Prupe.8G036700_v2.0.a1

Polypyrimidine tract-binding protein homolog

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
3351573 .. 3362291
10719 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G036700.2

Sequence Viewer

Length: 1479 bp
ATGTTTGTACCTTGCTGTGCGCATTGGAATCTAATCGTCTGTACATCGCAAATTACATGTCAAGCACTCGATCCCTGCAGTACTGACTTGAGCTCTACCCCTTCACTCCTTCTTCGATCCCTCTCTCTCTCAGGGTTTTCCACGATGACAGAACCCTCTAAAGTCATTCACGTCCGAAATGTGGGGCATGAAATTTCTGAAAATGATTTGCTCCAGCTATTTCAGCCATTTGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTTATCCAAATGCAAGATACTCCTGCTGCAGTAAGTGCACTGCAATTCTATGGAAATGTTCAACCTGCCATAAGGGGAAGGAATGTCTATGTCCAGTTCTCATCACATCAAGAATTGACAACAATGTATCAGAATGCTCAAGGACGAGGAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACATGCTATATCCTATAACAGTGGAAGTTCTGCATCAAGTGTTTTTTCCTCATGGATTTGTAGAGAAGATCGTCACTTTTCAGAAGTCAGCTGGTTTTCAGGCCCTAATCCAGTATCAGTCACGCCAGAGTGCCGTTGCAGCTAGAACTGCGCTGCAGGGACGCAATATTTATGATGGTTGCTGTCAACTGGACATTCAGTTCTCAAACCTTGACGAGTTACAAGTGAACTACAATAATGAGCGTTCAAGAGATTTCACAAACCCCAATTTGCCTTCAGAACAGAAAGGAAGATCCCCGCAGCCTGGGTATGGTGATGCAGGAGGCGTGTATGGCCTTCAAGGTACTGGAGCCAGGGCAGTTGGATTTCCGCAGATGGCTAATGCGGCTGCAATTGCGGCCGCCTTTGGTGGAGGTTTACCTCCTGGTATAAGTGGGACAAATGACAGGTGTACAGTCCTTGTCTCAAATCTCAATCCTGATAAAATAGACGAGGATAAGCTTTTTAACTTGTTTTCCATATATGGAAACATTGTGAGAATTAAACTTCTTCGAAACAAACCAGACCATGCACTTGTCCAGATGGGTGATGGCTTCCAGTCCGAACTGGCAGTACACTTTCTAAAGGGTGCAATCCTGTTTGGGAAGCGATTGGAGGTCAACTTCTCAAAGCATCCGAACATAACCCAAGGTGCCGACACACATGAATACATGAACTCAAATCTCAACCGCTTCAATCGTAATGCAGCAAAGAACTACCGCTATTGCTGTTCGCCAACAAAGATGATCCACTTGTCTTCTCTTCCCCAGGAAGTCACTGAAGAGGAGATTGTGAACCACCTAGAGGAAATTGGTACCATTGTAAACACGAAGCTCTTTGAGATGAACGGAAAGAAGCAGGCGTTGGTTCTGTTTGAAACTGAGGAGCAGGCCACTGAAGCTCTTGTGTGCAAGCATGCTACCTCGCTCGGTGGGTCAATAATCCGAATCTCCTTTTCACAGCTACAGGGAATATAA

Protein Analysis

493

Amino Acids

54.43

Weight (kDa)

