Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Forward (+)

11605967 .. 11614219

Gene Structure 8253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGACAGAACCTTCCAAAGTCATTCACGTTCGGAATGTGGGGCATGAAATTTCTGAGAATGATTTGCTTCAGCTATTTCAGCCCTTCGGAGTCATAACTAAGCTTGTGATGCTACGCGCAAAAAACCAGGCTCTTATTCAAATGCAAGACACTGCTGCTGCAGTAAGTGCATTGCAATTCTATGCTAATGTTCAACCTGCTGTAAGGGGAAGGAATGTTTATGTCCAGTTCTCATCTCATCAAGAACTAACAACAATGTATCAAAATGCTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACGGTCCACCACATGCTATATCCTATAACAGTGGAAGTGCTGCATCAAGTTTTTTTCCCTCATGGATTTGTAGAGAAGATTGTCACTTTCCAGAAGTCAGCTGGTTTTCAGGCCCTCATCCAGTATCAGTCCCGCCAAAGTGCTGTTGCAGCTAGAACTGCACTACAGGGACGCAATATTTATGATGGTTGTTGTCAGCTGGACATCCAGTTCTCAAACCTTGACGAGTTGCAAGTGAACTACAATAATGAGCGTTCAAGGGATTTCACAAATCCAAATTTGCCTTCGGAACAGAAAGGAAGATCCCCACAACCTGGATATGGTGATGCGGGCGGCGGCATGTATGGCGTTCAAGCTACTGGAGCGAGGACAGTTGGATTCCCACAGATGGCTAACGCAGCTGCAATTGCTGCCGCCTTTGGTGGAGGTCTGCCTCCTGGAATAAGTGGGACAAATGACAGGTGTACGGTCCTCGTGTCAAATTTGAATCCCGATAGGATAGATGAAGATATGCTTTTTAACCTGTTCTCCATCTATGGAAACATTGTGAGAATTAAGCTTCTCCGGAACAAACCAGATCATGCACTTGTCCAGATGGGTGATGGCTTCCAGGCTGAACTGGCAGTACACTTTTTAAAGGGTGCAATCCTTTTTGGGAAGCGATTGGAGGTCAACTTCTCAAAGCATCCGAACATCACTCAGGGTGCCGACACTCATGAATACATGAATTCAAATCTCAACCGCTTCAACCGTAATGCTGCAAAGAACTACCGCTATTGCTGCTCACCTACAAAGATGATTCACTTGTCATCTCTTCCACAGGAAGTTGCTGAAGATGAGATTGTGACCCACCTAGAGGAAATTGGTACCATTGTCAACACAAAGCTCTTTGAGATGAATGGGAAGAAGCAGGCCTTGGTTCTGTTTGAAACTGAGGAGCAGGCCACCGAAGCCCTGGTGTGCAAGCATGCTACCTCGCTTGGTGGGTCAATAATCAGGATCTCCTTTTCACAGTTACAAGCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

446

Amino Acids

49.35

Weight (kDa)

