Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Reverse (-)

86587 .. 96418

Gene Structure 9832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006223.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

atggggttgctggcttcggcttttcgaccaaaagaagcagtggcttctgccaaaagccaggcaaaagcacatttaccaaacgtacacagggcttctgcaatgacagaaccttccaaagtcattcacgttcggaatgtggggcatgaaatttctgaaaatgatttgcttcagctatttcagccctttggagtcataactaagcttgtgatgcttcgtgcaaaaaaccaggctcttattcaaatgcaggatactgctgctgcagtaagtgcattgcaattctatgcaaatgttcaacctgccgtgaggggaaggaatgtttatgtccagttctcatcacatcaagaactaacaacaatgtatcaaaatgctcaaggacgaggagatgagccaaaccgaattctcttagttacagtccaccacatgctatatcctataacagtggaagtgctgcatcaagtattttttcctcatggatttgtagagaagattgtcacattccagaagtcagctggttttcaggccctcattcagtatcagtctcgccaaagtgccgttgcagctagaactgcactgcagggacgcaatatttacgatggttgttgtcagctggacattcagttctcaaaccttgatgagttgcaagtgaactacaataatgagcgttcaagggatttcacaaatccaaatttgccttcggaacagaaaggaaaatccccgcaacctggatatggtgattcaggaggcatgtatggccttcaagctactggagccagggcagttggattcccacagatggctaacgcggctgcgattgctgctgcctttggtggaggttttcctcctggtataagtgggacaaatgacaggtgtacggtccttgtttcaaacttgaatcccgatagaatagatgaagataagctttttaacctgttctccatttatggaaacattgtgagaattaagcttcttcggaacaaaccagataatgcactcgtccagatgggtgatggcttccaggctgaactggcaggtgcaatcctgtttgggaagcgattggaggttaacttctcaaagcatccaaatataactcagggtgccgacactcatgaatacatgaattcaaatctcaaccgcttcaaccgtaatgctgcaaaaaactaccgctattgctgctcgcctacaaagatgatccacttgtcctctcttccacaagaagtcgctgaagatgagattgtgacccacctagaggatattggtaccattgtcaacacaaagctctttgagatgaacgggaagaaacaggccttagttctgtttgaaactgaggagcaggccactgaagcccttgtgtgcaagcatgctacctcgcttggtgggtcaattatccggatctccttttcacagttacaggcaatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

472

Amino Acids

52.03

Weight (kDa)

8.41

Isoelectric Point (pI)