6.94

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
Acc36I ACCTGC 1 cut(s) 349
Acc65I GGTACC 1 cut(s) 1316
AccB1I GGYRCC 2 cut(s) 1154, 1316
AciI CCGC 7 cut(s) 761, 833, 848, 860, 864, 1192, 1222
AclWI GGATC 4 cut(s) 65, 111, 750, 1243
AcoI YGGCCR 1 cut(s) 861
AcsI RAATTY 2 cut(s) 192, 441
AcuI CTGAAG 3 cut(s) 723, 1302, 1419
AfaI GTAC 7 cut(s) 9, 43, 82, 808, 916, 1077, 1318
AfiI CCNNNNNNNGG 4 cut(s) 181, 767, 773, 1306
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 5 cut(s) 338, 711, 803, 1198, 1379
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 4 cut(s) 766, 815, 886, 1269
AjuI GAANNNNNNNTTGG 2 cut(s) 1349, 1381
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 9 cut(s) 93, 217, 247, 554, 605, 964, 1336, 1403, 1465
AluI AGCT 9 cut(s) 93, 217, 247, 554, 605, 964, 1336, 1403, 1465
Alw21I GWGCWC 2 cut(s) 95, 316
Alw26I GTCTC 1 cut(s) 931
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 4 cut(s) 65, 111, 750, 1243
AoxI GGCC 4 cut(s) 564, 796, 861, 1392
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 6 cut(s) 302, 602, 616, 763, 851, 1208
ApoI RAATTY 2 cut(s) 192, 441
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
Asp718I GGTACC 1 cut(s) 1316
AspLEI GCGC 2 cut(s) 22, 616
AspS9I GGNCC 1 cut(s) 565
AsuHPI GGTGA 2 cut(s) 788, 1061
AsuII TTCGAA 1 cut(s) 1015
BaeGI GKGCMC 1 cut(s) 316
BaeI ACNNNNGTAYC 2 cut(s) 1308, 1341
BanI GGYRCC 2 cut(s) 1154, 1316
BanII GRGCYC 1 cut(s) 95
BbsI GAAGAC 1 cut(s) 1251
Bbv12I GWGCWC 2 cut(s) 95, 316
BbvI GCAGC 6 cut(s) 289, 603, 614, 775, 838, 1220
BccI CCATC 4 cut(s) 632, 832, 1039, 1046
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 4 cut(s) 768, 817, 888, 1271
BcoDI GTCTC 1 cut(s) 931
BfaI CTAG 2 cut(s) 606, 1304
BfmI CTRYAG 4 cut(s) 76, 303, 617, 1466
BfuAI ACCTGC 1 cut(s) 349
BisI GCNGC 9 cut(s) 303, 603, 617, 764, 849, 852, 861, 864, 1209
BlsI GCNGC 9 cut(s) 304, 604, 618, 765, 850, 853, 862, 865, 1210
BmcAI AGTACT 1 cut(s) 82
Bme1390I CCNGG 4 cut(s) 768, 817, 888, 1271
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 565
BmiI GGNNCC 3 cut(s) 814, 1156, 1318
BmrFI CCNGG 4 cut(s) 768, 817, 888, 1271
BmsI GCATC 4 cut(s) 243, 505, 769, 1144
BpiI GAAGAC 1 cut(s) 1251
BpmI CTGGAG 2 cut(s) 197, 831
Bpu14I TTCGAA 1 cut(s) 1015
BpuEI CTTGAG 2 cut(s) 109, 399
BsaJI CCNNGG 4 cut(s) 767, 816, 1150, 1269
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 767, 773, 1306
Bse1I ACTGG 6 cut(s) 370, 574, 657, 814, 1060, 1074
BseBI CCWGG 4 cut(s) 768, 817, 888, 1271
BseDI CCNNGG 4 cut(s) 767, 816, 1150, 1269
BseGI GGATG 1 cut(s) 1135
BseLI CCNNNNNNNGG 4 cut(s) 181, 767, 773, 1306
BseMII CTCAG 2 cut(s) 144, 1374
