT	5 cut(s)	205, 232, 667, 950, 1212
Bst6I	CTCTTC	1 cut(s)	1017
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	5 cut(s)	983, 1110, 1140, 1163, 1167
BstDEI	CTNAG	4 cut(s)	196, 897, 1114, 1131
BstF5I	GGATG	1 cut(s)	883
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	3 cut(s)	778, 999, 1200
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	775, 996, 1197
BstNI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
BstNSI	RCATGY	3 cut(s)	217, 541, 1169
BstSCI	CCNGG	5 cut(s)	18, 514, 563, 634, 807
BstSFI	CTRYAG	2 cut(s)	45, 365
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	9 cut(s)	59, 62, 228, 362, 586, 595, 598, 943, 965
BstX2I	RGATCY	1 cut(s)	1197
BstYI	RGATCY	1 cut(s)	1197
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	314, 546, 1112, 1142
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	2 cut(s)	237, 362
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	5 cut(s)	983, 1110, 1140, 1163, 1167
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	2 cut(s)	313, 667
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	663, 824, 1065
CviAII	CATG	7 cut(s)	214, 263, 538, 779, 914, 922, 1166
CviQI	GTAC	3 cut(s)	663, 824, 1065
DdeI	CTNAG	4 cut(s)	196, 897, 1114, 1131
DpnI	GATC	3 cut(s)	777, 998, 1199
DpnII	GATC	3 cut(s)	775, 996, 1197
DraI	TTTAAA	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	1017
EarI	CTCTTC	1 cut(s)	1017
Eco147I	AGGCCT	1 cut(s)	1112
Eco47I	GGWCC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	1050
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	2 cut(s)	189, 925
EcoRII	CCWGG	5 cut(s)	18, 514, 563, 634, 807
FaeI	CATG	7 cut(s)	217, 266, 541, 782, 917, 925, 1169
FalI	AAGNNNNNCTT	4 cut(s)	696, 728, 1097, 1129
FaqI	GGGAC	2 cut(s)	384, 661
FatI	CATG	7 cut(s)	213, 262, 537, 778, 913, 921, 1165
FauI	CCCGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	870
FspBI	CTAG	2 cut(s)	354, 1052
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	314, 546, 1112, 1142
HapII	CCGG	1 cut(s)	1195
HgaI	GACGC	1 cut(s)	381
Hin1II	CATG	7 cut(s)	217, 266, 541, 782, 917, 925, 1169
HincII	GTYRAC	2 cut(s)	871, 1075
HindII	GTYRAC	2 cut(s)	871, 1075
HindIII	AAGCTT	2 cut(s)	710, 755
HinfI	GANTC	3 cut(s)	527, 576, 685
HpaI	GTTAAC	1 cut(s)	871
HpaII	CCGG	1 cut(s)	1195
HphI	GGTGA	2 cut(s)	536, 809
Hpy166II	GTNNAC	6 cut(s)	208, 439, 663, 826, 871, 1075
Hpy188I	TCNGA	3 cut(s)	490, 765, 888
Hpy188III	TCNNGA	7 cut(s)	134, 292, 531, 689, 790, 914, 1195
Hpy8I	GTNNAC	6 cut(s)	208, 439, 663, 826, 871, 1075
HpyAV	CCTTC	3 cut(s)	96, 495, 557
HpyCH4III	ACNGT	5 cut(s)	205, 232, 667, 950, 1212
HpyF3I	CTNAG	4 cut(s)	196, 897, 1114, 1131
Hsp92II	CATG	7 cut(s)	217, 266, 541, 782, 917, 925, 1169