39.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1019
Acc36I	ACCTGC	2 cut(s)	304, 1019
Acc65I	GGTACC	1 cut(s)	1256
AccB1I	GGYRCC	2 cut(s)	1094, 1256
AccII	CGCG	1 cut(s)	803
AccIII	TCCGGA	1 cut(s)	1386
AciI	CCGC	4 cut(s)	716, 803, 1132, 1162
AclWI	GGATC	2 cut(s)	1183, 1397
AcsI	RAATTY	4 cut(s)	147, 396, 685, 1117
AcuI	CTGAAG	3 cut(s)	152, 1242, 1359
AfaI	GTAC	3 cut(s)	84, 871, 1258
AfiI	CCNNNNNNNGG	4 cut(s)	722, 728, 793, 1246
AgsI	TTSAA	9 cut(s)	239, 293, 666, 758, 885, 892, 1122, 1138, 1319
AjnI	CCWGG	6 cut(s)	57, 225, 721, 770, 841, 1014
AjuI	GAANNNNNNNTTGG	2 cut(s)	676, 708
AloI	GAACNNNNNNTCC	2 cut(s)	602, 634
AluBI	AGCT	9 cut(s)	172, 202, 509, 560, 607, 761, 919, 964, 1276
AluI	AGCT	9 cut(s)	172, 202, 509, 560, 607, 761, 919, 964, 1276
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	1183, 1397
Aor13HI	TCCGGA	1 cut(s)	1386
AoxI	GGCC	4 cut(s)	519, 751, 1302, 1332
ApeKI	GCWGC	9 cut(s)	254, 257, 448, 557, 806, 815, 818, 1148, 1170
ApoI	RAATTY	4 cut(s)	147, 396, 685, 1117
Asp718I	GGTACC	1 cut(s)	1256
AspS9I	GGNCC	2 cut(s)	520, 874
AsuHPI	GGTGA	2 cut(s)	743, 1016
AvaII	GGWCC	1 cut(s)	874
BaeI	ACNNNNGTAYC	2 cut(s)	1248, 1281
BanI	GGYRCC	2 cut(s)	1094, 1256
BbvI	GCAGC	9 cut(s)	241, 244, 435, 569, 793, 802, 805, 1135, 1157
BccI	CCATC	4 cut(s)	587, 787, 994, 1001
BceAI	ACGGC	2 cut(s)	284, 536
BciT130I	CCWGG	6 cut(s)	59, 227, 723, 772, 843, 1016
BciVI	GTATCC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	2 cut(s)	561, 1244
BfmI	CTRYAG	2 cut(s)	258, 572
BfuAI	ACCTGC	2 cut(s)	304, 1019
BfuI	GTATCC	1 cut(s)	241
Bme1390I	CCNGG	6 cut(s)	59, 227, 723, 772, 843, 1016
Bme18I	GGWCC	1 cut(s)	874
BmgT120I	GGNCC	2 cut(s)	520, 874
BmiI	GGNNCC	3 cut(s)	769, 1096, 1258
BmrFI	CCNGG	6 cut(s)	59, 227, 723, 772, 843, 1016
BmsI	GCATC	3 cut(s)	198, 460, 1084
BpmI	CTGGAG	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	771
BsaWI	WCCGGW	1 cut(s)	1386
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	4 cut(s)	722, 728, 793, 1246
Bse1I	ACTGG	3 cut(s)	325, 769, 1029
Bse3DI	GCAATG	2 cut(s)	105, 269
BseAI	TCCGGA	1 cut(s)	1386
BseBI	CCWGG	6 cut(s)	59, 227, 723, 772, 843, 1016
BseDI	CCNNGG	1 cut(s)	771
BseGI	GGATG	1 cut(s)	1075
BseLI	CCNNNNNNNGG	4 cut(s)	722, 728, 793, 1246
BseMI	GCAATG	2 cut(s)	105, 269
BseMII	CTCAG	2 cut(s)	1103, 1314
BseNI	ACTGG	3 cut(s)	325, 769, 1029
BseRI	GAGGAG	2 cut(s)	393, 1340
BseXI	GCAGC	9 cut(s)	241, 244, 435, 569, 793, 802, 805, 1135, 1157
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	1 cut(s)	803
BshFI	GGCC	4 cut(s)	521, 753, 1304, 1334
BshNI	GGYRCC	2 cut(s)	1094, 1256
BsiSI	CCGG	1 cut(s)	1387
BslFI	GGGAC	2 cut(s)	591, 868
BslI	CCNNNNNNNGG	4 cut(s)	722, 728, 793, 1246
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	2 cut(s)	591, 868
BsnI	GGCC	4 cut(s)	521, 753, 1304, 1334
Bsp13I	TCCGGA	1 cut(s)	1386
Bsp143I	GATC	2 cut(s)	1188, 1389
BspACI	CCGC	4 cut(s)	716, 803, 1132, 1162
BspANI	GGCC	4 cut(s)	521, 753, 1304, 1334
BspCNI	CTCAG	2 cut(s)	1102, 1315
BspEI	TCCGGA	1 cut(s)	1386
BspFNI	CGCG	1 cut(s)	803