BseNI ACTGG 6 cut(s) 370, 574, 657, 814, 1060, 1074
BseRI GAGGAG 3 cut(s) 438, 1301, 1400
BseSI GKGCMC 1 cut(s) 316
BseX3I CGGCCG 1 cut(s) 861
BseXI GCAGC 6 cut(s) 289, 603, 614, 775, 838, 1220
Bsh1285I CGRYCG 1 cut(s) 864
BshFI GGCC 4 cut(s) 566, 798, 863, 1394
BshNI GGYRCC 2 cut(s) 1154, 1316
BsiEI CGRYCG 1 cut(s) 864
BsiHKAI GWGCWC 2 cut(s) 95, 316
BslFI GGGAC 2 cut(s) 636, 913
BslI CCNNNNNNNGG 4 cut(s) 181, 767, 773, 1306
BsmAI GTCTC 1 cut(s) 931
BsmFI GGGAC 2 cut(s) 636, 913
BsmI GAATGC 1 cut(s) 415
BsnI GGCC 4 cut(s) 566, 798, 863, 1394
Bsp119I TTCGAA 1 cut(s) 1015
Bsp1286I GDGCHC 2 cut(s) 95, 316
Bsp1407I TGTACA 2 cut(s) 41, 914
Bsp143I GATC 5 cut(s) 70, 116, 531, 755, 1248
BspACI CCGC 7 cut(s) 761, 833, 848, 860, 864, 1192, 1222
BspANI GGCC 4 cut(s) 566, 798, 863, 1394
BspCNI CTCAG 2 cut(s) 143, 1375
BspLI GGNNCC 3 cut(s) 814, 1156, 1318
BspMAI CTGCAG 3 cut(s) 80, 307, 621
BspMI ACCTGC 1 cut(s) 349
BspPI GGATC 4 cut(s) 65, 111, 750, 1243
BspT104I TTCGAA 1 cut(s) 1015
BspT107I GGYRCC 2 cut(s) 1154, 1316
BsrGI TGTACA 2 cut(s) 41, 914
BsrI ACTGG 6 cut(s) 370, 574, 657, 814, 1060, 1074
BssECI CCNNGG 4 cut(s) 767, 816, 1150, 1269
BssMI GATC 5 cut(s) 70, 116, 531, 755, 1248
BssT1I CCWWGG 1 cut(s) 1150
Bst2UI CCWGG 4 cut(s) 768, 817, 888, 1271
Bst4CI ACNGT 2 cut(s) 484, 919
Bst6I CTCTTC 2 cut(s) 1269, 1278
BstAPI GCANNNNNTGC 1 cut(s) 311
BstAUI TGTACA 2 cut(s) 41, 914
BstBI TTCGAA 1 cut(s) 1015
BstC8I GCNNGC 4 cut(s) 1362, 1392, 1415, 1419
BstDEI CTNAG 4 cut(s) 130, 243, 448, 1383
BstF5I GGATG 1 cut(s) 1135
BstHHI GCGC 2 cut(s) 22, 616
BstKTI GATC 5 cut(s) 73, 119, 534, 758, 1251
BstMAI GTCTC 1 cut(s) 931
BstMBI GATC 5 cut(s) 70, 116, 531, 755, 1248
BstMCI CGRYCG 1 cut(s) 864
BstNI CCWGG 4 cut(s) 768, 817, 888, 1271
BstNSI RCATGY 3 cut(s) 60, 469, 1421
BstSCI CCNGG 4 cut(s) 766, 815, 886, 1269
BstSFI CTRYAG 4 cut(s) 76, 303, 617, 1466
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 6 cut(s) 289, 603, 614, 775, 838, 1220
BstV2I GAAGAC 1 cut(s) 1251
BstX2I RGATCY 1 cut(s) 755
BstYI RGATCY 1 cut(s) 755
BstZI CGGCCG 1 cut(s) 861
BsuRI GGCC 4 cut(s) 566, 798, 863, 1394
BtgZI GCGATG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 1135
BtsI GCAGTG 1 cut(s) 314
BtsIMutI CAGTG 4 cut(s) 314, 489, 1278, 1395
BveI ACCTGC 1 cut(s) 349
Cac8I GCNNGC 4 cut(s) 1362, 1392, 1415, 1419
CciNI GCGGCCGC 1 cut(s) 861
CfoI GCGC 2 cut(s) 22, 616
Cfr13I GGNCC 1 cut(s) 565
CseI GACGC 1 cut(s) 633
Csp6I GTAC 7 cut(s) 8, 42, 81, 807, 915, 1076, 1317
CviAII CATG 8 cut(s) 57, 188, 466, 515, 1031, 1166, 1174, 1418
CviQI GTAC 7 cut(s) 8, 42, 81, 807, 915, 1076, 1317
DdeI CTNAG 4 cut(s) 130, 243, 448, 1383
DpnI GATC 5 cut(s) 72, 118, 533, 757, 1250