6.92

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_8	PF11835	96 - 175	2.2e-21	RRM-like domain
RRM_5	PF13893	241 - 343	1.6e-32	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	260 - 325	2.4e-06	RNA recognition motif
RRM_1	PF00076	373 - 435	3e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
Acc65I	GGTACC	1 cut(s)	1175
AccB1I	GGYRCC	2 cut(s)	1013, 1175
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	873
AciI	CCGC	7 cut(s)	442, 638, 642, 645, 723, 1051, 1081
AclWI	GGATC	2 cut(s)	606, 1316
AcsI	RAATTY	5 cut(s)	48, 297, 586, 790, 1036
AcuI	CTGAAG	2 cut(s)	53, 1161
AfaI	GTAC	3 cut(s)	775, 936, 1177
AfiI	CCNNNNNNNGG	4 cut(s)	623, 629, 697, 1165
AgsI	TTSAA	8 cut(s)	140, 194, 567, 662, 796, 1041, 1057, 1238
AjnI	CCWGG	5 cut(s)	126, 622, 745, 918, 1263
AjuI	GAANNNNNNNTTGG	4 cut(s)	577, 609, 1208, 1240
AloI	GAACNNNNNNTCC	2 cut(s)	503, 535
AluBI	AGCT	9 cut(s)	73, 103, 410, 461, 508, 665, 710, 868, 1195
AluI	AGCT	9 cut(s)	73, 103, 410, 461, 508, 665, 710, 868, 1195
AlwI	GGATC	2 cut(s)	606, 1316
Aor13HI	TCCGGA	1 cut(s)	873
AoxI	GGCC	3 cut(s)	420, 1221, 1251
ApeKI	GCWGC	9 cut(s)	155, 158, 349, 458, 707, 710, 719, 1067, 1089
ApoI	RAATTY	5 cut(s)	48, 297, 586, 790, 1036
Asp718I	GGTACC	1 cut(s)	1175
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	313, 421, 778
AsuHPI	GGTGA	3 cut(s)	644, 920, 1086
AvaII	GGWCC	2 cut(s)	313, 778
BaeI	ACNNNNGTAYC	2 cut(s)	1167, 1200
BanI	GGYRCC	2 cut(s)	1013, 1175
BauI	CACGAG	1 cut(s)	782
BbvI	GCAGC	9 cut(s)	142, 145, 336, 470, 697, 706, 719, 1054, 1076
BccI	CCATC	5 cut(s)	488, 691, 848, 898, 905
BciT130I	CCWGG	5 cut(s)	128, 624, 747, 920, 1265
BfaI	CTAG	2 cut(s)	462, 1163
BfmI	CTRYAG	2 cut(s)	159, 473
BfuAI	ACCTGC	1 cut(s)	205
Bme1390I	CCNGG	5 cut(s)	128, 624, 747, 920, 1265
Bme18I	GGWCC	2 cut(s)	313, 778
BmgT120I	GGNCC	3 cut(s)	313, 421, 778
BmiI	GGNNCC	2 cut(s)	1015, 1177
BmrFI	CCNGG	5 cut(s)	128, 624, 747, 920, 1265
BmsI	GCATC	4 cut(s)	99, 361, 625, 1003
BpmI	CTGGAG	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	1224, 1263
BsaWI	WCCGGW	1 cut(s)	873
BsaXI	ACNNNNNCTCC	2 cut(s)	821, 851
Bsc4I	CCNNNNNNNGG	4 cut(s)	623, 629, 697, 1165
Bse1I	ACTGG	5 cut(s)	226, 430, 517, 673, 933
Bse3DI	GCAATG	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	873
BseBI	CCWGG	5 cut(s)	128, 624, 747, 920, 1265
BseDI	CCNNGG	2 cut(s)	1224, 1263
BseGI	GGATG	3 cut(s)	426, 513, 994
BseLI	CCNNNNNNNGG	4 cut(s)	623, 629, 697, 1165
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	3 cut(s)	45, 1022, 1233
BseNI	ACTGG	5 cut(s)	226, 430, 517, 673, 933
BseRI	GAGGAG	2 cut(s)	294, 1259
BseXI	GCAGC	9 cut(s)	142, 145, 336, 470, 697, 706, 719, 1054, 1076
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	422, 1223, 1253
BshNI	GGYRCC	2 cut(s)	1013, 1175
BsiSI	CCGG	1 cut(s)	874
BslFI	GGGAC	3 cut(s)	424, 492, 772
BslI	CCNNNNNNNGG	4 cut(s)	623, 629, 697, 1165
BsmFI	GGGAC	3 cut(s)	424, 492, 772
BsnI	GGCC	3 cut(s)	422, 1223, 1253
Bsp13I	TCCGGA	1 cut(s)	873
Bsp143I	GATC	3 cut(s)	611, 886, 1308
BspACI	CCGC	7 cut(s)	442, 638, 642, 645, 723, 1051, 1081
BspANI	GGCC	3 cut(s)	422, 1223, 1253
BspCNI	CTCAG	3 cut(s)	46, 1021, 1234
BspEI	TCCGGA	1 cut(s)	873
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	1024
BspLI	GGNNCC	2 cut(s)	1015, 1177
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	205