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	769, 1096, 1258
BspMAI	CTGCAG	2 cut(s)	262, 576
BspMI	ACCTGC	2 cut(s)	304, 1019
BspPI	GGATC	2 cut(s)	1183, 1397
BspT107I	GGYRCC	2 cut(s)	1094, 1256
BsrDI	GCAATG	2 cut(s)	105, 269
BsrI	ACTGG	3 cut(s)	325, 769, 1029
BssECI	CCNNGG	1 cut(s)	771
BssMI	GATC	2 cut(s)	1188, 1389
Bst2UI	CCWGG	6 cut(s)	59, 227, 723, 772, 843, 1016
Bst4CI	ACNGT	5 cut(s)	412, 439, 874, 1142, 1404
Bst6I	CTCTTC	1 cut(s)	1209
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstC8I	GCNNGC	5 cut(s)	12, 1175, 1332, 1355, 1359
BstDEI	CTNAG	5 cut(s)	198, 403, 1089, 1306, 1323
BstF5I	GGATG	1 cut(s)	1075
BstFNI	CGCG	1 cut(s)	803
BstKTI	GATC	2 cut(s)	1191, 1392
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	2 cut(s)	1188, 1389
BstNI	CCWGG	6 cut(s)	59, 227, 723, 772, 843, 1016
BstNSI	RCATGY	3 cut(s)	424, 748, 1361
BstSCI	CCNGG	6 cut(s)	57, 225, 721, 770, 841, 1014
BstSFI	CTRYAG	2 cut(s)	258, 572
BstUI	CGCG	1 cut(s)	803
BstV1I	GCAGC	9 cut(s)	241, 244, 435, 569, 793, 802, 805, 1135, 1157
BstX2I	RGATCY	1 cut(s)	1389
BstYI	RGATCY	1 cut(s)	1389
BsuI	GTATCC	1 cut(s)	241
BsuRI	GGCC	4 cut(s)	521, 753, 1304, 1334
BtsCI	GGATG	1 cut(s)	1075
BtsI	GCAGTG	2 cut(s)	45, 569
BtsIMutI	CAGTG	4 cut(s)	45, 444, 569, 1335
BveI	ACCTGC	2 cut(s)	304, 1019
Cac8I	GCNNGC	5 cut(s)	12, 1175, 1332, 1355, 1359
CciI	TCATGA	1 cut(s)	1105
Cfr13I	GGNCC	2 cut(s)	520, 874
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	3 cut(s)	83, 870, 1257
CviAII	CATG	7 cut(s)	143, 421, 470, 745, 1106, 1114, 1358
CviQI	GTAC	3 cut(s)	83, 870, 1257
DdeI	CTNAG	5 cut(s)	198, 403, 1089, 1306, 1323
DpnI	GATC	2 cut(s)	1190, 1391
DpnII	GATC	2 cut(s)	1188, 1389
Eam1104I	CTCTTC	1 cut(s)	1209
EarI	CTCTTC	1 cut(s)	1209
Eco147I	AGGCCT	1 cut(s)	1304
Eco47I	GGWCC	1 cut(s)	874
Eco57I	CTGAAG	3 cut(s)	152, 1242, 1359
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRI	GAATTC	2 cut(s)	396, 1117
EcoRII	CCWGG	6 cut(s)	57, 225, 721, 770, 841, 1014
FaeI	CATG	7 cut(s)	146, 424, 473, 748, 1109, 1117, 1361
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FaqI	GGGAC	2 cut(s)	591, 868
FatI	CATG	7 cut(s)	142, 420, 469, 744, 1105, 1113, 1357
FauI	CCCGC	1 cut(s)	723
FokI	GGATG	1 cut(s)	1062
FspBI	CTAG	2 cut(s)	561, 1244
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	4 cut(s)	521, 753, 1304, 1334
HapII	CCGG	1 cut(s)	1387
HgaI	GACGC	1 cut(s)	588
Hin1II	CATG	7 cut(s)	146, 424, 473, 748, 1109, 1117, 1361
HincII	GTYRAC	2 cut(s)	1063, 1267
HindII	GTYRAC	2 cut(s)	1063, 1267
HindIII	AAGCTT	3 cut(s)	200, 917, 962
HinfI	GANTC	4 cut(s)	189, 734, 783, 892
HpaI	GTTAAC	1 cut(s)	1063
HpaII	CCGG	1 cut(s)	1387
HphI	GGTGA	2 cut(s)	743, 1016
Hpy166II	GTNNAC	6 cut(s)	85, 415, 646, 870, 1063, 1267
Hpy188I	TCNGA	4 cut(s)	132, 154, 697, 972
Hpy188III	TCNNGA	7 cut(s)	341, 499, 738, 896, 997, 1106, 1387
Hpy8I	GTNNAC	6 cut(s)	85, 415, 646, 870, 1063, 1267
HpyAV	CCTTC	4 cut(s)	120, 303, 702, 764
HpyCH4III	ACNGT	5 cut(s)	412, 439, 874, 1142, 1404
HpyCH4IV	ACGT	2 cut(s)	81, 126
HpyF3I	CTNAG	5 cut(s)	198, 403, 1089, 1306, 1323
HpySE526I	ACGT	2 cut(s)	81, 126
