Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Reverse (-)

12758548 .. 12758816

Gene Structure 269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1066200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCAGGGTGCACTACTGTTTGGGAAGCGATTGGAGGTCAACTTCTCGAAGCATCCAAATATAATGCAAGGTGCTGACACACATGAATATGTGAACTCAAATCTCAACCGCTTCAACCGTAATGCAGCAAAGAACTACCGGTATTGCTGCTCTCCTACAAAGATGATCCACTTGTCTTCTCTTCCCCAGGAAGTCACCGAAGAGGAGATTGTGAGCCACCTGGAGGAAGCAGGCCTTGGTTATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

83

Amino Acids

9.34

Weight (kDa)

6.4

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	186, 219
AjuI	GAANNNNNNNTTGG	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	13
Alw44I	GTGCAC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	160
AoxI	GGCC	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	125, 147
AsiGI	ACCGGT	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	134, 137
BciT130I	CCWGG	2 cut(s)	188, 221
BisI	GCNGC	2 cut(s)	126, 148
BlsI	GCNGC	2 cut(s)	127, 149
Bme1390I	CCNGG	2 cut(s)	188, 221
BmrFI	CCNGG	2 cut(s)	188, 221
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	186, 235
BsaWI	WCCGGW	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	188, 221
BseDI	CCNNGG	2 cut(s)	186, 235
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	134, 137
BshFI	GGCC	1 cut(s)	234
BshTI	ACCGGT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	1 cut(s)	234
BspPI	GGATC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	138
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	186, 235
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	1 cut(s)	235
Bst2UI	CCWGG	2 cut(s)	188, 221
Bst4CI	ACNGT	2 cut(s)	18, 119
Bst6I	CTCTTC	2 cut(s)	186, 195
BstC8I	GCNNGC	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstNI	CCWGG	2 cut(s)	188, 221
BstSCI	CCNGG	2 cut(s)	186, 219
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	2 cut(s)	134, 137
BstV2I	GAAGAC	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	232
Cfr10I	RCCGGY	1 cut(s)	138
CspAI	ACCGGT	1 cut(s)	138
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	2 cut(s)	216, 234
CviKI_1	RGCY	2 cut(s)	216, 234
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
Eam1104I	CTCTTC	2 cut(s)	186, 195
EarI	CTCTTC	2 cut(s)	186, 195
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	186, 219
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	1 cut(s)	86
FaiI	YATR	4 cut(s)	62, 84, 90, 243
FalI	AAGNNNNNCTT	1 cut(s)	219
FatI	CATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	126, 148
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	126, 148
GluI	GCNGC	2 cut(s)	126, 148
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	139
Hin1II	CATG	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HpaII	CCGG	1 cut(s)	139
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	11, 40, 94
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	3 cut(s)	11, 40, 94
HpyCH4III	ACNGT	2 cut(s)	18, 119
HpyCH4V	TGCA	4 cut(s)	4, 11, 67, 125
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	165
LpnPI	CCDG	6 cut(s)	152, 173, 200, 206, 216, 233
Lsp1109I	GCAGC	2 cut(s)	134, 137
LweI	GCATC	1 cut(s)	61
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	168, 173, 212
MhlI	GDGCHC	1 cut(s)	13
MnlI	CCTC	3 cut(s)	28, 196, 217
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	2 cut(s)	188, 221
MvaI	CCWGG	2 cut(s)	188, 221
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	86
NmuCI	GTSAC	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	234
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	2 cut(s)	127, 149
Psp6I	CCWGG	2 cut(s)	186, 219
PspGI	CCWGG	2 cut(s)	186, 219
RseI	CAYNNNNRTG	1 cut(s)	87
SatI	GCNGC	2 cut(s)	126, 148
Sau3AI	GATC	1 cut(s)	165
ScrFI	CCNGG	2 cut(s)	188, 221
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	3 cut(s)	39, 73, 222
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	87
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	109
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	186, 219
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	18, 119
TaqI	TCGA	1 cut(s)	47
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	2 cut(s)	125, 147
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	99
VneI	GTGCAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.