Kpn2I	TCCGGA	1 cut(s)	1194
KpnI	GGTACC	1 cut(s)	1068
KspAI	GTTAAC	1 cut(s)	871
Kzo9I	GATC	3 cut(s)	775, 996, 1197
LmnI	GCTCC	2 cut(s)	560, 1135
Lsp1109I	GCAGC	9 cut(s)	59, 62, 228, 362, 586, 595, 598, 943, 965
LweI	GCATC	2 cut(s)	253, 892
MaeI	CTAG	2 cut(s)	354, 1052
MaeIII	GTNAC	4 cut(s)	199, 283, 1042, 1212
MalI	GATC	3 cut(s)	777, 998, 1199
MboI	GATC	3 cut(s)	775, 996, 1197
MboII	GAAGA	6 cut(s)	289, 716, 752, 1004, 1043, 1114
MflI	RGATCY	1 cut(s)	1197
MluCI	AATT	6 cut(s)	68, 189, 478, 750, 925, 1188
MmeI	TCCRAC	1 cut(s)	553
MroI	TCCGGA	1 cut(s)	1194
MseI	TTAA	4 cut(s)	717, 753, 833, 870
MspA1I	CMGCKG	2 cut(s)	302, 400
MspI	CCGG	1 cut(s)	1195
MspR9I	CCNGG	5 cut(s)	20, 516, 565, 636, 809
MvaI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
MvnI	CGCG	1 cut(s)	596
NdeII	GATC	3 cut(s)	775, 996, 1197
NlaIII	CATG	7 cut(s)	217, 266, 541, 782, 917, 925, 1169
NlaIV	GGNNCC	3 cut(s)	562, 904, 1066
NmuCI	GTSAC	2 cut(s)	283, 1042
NspI	RCATGY	3 cut(s)	217, 541, 1169
PaeI	GCATGC	1 cut(s)	1169
PagI	TCATGA	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	1112
PfeI	GAWTC	3 cut(s)	527, 576, 685
Psp6I	CCWGG	5 cut(s)	18, 514, 563, 634, 807
PspGI	CCWGG	5 cut(s)	18, 514, 563, 634, 807
PspN4I	GGNNCC	3 cut(s)	562, 904, 1066
PspPI	GGNCC	2 cut(s)	313, 667
PsrI	GAACNNNNNNTAC	2 cut(s)	807, 839
PstI	CTGCAG	2 cut(s)	49, 369
PsuI	RGATCY	1 cut(s)	1197
PvuII	CAGCTG	2 cut(s)	302, 400
RsaI	GTAC	3 cut(s)	664, 825, 1066
RsaNI	GTAC	3 cut(s)	663, 824, 1065
SaqAI	TTAA	4 cut(s)	717, 753, 833, 870
Sau3AI	GATC	3 cut(s)	775, 996, 1197
Sau96I	GGNCC	2 cut(s)	313, 667
ScrFI	CCNGG	5 cut(s)	20, 516, 565, 636, 809
SfaNI	GCATC	2 cut(s)	253, 892
SfcI	CTRYAG	2 cut(s)	45, 365
SinI	GGWCC	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	1169
Sse9I	AATT	6 cut(s)	68, 189, 478, 750, 925, 1188
SseBI	AGGCCT	1 cut(s)	1112
SsiI	CCGC	4 cut(s)	509, 596, 940, 970
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	354, 1052
StuI	AGGCCT	1 cut(s)	1112
StyD4I	CCNGG	5 cut(s)	18, 514, 563, 634, 807
TaaI	ACNGT	5 cut(s)	205, 232, 667, 950, 1212
TasI	AATT	6 cut(s)	68, 189, 478, 750, 925, 1188
TatI	WGTACW	1 cut(s)	823
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	527, 576, 685
Tru1I	TTAA	4 cut(s)	717, 753, 833, 870
Tru9I	TTAA	4 cut(s)	717, 753, 833, 870
TscAI	CASTG	2 cut(s)	237, 369
TseFI	GTSAC	2 cut(s)	283, 1042
TseI	GCWGC	9 cut(s)	47, 50, 241, 350, 599, 608, 611, 956, 978
Tsp45I	GTSAC	2 cut(s)	283, 1042
TspDTI	ATGAA	4 cut(s)	717, 930, 938, 1109
TspRI	CASTG	2 cut(s)	237, 369
VpaK11BI	GGWCC	1 cut(s)	667
XapI	RAATTY	3 cut(s)	189, 478, 925
XceI	RCATGY	3 cut(s)	217, 541, 1169
XcmI	CCANNNNNNNNNTGG	2 cut(s)	299, 797
XspI	CTAG	2 cut(s)	354, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.