Hsp92II	CATG	7 cut(s)	146, 424, 473, 748, 1109, 1117, 1361
Kpn2I	TCCGGA	1 cut(s)	1386
KpnI	GGTACC	1 cut(s)	1260
KspAI	GTTAAC	1 cut(s)	1063
Kzo9I	GATC	2 cut(s)	1188, 1389
LmnI	GCTCC	2 cut(s)	767, 1327
Lsp1109I	GCAGC	9 cut(s)	241, 244, 435, 569, 793, 802, 805, 1135, 1157
LweI	GCATC	3 cut(s)	198, 460, 1084
MaeI	CTAG	2 cut(s)	561, 1244
MaeII	ACGT	2 cut(s)	81, 126
MaeIII	GTNAC	4 cut(s)	406, 490, 1234, 1404
MalI	GATC	2 cut(s)	1190, 1391
MboI	GATC	2 cut(s)	1188, 1389
MboII	GAAGA	6 cut(s)	496, 923, 959, 1196, 1235, 1306
MflI	RGATCY	1 cut(s)	1389
MluCI	AATT	7 cut(s)	147, 275, 396, 685, 957, 1117, 1380
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	760
MroI	TCCGGA	1 cut(s)	1386
MseI	TTAA	3 cut(s)	924, 960, 1062
MspA1I	CMGCKG	2 cut(s)	509, 607
MspI	CCGG	1 cut(s)	1387
MspR9I	CCNGG	6 cut(s)	59, 227, 723, 772, 843, 1016
MvaI	CCWGG	6 cut(s)	59, 227, 723, 772, 843, 1016
MvnI	CGCG	1 cut(s)	803
NdeII	GATC	2 cut(s)	1188, 1389
NlaIII	CATG	7 cut(s)	146, 424, 473, 748, 1109, 1117, 1361
NlaIV	GGNNCC	3 cut(s)	769, 1096, 1258
NmuCI	GTSAC	2 cut(s)	490, 1234
NspI	RCATGY	3 cut(s)	424, 748, 1361
PaeI	GCATGC	1 cut(s)	1361
PagI	TCATGA	1 cut(s)	1105
PaqCI	CACCTGC	1 cut(s)	1019
PceI	AGGCCT	1 cut(s)	1304
PfeI	GAWTC	3 cut(s)	734, 783, 892
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	6 cut(s)	57, 225, 721, 770, 841, 1014
PspGI	CCWGG	6 cut(s)	57, 225, 721, 770, 841, 1014
PspN4I	GGNNCC	3 cut(s)	769, 1096, 1258
PspPI	GGNCC	2 cut(s)	520, 874
PstI	CTGCAG	2 cut(s)	262, 576
PsuI	RGATCY	1 cut(s)	1389
PvuII	CAGCTG	2 cut(s)	509, 607
RsaI	GTAC	3 cut(s)	84, 871, 1258
RsaNI	GTAC	3 cut(s)	83, 870, 1257
SaqAI	TTAA	3 cut(s)	924, 960, 1062
Sau3AI	GATC	2 cut(s)	1188, 1389
Sau96I	GGNCC	2 cut(s)	520, 874
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	6 cut(s)	59, 227, 723, 772, 843, 1016
SfaNI	GCATC	3 cut(s)	198, 460, 1084
SfcI	CTRYAG	2 cut(s)	258, 572
SinI	GGWCC	1 cut(s)	874
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
SphI	GCATGC	1 cut(s)	1361
Sse9I	AATT	7 cut(s)	147, 275, 396, 685, 957, 1117, 1380
SseBI	AGGCCT	1 cut(s)	1304
SsiI	CCGC	4 cut(s)	716, 803, 1132, 1162
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	2 cut(s)	561, 1244
StuI	AGGCCT	1 cut(s)	1304
StyD4I	CCNGG	6 cut(s)	57, 225, 721, 770, 841, 1014
TaaI	ACNGT	5 cut(s)	412, 439, 874, 1142, 1404
TaiI	ACGT	2 cut(s)	84, 129
TaqI	TCGA	1 cut(s)	25
TasI	AATT	7 cut(s)	147, 275, 396, 685, 957, 1117, 1380
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	3 cut(s)	734, 783, 892
Tru1I	TTAA	3 cut(s)	924, 960, 1062
Tru9I	TTAA	3 cut(s)	924, 960, 1062
TscAI	CASTG	4 cut(s)	45, 444, 576, 1342
TseFI	GTSAC	2 cut(s)	490, 1234
TseI	GCWGC	9 cut(s)	254, 257, 448, 557, 806, 815, 818, 1148, 1170
Tsp45I	GTSAC	2 cut(s)	490, 1234
TspDTI	ATGAA	5 cut(s)	159, 924, 1122, 1130, 1301
TspRI	CASTG	4 cut(s)	45, 444, 576, 1342
VpaK11BI	GGWCC	1 cut(s)	874
XapI	RAATTY	4 cut(s)	147, 396, 685, 1117
XceI	RCATGY	3 cut(s)	424, 748, 1361
XcmI	CCANNNNNNNNNTGG	2 cut(s)	506, 1004
XspI	CTAG	2 cut(s)	561, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.