Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006830

Physical Location & Seq

Genomic Coordinates Forward (+)

3443199 .. 3445218

Gene Structure 2020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03840.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGCTATATCCTATTACAGTGGAAGTCCTGCATCAAGTGTTTGTTCCTCATGGTTTTGTTGAGAAGATCGTCACTTTTCAGAAGTCAGCTGGTTTTCAGGCCCTAATTCAGTATCAATCCCGCCAGAGTGCTGTTGCAGCTAGAACAGCCCTGCAGGGACGTAATATTTATGATGGTTGTTGTCAACTAGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGAGCGTTCAAGGGATTTCACAAATCCCAATTTGCCTTCAGAACAGAAAGGAAGATCTCCACAATCTGGATATGGTGATGCAGGAGGCATGTATGGCCTTCAAGGTACTGGAGCCAGGGCAGGTGCTTTATTTCTCCGGTTTTTTTTTTATTGCAGCAATCTTGTGATCTACAATAATTTATTAATATCTATGTTCATTTTCGTGTTTCAGTTGGATTTCCGCAGATGCCTAATGCGGCTGCAATTGCAGCAGCCTTCGGTGGAGGTTTGCCTCCTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

173

Amino Acids

19.54

Weight (kDa)

8.3

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43190 AT1G43190 AT1G43190
fragaria_vesca	FvH4_2g13280 FvH4_2g13280
malus_domestica	MD00G1066200.v1.1 MD00G1066300.v1.1 MD04G1044700.v1.1
prunus_persica	Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1 Prupe.8G036700_v2.0.a1
pyrus_communis	pycom04g03840
rosa_chinensis	RchiOBHm_Chr6g0274691
rosa_laevigata	RLG00000013528
rosa_multiflora	Rmu_sc0006223.1_g000020 Rmu_sc0013532.1_g000012
rosa_roxburghii	Rroxscaffold_7G00194060
rosa_rugosa	Rorug06G0083000
rosa_samantha	Rh6AG199200 Rh6BG202900 Rh6CG203100 Rh6DG194800
rosa_wichuraiana	Rw6G017310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	302
AciI	CCGC	3 cut(s)	121, 457, 472
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	2 cut(s)	246, 338
AjnI	CCWGG	2 cut(s)	350, 510
AluBI	AGCT	2 cut(s)	89, 140
AluI	AGCT	2 cut(s)	89, 140
AoxI	GGCC	2 cut(s)	99, 331
ApeKI	GCWGC	5 cut(s)	137, 390, 475, 484, 487
AseI	ATTAAT	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	323
BbvI	GCAGC	5 cut(s)	149, 402, 462, 496, 499
BccI	CCATC	1 cut(s)	167
BciT130I	CCWGG	2 cut(s)	352, 512
BfaI	CTAG	2 cut(s)	141, 188
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	347
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	6 cut(s)	138, 391, 473, 476, 485, 488
BlsI	GCNGC	6 cut(s)	139, 392, 474, 477, 486, 489
Bme1390I	CCNGG	2 cut(s)	352, 512
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	2 cut(s)	352, 512
BmsI	GCATC	3 cut(s)	40, 304, 452
BpmI	CTGGAG	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	349
BseBI	CCWGG	2 cut(s)	352, 512
BseDI	CCNNGG	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	5 cut(s)	149, 402, 462, 496, 499
BshFI	GGCC	2 cut(s)	101, 333
BsiSI	CCGG	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	171
BsnI	GGCC	2 cut(s)	101, 333
Bsp143I	GATC	3 cut(s)	66, 290, 402
BspACI	CCGC	3 cut(s)	121, 457, 472
BspANI	GGCC	2 cut(s)	101, 333
BspLI	GGNNCC	1 cut(s)	349
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	66, 290, 402
Bst2UI	CCWGG	2 cut(s)	352, 512
Bst4CI	ACNGT	1 cut(s)	19
BstKTI	GATC	3 cut(s)	69, 293, 405
BstMBI	GATC	3 cut(s)	66, 290, 402
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 146, 330, 481, 484
BstNI	CCWGG	2 cut(s)	352, 512
BstNSI	RCATGY	1 cut(s)	328
BstSCI	CCNGG	2 cut(s)	350, 510
BstSFI	CTRYAG	1 cut(s)	152
BstV1I	GCAGC	5 cut(s)	149, 402, 462, 496, 499
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	101, 333
BtsIMutI	CAGTG	1 cut(s)	24
BveI	ACCTGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	50, 325
