Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013532.1

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Reverse (-)

37481 .. 42024

Gene Structure 4544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013532.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgcttcgtgcaaaaaaccaggctcttattcaaatgcaggatactgctgctgcagtaagtgcattgcaattctatgcaaatgttcaacctgccgtgaggggaaggaatgtttatgtccagttctcatcacatcaagaactaacaacaatgtatcaaaatgctcaaggacgaggagatgagccaaaccgaattctcttagttacagtccaccacatgctatatcctataacagtggaagtgctgcatcaagtattttttcctcatggatttgtagagaagattgtcacattccagaagtcagctggttttcaggccctcattcagtatcagtcccgccaaagtgccgttgcagctagaactgcactgcagggacgcaatatttacgatggttgttgtcagctggacattcagttctcaaaccttgatgagttgcaagtgaactacaataatgagcgttcaagggatttcacaaatccaaatttgccttcggaacagaaaggaaaatccccgcaacctggatatggtgattcaggaggcatgtatggccttcaagctactggagccagggcagttggattcccacagatggctaacgcggctgcgattgctgctgcctttggtggaggtttgcctcctggtataagtgggacaaatgacaggtgtacgatccttgtttcaaacttgaatcccgatagaatagatgaagataagctttttaacctgttctccatttatggaaacattgtgagaattaagcttcttcggaacaaaccagatcatgcactcgtccagatgggtgatggcttccaggctgaactggcaggtgcaatcctgtttgggaagcgattggaggttaacttctcaaagcatccgaatataactcagggtgccgacactcatgaatacatgaattcaaatctcaaccgcttcaaccgtaatgctgcaaagaactaccgctattgctgctcgcctacaaagatgatccatttgtcctctcttccacaagaagtcgctgaagatgagattgtgacccacctagaggatattggtaccattgtcaacacaaagctctttgagatgaacgggaagaagcaggccttagttctgtttgaaactgaggagcaggccactgaagcccttgtgtgcaagcatgctacctcacttggtgggtcaattatccggatctccttttcacagttacaggcaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

403

Amino Acids

44.56

Weight (kDa)