BspPI	GGATC	2 cut(s)	606, 1316
BspT107I	GGYRCC	2 cut(s)	1013, 1175
BsrDI	GCAATG	1 cut(s)	170
BsrI	ACTGG	5 cut(s)	226, 430, 517, 673, 933
BssECI	CCNNGG	2 cut(s)	1224, 1263
BssMI	GATC	3 cut(s)	611, 886, 1308
BssSI	CACGAG	1 cut(s)	782
BssT1I	CCWWGG	1 cut(s)	1224
Bst2BI	CACGAG	1 cut(s)	782
Bst2UI	CCWGG	5 cut(s)	128, 624, 747, 920, 1265
Bst4CI	ACNGT	6 cut(s)	313, 340, 682, 778, 1061, 1323
Bst6I	CTCTTC	1 cut(s)	1128
BstAPI	GCANNNNNTGC	2 cut(s)	167, 719
BstC8I	GCNNGC	5 cut(s)	640, 1221, 1251, 1274, 1278
BstDEI	CTNAG	5 cut(s)	54, 99, 304, 1008, 1242
BstF5I	GGATG	3 cut(s)	426, 513, 994
BstFNI	CGCG	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	3 cut(s)	614, 889, 1311
BstMBI	GATC	3 cut(s)	611, 886, 1308
BstNI	CCWGG	5 cut(s)	128, 624, 747, 920, 1265
BstNSI	RCATGY	3 cut(s)	325, 652, 1280
BstSCI	CCNGG	5 cut(s)	126, 622, 745, 918, 1263
BstSFI	CTRYAG	2 cut(s)	159, 473
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	9 cut(s)	142, 145, 336, 470, 697, 706, 719, 1054, 1076
BstX2I	RGATCY	2 cut(s)	611, 1308
BstYI	RGATCY	2 cut(s)	611, 1308
BsuRI	GGCC	3 cut(s)	422, 1223, 1253
BtsCI	GGATG	3 cut(s)	426, 513, 994
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 345
BveI	ACCTGC	1 cut(s)	205
Cac8I	GCNNGC	5 cut(s)	640, 1221, 1251, 1274, 1278
CciI	TCATGA	1 cut(s)	1024
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	313, 421, 778
CseI	GACGC	1 cut(s)	489
Csp6I	GTAC	3 cut(s)	774, 935, 1176
CviAII	CATG	8 cut(s)	44, 322, 371, 649, 890, 1025, 1033, 1277
CviQI	GTAC	3 cut(s)	774, 935, 1176
DdeI	CTNAG	5 cut(s)	54, 99, 304, 1008, 1242
DpnI	GATC	3 cut(s)	613, 888, 1310
DpnII	GATC	3 cut(s)	611, 886, 1308
DraI	TTTAAA	1 cut(s)	945
Eam1104I	CTCTTC	1 cut(s)	1128
EarI	CTCTTC	1 cut(s)	1128
Eco130I	CCWWGG	1 cut(s)	1224
Eco147I	AGGCCT	1 cut(s)	1223
Eco47I	GGWCC	2 cut(s)	313, 778
Eco57I	CTGAAG	2 cut(s)	53, 1161
EcoO109I	RGGNCCY	1 cut(s)	421
EcoRI	GAATTC	2 cut(s)	297, 1036
EcoRII	CCWGG	5 cut(s)	126, 622, 745, 918, 1263
EcoT14I	CCWWGG	1 cut(s)	1224
ErhI	CCWWGG	1 cut(s)	1224
FaeI	CATG	8 cut(s)	47, 325, 374, 652, 893, 1028, 1036, 1280
FalI	AAGNNNNNCTT	4 cut(s)	807, 839, 1208, 1240
FaqI	GGGAC	3 cut(s)	424, 492, 772
FatI	CATG	8 cut(s)	43, 321, 370, 648, 889, 1024, 1032, 1276
FauI	CCCGC	2 cut(s)	449, 631
FokI	GGATG	3 cut(s)	413, 500, 981
FspBI	CTAG	2 cut(s)	462, 1163
GlaI	GCGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	422, 1223, 1253
HapII	CCGG	1 cut(s)	874
HgaI	GACGC	1 cut(s)	489
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	8 cut(s)	47, 325, 374, 652, 893, 1028, 1036, 1280
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	2 cut(s)	982, 1186
HindII	GTYRAC	2 cut(s)	982, 1186
HindIII	AAGCTT	2 cut(s)	101, 866
HinfI	GANTC	4 cut(s)	90, 687, 796, 1108
HpaII	CCGG	1 cut(s)	874
HphI	GGTGA	3 cut(s)	644, 920, 1086
Hpy166II	GTNNAC	6 cut(s)	316, 547, 774, 937, 982, 1186
Hpy188I	TCNGA	5 cut(s)	33, 55, 89, 598, 999
Hpy188III	TCNNGA	7 cut(s)	242, 400, 800, 874, 901, 1025, 1306
Hpy8I	GTNNAC	6 cut(s)	316, 547, 774, 937, 982, 1186
HpyAV	CCTTC	4 cut(s)	21, 94, 204, 603
HpyCH4III	ACNGT	6 cut(s)	313, 340, 682, 778, 1061, 1323
HpyCH4IV	ACGT	1 cut(s)	27
HpyF3I	CTNAG	5 cut(s)	54, 99, 304, 1008, 1242
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	8 cut(s)	47, 325, 374, 652, 893, 1028, 1036, 1280