CviJI	RGCY	8 cut(s)	89, 101, 140, 149, 333, 350, 475, 490
CviKI_1	RGCY	8 cut(s)	89, 101, 140, 149, 333, 350, 475, 490
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	3 cut(s)	68, 292, 404
DpnII	GATC	3 cut(s)	66, 290, 402
Eco57I	CTGAAG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	350, 510
FaeI	CATG	2 cut(s)	53, 328
FaiI	YATR	8 cut(s)	7, 51, 171, 309, 326, 330, 428, 517
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	2 cut(s)	49, 324
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	6 cut(s)	138, 391, 473, 476, 485, 488
Fsp4HI	GCNGC	6 cut(s)	138, 391, 473, 476, 485, 488
FspBI	CTAG	2 cut(s)	141, 188
GluI	GCNGC	6 cut(s)	138, 391, 473, 476, 485, 488
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	101, 333
HapII	CCGG	1 cut(s)	373
Hin1II	CATG	2 cut(s)	53, 328
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	185, 226
Hpy188I	TCNGA	2 cut(s)	81, 277
Hpy188III	TCNNGA	1 cut(s)	303
Hpy8I	GTNNAC	2 cut(s)	185, 226
HpyAV	CCTTC	3 cut(s)	282, 344, 501
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	7 cut(s)	31, 137, 154, 317, 390, 478, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 146, 330, 481, 484
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	53, 328
Kzo9I	GATC	3 cut(s)	66, 290, 402
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	5 cut(s)	149, 402, 462, 496, 499
LweI	GCATC	3 cut(s)	40, 304, 452
MaeI	CTAG	2 cut(s)	141, 188
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	68, 292, 404
MboI	GATC	3 cut(s)	66, 290, 402
MboII	GAAGA	2 cut(s)	76, 300
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	5 cut(s)	105, 215, 265, 412, 479
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	4 cut(s)	57, 314, 493, 518
MseI	TTAA	1 cut(s)	419
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	89
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	2 cut(s)	352, 512
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	2 cut(s)	352, 512
MwoI	GCNNNNNNNGC	5 cut(s)	137, 146, 330, 481, 484
NdeII	GATC	3 cut(s)	66, 290, 402
NlaIII	CATG	2 cut(s)	53, 328
NlaIV	GGNNCC	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	6 cut(s)	139, 392, 474, 477, 486, 489
PshBI	ATTAAT	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	350, 510
PspGI	CCWGG	2 cut(s)	350, 510
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	156
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	419
SatI	GCNGC	6 cut(s)	138, 391, 473, 476, 485, 488
Sau3AI	GATC	3 cut(s)	66, 290, 402
Sau96I	GGNCC	1 cut(s)	100
SbfI	CCTGCAGG	1 cut(s)	156
ScrFI	CCNGG	2 cut(s)	352, 512
SdaI	CCTGCAGG	1 cut(s)	156
SetI	ASST	7 cut(s)	91, 142, 163, 210, 343, 361, 504
SfaNI	GCATC	3 cut(s)	40, 304, 452
SfcI	CTRYAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse8387I	CCTGCAGG	1 cut(s)	156
Sse9I	AATT	5 cut(s)	105, 215, 265, 412, 479
SsiI	CCGC	3 cut(s)	121, 457, 472
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	2 cut(s)	141, 188
StyD4I	CCNGG	2 cut(s)	350, 510
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	163
TasI	AATT	5 cut(s)	105, 215, 265, 412, 479
TauI	GCSGC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	5 cut(s)	137, 390, 475, 484, 487
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	228, 421
TspRI	CASTG	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	419
XceI	RCATGY	1 cut(s)	328
XspI	CTAG	2 cut(s)	141, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.