7.17

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	812
Acc36I	ACCTGC	2 cut(s)	97, 812
Acc65I	GGTACC	1 cut(s)	1049
AccB1I	GGYRCC	2 cut(s)	887, 1049
AccII	CGCG	1 cut(s)	596
AccIII	TCCGGA	1 cut(s)	1179
AciI	CCGC	5 cut(s)	334, 509, 596, 925, 955
AclWI	GGATC	3 cut(s)	661, 976, 1190
AcsI	RAATTY	3 cut(s)	189, 478, 910
AcuI	CTGAAG	2 cut(s)	1035, 1152
AdeI	CACNNNGTG	1 cut(s)	1166
AfaI	GTAC	2 cut(s)	664, 1051
AfiI	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1039
AgsI	TTSAA	9 cut(s)	32, 86, 459, 551, 678, 685, 915, 931, 1112
AjnI	CCWGG	5 cut(s)	18, 514, 563, 634, 807
AjuI	GAANNNNNNNTTGG	2 cut(s)	469, 501
AloI	GAACNNNNNNTCC	2 cut(s)	395, 427
AluBI	AGCT	7 cut(s)	302, 353, 400, 554, 712, 757, 1069
AluI	AGCT	7 cut(s)	302, 353, 400, 554, 712, 757, 1069
AlwI	GGATC	3 cut(s)	661, 976, 1190
Aor13HI	TCCGGA	1 cut(s)	1179
AoxI	GGCC	4 cut(s)	312, 544, 1095, 1125
ApeKI	GCWGC	9 cut(s)	47, 50, 241, 350, 599, 608, 611, 941, 963
ApoI	RAATTY	3 cut(s)	189, 478, 910
Asp718I	GGTACC	1 cut(s)	1049
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	2 cut(s)	536, 809
BaeI	ACNNNNGTAYC	2 cut(s)	1041, 1074
BanI	GGYRCC	2 cut(s)	887, 1049
BbvI	GCAGC	9 cut(s)	34, 37, 228, 362, 586, 595, 598, 928, 950
BccI	CCATC	4 cut(s)	380, 580, 787, 794
BceAI	ACGGC	2 cut(s)	77, 329
BciT130I	CCWGG	5 cut(s)	20, 516, 565, 636, 809
BciVI	GTATCC	1 cut(s)	34
BfaI	CTAG	2 cut(s)	354, 1037
BfmI	CTRYAG	2 cut(s)	51, 365
BfuAI	ACCTGC	2 cut(s)	97, 812
BfuI	GTATCC	1 cut(s)	34
Bme1390I	CCNGG	5 cut(s)	20, 516, 565, 636, 809
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	3 cut(s)	562, 889, 1051
BmrFI	CCNGG	5 cut(s)	20, 516, 565, 636, 809
BmsI	GCATC	2 cut(s)	253, 877
BpmI	CTGGAG	1 cut(s)	579
BpuEI	CTTGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1039
Bse1I	ACTGG	3 cut(s)	118, 562, 822
Bse3DI	GCAATG	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	1179
BseBI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	868
BseLI	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1039
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	2 cut(s)	896, 1107
BseNI	ACTGG	3 cut(s)	118, 562, 822
BseRI	GAGGAG	2 cut(s)	186, 1133
BseXI	GCAGC	9 cut(s)	34, 37, 228, 362, 586, 595, 598, 928, 950
BsgI	GTGCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	4 cut(s)	314, 546, 1097, 1127
BshNI	GGYRCC	2 cut(s)	887, 1049
BsiSI	CCGG	1 cut(s)	1180
BslFI	GGGAC	3 cut(s)	316, 384, 661
BslI	CCNNNNNNNGG	4 cut(s)	515, 521, 586, 1039
BsmFI	GGGAC	3 cut(s)	316, 384, 661
BsnI	GGCC	4 cut(s)	314, 546, 1097, 1127
Bsp13I	TCCGGA	1 cut(s)	1179
Bsp143I	GATC	4 cut(s)	666, 775, 981, 1182
BspACI	CCGC	5 cut(s)	334, 509, 596, 925, 955
BspANI	GGCC	4 cut(s)	314, 546, 1097, 1127
BspCNI	CTCAG	2 cut(s)	895, 1108
BspEI	TCCGGA	1 cut(s)	1179
BspFNI	CGCG	1 cut(s)	596