HspAI	GCGC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	873
KpnI	GGTACC	1 cut(s)	1179
Kzo9I	GATC	3 cut(s)	611, 886, 1308
LmnI	GCTCC	2 cut(s)	671, 1246
Lsp1109I	GCAGC	9 cut(s)	142, 145, 336, 470, 697, 706, 719, 1054, 1076
LweI	GCATC	4 cut(s)	99, 361, 625, 1003
MaeI	CTAG	2 cut(s)	462, 1163
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	4 cut(s)	307, 391, 1153, 1323
MalI	GATC	3 cut(s)	613, 888, 1310
MboI	GATC	3 cut(s)	611, 886, 1308
MboII	GAAGA	6 cut(s)	397, 621, 827, 1115, 1154, 1225
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	2 cut(s)	611, 1308
MluCI	AATT	9 cut(s)	48, 176, 297, 586, 714, 790, 861, 1036, 1170
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	664
MroI	TCCGGA	1 cut(s)	873
MseI	TTAA	3 cut(s)	828, 864, 944
MspA1I	CMGCKG	3 cut(s)	410, 508, 710
MspI	CCGG	1 cut(s)	874
MspR9I	CCNGG	5 cut(s)	128, 624, 747, 920, 1265
MunI	CAATTG	1 cut(s)	714
MvaI	CCWGG	5 cut(s)	128, 624, 747, 920, 1265
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	3 cut(s)	611, 886, 1308
NlaIII	CATG	8 cut(s)	47, 325, 374, 652, 893, 1028, 1036, 1280
NlaIV	GGNNCC	2 cut(s)	1015, 1177
NmuCI	GTSAC	2 cut(s)	391, 1153
NspI	RCATGY	3 cut(s)	325, 652, 1280
PaeI	GCATGC	1 cut(s)	1280
PagI	TCATGA	1 cut(s)	1024
PceI	AGGCCT	1 cut(s)	1223
PfeI	GAWTC	3 cut(s)	687, 796, 1108
PflMI	CCANNNNNTGG	1 cut(s)	623
PfoI	TCCNGGA	1 cut(s)	745
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp6I	CCWGG	5 cut(s)	126, 622, 745, 918, 1263
PspGI	CCWGG	5 cut(s)	126, 622, 745, 918, 1263
PspN4I	GGNNCC	2 cut(s)	1015, 1177
PspPI	GGNCC	3 cut(s)	313, 421, 778
PsrI	GAACNNNNNNTAC	2 cut(s)	918, 950
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	611, 1308
PvuII	CAGCTG	3 cut(s)	410, 508, 710
RsaI	GTAC	3 cut(s)	775, 936, 1177
RsaNI	GTAC	3 cut(s)	774, 935, 1176
SaqAI	TTAA	3 cut(s)	828, 864, 944
Sau3AI	GATC	3 cut(s)	611, 886, 1308
Sau96I	GGNCC	3 cut(s)	313, 421, 778
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	5 cut(s)	128, 624, 747, 920, 1265
SfaNI	GCATC	4 cut(s)	99, 361, 625, 1003
SfcI	CTRYAG	2 cut(s)	159, 473
SinI	GGWCC	2 cut(s)	313, 778
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	1280
Sse9I	AATT	9 cut(s)	48, 176, 297, 586, 714, 790, 861, 1036, 1170
SseBI	AGGCCT	1 cut(s)	1223
SsiI	CCGC	7 cut(s)	442, 638, 642, 645, 723, 1051, 1081
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	462, 1163
StuI	AGGCCT	1 cut(s)	1223
StyD4I	CCNGG	5 cut(s)	126, 622, 745, 918, 1263
StyI	CCWWGG	1 cut(s)	1224
TaaI	ACNGT	6 cut(s)	313, 340, 682, 778, 1061, 1323
TaiI	ACGT	1 cut(s)	30
TasI	AATT	9 cut(s)	48, 176, 297, 586, 714, 790, 861, 1036, 1170
TatI	WGTACW	1 cut(s)	934
TauI	GCSGC	3 cut(s)	645, 648, 725
TfiI	GAWTC	3 cut(s)	687, 796, 1108
Tru1I	TTAA	3 cut(s)	828, 864, 944
Tru9I	TTAA	3 cut(s)	828, 864, 944
TscAI	CASTG	2 cut(s)	157, 345
TseFI	GTSAC	2 cut(s)	391, 1153
TseI	GCWGC	9 cut(s)	155, 158, 349, 458, 707, 710, 719, 1067, 1089
Tsp45I	GTSAC	2 cut(s)	391, 1153
TspDTI	ATGAA	5 cut(s)	60, 828, 1041, 1049, 1220
TspRI	CASTG	2 cut(s)	157, 345
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	2 cut(s)	313, 778
XapI	RAATTY	5 cut(s)	48, 297, 586, 790, 1036
XceI	RCATGY	3 cut(s)	325, 652, 1280
XcmI	CCANNNNNNNNNTGG	3 cut(s)	407, 908, 1261
XspI	CTAG	2 cut(s)	462, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.