DpnII GATC 5 cut(s) 70, 116, 531, 755, 1248
EaeI YGGCCR 1 cut(s) 861
EagI CGGCCG 1 cut(s) 861
Eam1104I CTCTTC 2 cut(s) 1269, 1278
EarI CTCTTC 2 cut(s) 1269, 1278
Ecl136II GAGCTC 1 cut(s) 93
EclXI CGGCCG 1 cut(s) 861
Eco130I CCWWGG 1 cut(s) 1150
Eco24I GRGCYC 1 cut(s) 95
Eco52I CGGCCG 1 cut(s) 861
Eco53kI GAGCTC 1 cut(s) 93
Eco57I CTGAAG 3 cut(s) 723, 1302, 1419
EcoICRI GAGCTC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 441
EcoRII CCWGG 4 cut(s) 766, 815, 886, 1269
EcoT14I CCWWGG 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 1 cut(s) 1150
FaeI CATG 8 cut(s) 60, 191, 469, 518, 1034, 1169, 1177, 1421
FaqI GGGAC 2 cut(s) 636, 913
FatI CATG 8 cut(s) 56, 187, 465, 514, 1030, 1165, 1173, 1417
FauI CCCGC 1 cut(s) 768
Fnu4HI GCNGC 9 cut(s) 303, 603, 617, 764, 849, 852, 861, 864, 1209
FokI GGATG 1 cut(s) 1122
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 9 cut(s) 303, 603, 617, 764, 849, 852, 861, 864, 1209
FspAI RTGCGCAY 1 cut(s) 21
FspBI CTAG 2 cut(s) 606, 1304
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 2 cut(s) 21, 615
GluI GCNGC 9 cut(s) 303, 603, 617, 764, 849, 852, 861, 864, 1209
GsuI CTGGAG 2 cut(s) 197, 831
HaeIII GGCC 4 cut(s) 566, 798, 863, 1394
HgaI GACGC 1 cut(s) 633
HhaI GCGC 2 cut(s) 22, 616
Hin1II CATG 8 cut(s) 60, 191, 469, 518, 1034, 1169, 1177, 1421
Hin6I GCGC 2 cut(s) 20, 614
HinP1I GCGC 2 cut(s) 20, 614
HincII GTYRAC 2 cut(s) 650, 1123
HindII GTYRAC 2 cut(s) 650, 1123
HindIII AAGCTT 2 cut(s) 245, 962
HinfI GANTC 3 cut(s) 28, 234, 1449
HphI GGTGA 2 cut(s) 788, 1061
Hpy166II GTNNAC 9 cut(s) 314, 650, 691, 881, 915, 1078, 1123, 1297, 1327
Hpy188I TCNGA 8 cut(s) 176, 199, 408, 546, 742, 1066, 1140, 1448
Hpy188III TCNNGA 4 cut(s) 386, 711, 941, 1042
Hpy8I GTNNAC 9 cut(s) 314, 650, 691, 881, 915, 1078, 1123, 1297, 1327
HpyAV CCTTC 5 cut(s) 111, 119, 348, 747, 809
HpyCH4III ACNGT 2 cut(s) 484, 919
HpyCH4IV ACGT 1 cut(s) 171
HpyF3I CTNAG 4 cut(s) 130, 243, 448, 1383
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 8 cut(s) 60, 191, 469, 518, 1034, 1169, 1177, 1421
HspAI GCGC 2 cut(s) 20, 614
KpnI GGTACC 1 cut(s) 1320
Kzo9I GATC 5 cut(s) 70, 116, 531, 755, 1248
LmnI GCTCC 3 cut(s) 216, 812, 1387
Lsp1109I GCAGC 6 cut(s) 289, 603, 614, 775, 838, 1220
LweI GCATC 4 cut(s) 243, 505, 769, 1144
MaeI CTAG 2 cut(s) 606, 1304
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 5 cut(s) 451, 535, 582, 681, 1276
MalI GATC 5 cut(s) 72, 118, 533, 757, 1250
MboI GATC 5 cut(s) 70, 116, 531, 755, 1248
MboII GAAGA 7 cut(s) 104, 541, 765, 1004, 1251, 1256, 1295
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 2 cut(s) 95, 316
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 805