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	3 cut(s)	562, 889, 1051
BspMAI	CTGCAG	2 cut(s)	55, 369
BspMI	ACCTGC	2 cut(s)	97, 812
BspPI	GGATC	3 cut(s)	661, 976, 1190
BspT107I	GGYRCC	2 cut(s)	887, 1049
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	118, 562, 822
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	666, 775, 981, 1182
Bst2UI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
Bst4CI	ACNGT	4 cut(s)	205, 232, 935, 1197
Bst6I	CTCTTC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstC8I	GCNNGC	5 cut(s)	968, 1095, 1125, 1148, 1152
BstDEI	CTNAG	4 cut(s)	196, 882, 1099, 1116
BstF5I	GGATG	1 cut(s)	868
BstFNI	CGCG	1 cut(s)	596
BstKTI	GATC	4 cut(s)	669, 778, 984, 1185
BstMBI	GATC	4 cut(s)	666, 775, 981, 1182
BstNI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
BstNSI	RCATGY	3 cut(s)	217, 541, 1154
BstSCI	CCNGG	5 cut(s)	18, 514, 563, 634, 807
BstSFI	CTRYAG	2 cut(s)	51, 365
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	9 cut(s)	34, 37, 228, 362, 586, 595, 598, 928, 950
BstX2I	RGATCY	1 cut(s)	1182
BstYI	RGATCY	1 cut(s)	1182
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	4 cut(s)	314, 546, 1097, 1127
BtsCI	GGATG	1 cut(s)	868
BtsI	GCAGTG	1 cut(s)	362
BtsIMutI	CAGTG	3 cut(s)	237, 362, 1128
BveI	ACCTGC	2 cut(s)	97, 812
Cac8I	GCNNGC	5 cut(s)	968, 1095, 1125, 1148, 1152
CciI	TCATGA	1 cut(s)	898
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	663, 1050
CviAII	CATG	7 cut(s)	214, 263, 538, 779, 899, 907, 1151
CviQI	GTAC	2 cut(s)	663, 1050
DdeI	CTNAG	4 cut(s)	196, 882, 1099, 1116
DpnI	GATC	4 cut(s)	668, 777, 983, 1184
DpnII	GATC	4 cut(s)	666, 775, 981, 1182
DraIII	CACNNNGTG	1 cut(s)	1166
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
Eco147I	AGGCCT	1 cut(s)	1097
Eco57I	CTGAAG	2 cut(s)	1035, 1152
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRI	GAATTC	2 cut(s)	189, 910
EcoRII	CCWGG	5 cut(s)	18, 514, 563, 634, 807
FaeI	CATG	7 cut(s)	217, 266, 541, 782, 902, 910, 1154
FalI	AAGNNNNNCTT	4 cut(s)	696, 728, 1082, 1114
FaqI	GGGAC	3 cut(s)	316, 384, 661
FatI	CATG	7 cut(s)	213, 262, 537, 778, 898, 906, 1150
FauI	CCCGC	2 cut(s)	341, 516
FokI	GGATG	1 cut(s)	855
FspBI	CTAG	2 cut(s)	354, 1037
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	314, 546, 1097, 1127
HapII	CCGG	1 cut(s)	1180
HgaI	GACGC	1 cut(s)	381
Hin1II	CATG	7 cut(s)	217, 266, 541, 782, 902, 910, 1154
HincII	GTYRAC	2 cut(s)	856, 1060
HindII	GTYRAC	2 cut(s)	856, 1060
HindIII	AAGCTT	2 cut(s)	710, 755
HinfI	GANTC	3 cut(s)	527, 576, 685
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	1180
HphI	GGTGA	2 cut(s)	536, 809
Hpy166II	GTNNAC	5 cut(s)	208, 439, 663, 856, 1060
Hpy188I	TCNGA	3 cut(s)	490, 765, 873
Hpy188III	TCNNGA	7 cut(s)	134, 292, 531, 689, 790, 899, 1180
Hpy8I	GTNNAC	5 cut(s)	208, 439, 663, 856, 1060
HpyAV	CCTTC	3 cut(s)	96, 495, 557