MseI TTAA 2 cut(s) 969, 1005
MspA1I CMGCKG 1 cut(s) 554
MspR9I CCNGG 4 cut(s) 768, 817, 888, 1271
MunI CAATTG 1 cut(s) 855
Mva1269I GAATGC 1 cut(s) 415
MvaI CCWGG 4 cut(s) 768, 817, 888, 1271
NdeII GATC 5 cut(s) 70, 116, 531, 755, 1248
NlaIII CATG 8 cut(s) 60, 191, 469, 518, 1034, 1169, 1177, 1421
NlaIV GGNNCC 3 cut(s) 814, 1156, 1318
NmuCI GTSAC 3 cut(s) 535, 582, 1276
NotI GCGGCCGC 1 cut(s) 861
NsbI TGCGCA 1 cut(s) 21
NspI RCATGY 3 cut(s) 60, 469, 1421
NspV TTCGAA 1 cut(s) 1015
PaeI GCATGC 1 cut(s) 1421
PciI ACATGT 1 cut(s) 56
PctI GAATGC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 28, 1449
PkrI GCNGC 9 cut(s) 304, 604, 618, 765, 850, 853, 862, 865, 1210
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PscI ACATGT 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 4 cut(s) 766, 815, 886, 1269
PspGI CCWGG 4 cut(s) 766, 815, 886, 1269
PspN4I GGNNCC 3 cut(s) 814, 1156, 1318
PspPI GGNCC 1 cut(s) 565
PsrI GAACNNNNNNTAC 2 cut(s) 1059, 1091
PstI CTGCAG 3 cut(s) 80, 307, 621
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 7 cut(s) 9, 43, 82, 808, 916, 1077, 1318
RsaNI GTAC 7 cut(s) 8, 42, 81, 807, 915, 1076, 1317
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 969, 1005
SatI GCNGC 9 cut(s) 303, 603, 617, 764, 849, 852, 861, 864, 1209
Sau3AI GATC 5 cut(s) 70, 116, 531, 755, 1248
Sau96I GGNCC 1 cut(s) 565
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 4 cut(s) 768, 817, 888, 1271
SduI GDGCHC 2 cut(s) 95, 316
SfaNI GCATC 4 cut(s) 243, 505, 769, 1144
SfcI CTRYAG 4 cut(s) 76, 303, 617, 1466
SfuI TTCGAA 1 cut(s) 1015
SmlI CTYRAG 2 cut(s) 88, 414
SmoI CTYRAG 2 cut(s) 88, 414
SphI GCATGC 1 cut(s) 1421
SsiI CCGC 7 cut(s) 761, 833, 848, 860, 864, 1192, 1222
SspI AATATT 1 cut(s) 631
SspMI CTAG 2 cut(s) 606, 1304
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 4 cut(s) 766, 815, 886, 1269
StyI CCWWGG 1 cut(s) 1150
TaaI ACNGT 2 cut(s) 484, 919
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 69, 115, 1015
TatI WGTACW 4 cut(s) 41, 80, 914, 1075
TauI GCSGC 3 cut(s) 851, 863, 866
TfiI GAWTC 2 cut(s) 28, 1449
Tru1I TTAA 2 cut(s) 969, 1005
Tru9I TTAA 2 cut(s) 969, 1005
TscAI CASTG 4 cut(s) 321, 489, 1285, 1402
TseFI GTSAC 3 cut(s) 535, 582, 1276
TseI GCWGC 6 cut(s) 302, 602, 616, 763, 851, 1208
Tsp45I GTSAC 3 cut(s) 535, 582, 1276
TspDTI ATGAA 5 cut(s) 204, 449, 1182, 1190, 1361
TspGWI ACGGA 1 cut(s) 1365
TspRI CASTG 4 cut(s) 321, 489, 1285, 1402
VneI GTGCAC 1 cut(s) 312
XapI RAATTY 2 cut(s) 192, 441
XceI RCATGY 3 cut(s) 60, 469, 1421
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XspI CTAG 2 cut(s) 606, 1304
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.