HpyCH4III	ACNGT	4 cut(s)	205, 232, 935, 1197
HpyF3I	CTNAG	4 cut(s)	196, 882, 1099, 1116
Hsp92II	CATG	7 cut(s)	217, 266, 541, 782, 902, 910, 1154
Kpn2I	TCCGGA	1 cut(s)	1179
KpnI	GGTACC	1 cut(s)	1053
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	666, 775, 981, 1182
LmnI	GCTCC	2 cut(s)	560, 1120
Lsp1109I	GCAGC	9 cut(s)	34, 37, 228, 362, 586, 595, 598, 928, 950
LweI	GCATC	2 cut(s)	253, 877
MaeI	CTAG	2 cut(s)	354, 1037
MaeIII	GTNAC	4 cut(s)	199, 283, 1027, 1197
MalI	GATC	4 cut(s)	668, 777, 983, 1184
MboI	GATC	4 cut(s)	666, 775, 981, 1182
MboII	GAAGA	6 cut(s)	289, 716, 752, 989, 1028, 1099
MflI	RGATCY	1 cut(s)	1182
MluCI	AATT	6 cut(s)	68, 189, 478, 750, 910, 1173
MmeI	TCCRAC	1 cut(s)	553
MroI	TCCGGA	1 cut(s)	1179
MseI	TTAA	3 cut(s)	717, 753, 855
MspA1I	CMGCKG	2 cut(s)	302, 400
MspI	CCGG	1 cut(s)	1180
MspR9I	CCNGG	5 cut(s)	20, 516, 565, 636, 809
MvaI	CCWGG	5 cut(s)	20, 516, 565, 636, 809
MvnI	CGCG	1 cut(s)	596
NdeII	GATC	4 cut(s)	666, 775, 981, 1182
NlaIII	CATG	7 cut(s)	217, 266, 541, 782, 902, 910, 1154
NlaIV	GGNNCC	3 cut(s)	562, 889, 1051
NmuCI	GTSAC	2 cut(s)	283, 1027
NspI	RCATGY	3 cut(s)	217, 541, 1154
PaeI	GCATGC	1 cut(s)	1154
PagI	TCATGA	1 cut(s)	898
PaqCI	CACCTGC	1 cut(s)	812
PceI	AGGCCT	1 cut(s)	1097
PfeI	GAWTC	3 cut(s)	527, 576, 685
Psp6I	CCWGG	5 cut(s)	18, 514, 563, 634, 807
PspGI	CCWGG	5 cut(s)	18, 514, 563, 634, 807
PspN4I	GGNNCC	3 cut(s)	562, 889, 1051
PspPI	GGNCC	1 cut(s)	313
PstI	CTGCAG	2 cut(s)	55, 369
PsuI	RGATCY	1 cut(s)	1182
PvuII	CAGCTG	2 cut(s)	302, 400
RsaI	GTAC	2 cut(s)	664, 1051
RsaNI	GTAC	2 cut(s)	663, 1050
SaqAI	TTAA	3 cut(s)	717, 753, 855
Sau3AI	GATC	4 cut(s)	666, 775, 981, 1182
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	5 cut(s)	20, 516, 565, 636, 809
SfaNI	GCATC	2 cut(s)	253, 877
SfcI	CTRYAG	2 cut(s)	51, 365
SmlI	CTYRAG	1 cut(s)	162
SmoI	CTYRAG	1 cut(s)	162
SphI	GCATGC	1 cut(s)	1154
Sse9I	AATT	6 cut(s)	68, 189, 478, 750, 910, 1173
SseBI	AGGCCT	1 cut(s)	1097
SsiI	CCGC	5 cut(s)	334, 509, 596, 925, 955
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	2 cut(s)	354, 1037
StuI	AGGCCT	1 cut(s)	1097
StyD4I	CCNGG	5 cut(s)	18, 514, 563, 634, 807
TaaI	ACNGT	4 cut(s)	205, 232, 935, 1197
TasI	AATT	6 cut(s)	68, 189, 478, 750, 910, 1173
TauI	GCSGC	1 cut(s)	599
TfiI	GAWTC	3 cut(s)	527, 576, 685
Tru1I	TTAA	3 cut(s)	717, 753, 855
Tru9I	TTAA	3 cut(s)	717, 753, 855
TscAI	CASTG	3 cut(s)	237, 369, 1135
TseFI	GTSAC	2 cut(s)	283, 1027
TseI	GCWGC	9 cut(s)	47, 50, 241, 350, 599, 608, 611, 941, 963
Tsp45I	GTSAC	2 cut(s)	283, 1027
TspDTI	ATGAA	4 cut(s)	717, 915, 923, 1094
TspRI	CASTG	3 cut(s)	237, 369, 1135
XapI	RAATTY	3 cut(s)	189, 478, 910
XceI	RCATGY	3 cut(s)	217, 541, 1154
XcmI	CCANNNNNNNNNTGG	2 cut(s)	299, 797
XspI	CTAG	2 cut(s)	354, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.